Non-Coding RNA Search

Ss1.1-Liv1-LVRM10102F07.5

Sequence:


               
               TGCTCAATATATCTGCTGTATGTACTTGAGCAGAGGAGAATCTGCAAGAATTCACATCTC
CTGGCCTGCAGAGAAAGCAGAAACATGAGCACAGCAGGAAAAGTAATAAAATGCAAAGCA
GCTGTGCTATGGGAGCTCGAGAAACCATTTTCCATTGAGGAGGTGGAGGTCGCACCCCCG
AAGGCCTATGAAGTTCGTATTAAGATGGTGGCCACAGGAATCTGTCGCTCAGATGACCAT
GTGGTTCATGGATCCTTGGTCACACCTCTTCCTACGATCCTAGGTCACGAGGCAGCTGGC
ATTGTGGAGAGCATTGGTGAGGGGGTGACTACAGTAAAACCAGGTGATAAAGTCATCCCA
CTCTTTGTTCCCCAGTGTGGAAAGTGCAGTGTTTGTAAACACCCTGAAGCCAACTTTTGC
TGCAAAAATGATCTGACTAAGCCTCGGGGGACCCTTAGTGATGGTACCAGCAGGTTCACC
TGCAAAGGGAAGCCCATCTTGCAGTTTCTCGGCACCAGCACCTTCACCCAGTACACAGTG
GTGGATGAGATGTCAGTGGCCAAGATCGATGCAGCCTCACCACTGGAGAAAGTCTGTCTG
ATTGGCTGTGGATTTTCTACTGGTTATGGGTCTGCAATCAAAGTTGCCAAGGTCACCCAG
GGCTCCACCTGTGCCGTGTTCGGCCTCGGAGGAGTCGGCCTGTCTGTTGTCATGGGCTGT
AAAGCAGCTGGAGCAGCCAGGATCATTGGAGTGGACATCAACAAAGACAAATTTGCAAAA
GCCAAAGAGGTGGGTGCCACCGAGTGCATCAACCCTCAGGACTATGAGAAACCTATCCAG
GAGGTGCTACAGGAAATGAGCGGTGGAGGCGTGGATTTTTCATTTGAAGTCATTGGGAGG
ATTGACACTATGATTTCTGCCTTGCTGTGCTGTCAAAAAGCATACGGCGTAAGCGTCATT
GTAGGAGTACCTCCTAATTCTCAAAATATCTCTATAAACCCCATGTTGCTATTGAATGGA
CGCACCTGGAAAGGAGCTATTTTTGGTGGCTTTAAAAGTAAAGATTCTGTCCCCAAACTT
GTGGCTGATTTTATGGCTAAGAAGTTTTCACTGGATTCATTAATAACCCATGTTTTACCC
TTTGAAAAAATCAATGAAGGATTTGAACTGCTTCGCTCAGGAAAGAGTATCCGTACTATC
CTGACATTTTGAGACCATACACATGCCTGCACTTGTAGCAGGCTTCTGGCTTCTCCATCA
TCCAAAACATCAGCCAAACATCATCAATGATTCTGTTCTTTTTATTCTGTGCTACCAGTA
TATCACATATGGGAATTTTCCAAAGGAAAAAGAAATGGATGTGAAATCATTTGTCAAGCA
AATGTTTAAAATTCAAGTGGAAGCTAGAGGAACAATCATCTGGGTAACTGAGTCCAATAA
ACTTTCCTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCAATATATCTGCTGTATGTACTTGAGCAGAGGAGAATCTGCAAGAATTCACATCTC
CTGGCCTGCAGAGAAAGCAGAAACATGAGCACAGCAGGAAAAGTAATAAAATGCAAAGCA
GCTGTGCTATGGGAGCTCGAGAAACCATTTTCCATTGAGGAGGTGGAGGTCGCACCCCCG
AAGGCCTATGAAGTTCGTATTAAGATGGTGGCCACAGGAATCTGTCGCTCAGATGACCAT
GTGGTTCATGGATCCTTGGTCACACCTCTTCCTACGATCCTAGGTCACGAGGCAGCTGGC
ATTGTGGAGAGCATTGGTGAGGGGGTGACTACAGTAAAACCAGGTGATAAAGTCATCCCA
CTCTTTGTTCCCCAGTGTGGAAAGTGCAGTGTTTGTAAACACCCTGAAGCCAACTTTTGC
TGCAAAAATGATCTGACTAAGCCTCGGGGGACCCTTAGTGATGGTACCAGCAGGTTCACC
TGCAAAGGGAAGCCCATCTTGCAGTTTCTCGGCACCAGCACCTTCACCCAGTACACAGTG
GTGGATGAGATGTCAGTGGCCAAGATCGATGCAGCCTCACCACTGGAGAAAGTCTGTCTG
ATTGGCTGTGGATTTTCTACTGGTTATGGGTCTGCAATCAAAGTTGCCAAGGTCACCCAG
GGCTCCACCTGTGCCGTGTTCGGCCTCGGAGGAGTCGGCCTGTCTGTTGTCATGGGCTGT
AAAGCAGCTGGAGCAGCCAGGATCATTGGAGTGGACATCAACAAAGACAAATTTGCAAAA
GCCAAAGAGGTGGGTGCCACCGAGTGCATCAACCCTCAGGACTATGAGAAACCTATCCAG
GAGGTGCTACAGGAAATGAGCGGTGGAGGCGTGGATTTTTCATTTGAAGTCATTGGGAGG
ATTGACACTATGATTTCTGCCTTGCTGTGCTGTCAAAAAGCATACGGCGTAAGCGTCATT
GTAGGAGTACCTCCTAATTCTCAAAATATCTCTATAAACCCCATGTTGCTATTGAATGGA
CGCACCTGGAAAGGAGCTATTTTTGGTGGCTTTAAAAGTAAAGATTCTGTCCCCAAACTT
GTGGCTGATTTTATGGCTAAGAAGTTTTCACTGGATTCATTAATAACCCATGTTTTACCC
TTTGAAAAAATCAATGAAGGATTTGAACTGCTTCGCTCAGGAAAGAGTATCCGTACTATC
CTGACATTTTGAGACCATACACATGCCTGCACTTGTAGCAGGCTTCTGGCTTCTCCATCA
TCCAAAACATCAGCCAAACATCATCAATGATTCTGTTCTTTTTATTCTGTGCTACCAGTA
TATCACATATGGGAATTTTCCAAAGGAAAAAGAAATGGATGTGAAATCATTTGTCAAGCA
AATGTTTAAAATTCAAGTGGAAGCTAGAGGAACAATCATCTGGGTAACTGAGTCCAATAA
ACTTTCCTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|625197|pir||DEHOAL

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|625197|pir||DEHOAL

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               203-345, gnl|bosTau2|chr21 (37003741-37003599)
               

               
               203-345, gnl|Hg17|chr4 (100625481-100625339)
               

               
               203-345, gnl|Mm7|chr3 (138088917-138089059)
               


               
               650-936, gnl|bosTau2|chr21 (36998029-36997744)
               

               
               650-936, gnl|Hg17|chr4 (100621392-100621107)
               

               
               650-936, gnl|Mm7|chr3 (138095235-138095520)
               


               
               1186-1449, gnl|bosTau2|chr21 (36988853-36988593)
               

               
               1186-1449, gnl|Hg17|chr4 (100615113-100614837)
               

               
               1186-1449, gnl|Mm7|chr3 (138099078-138099301)
               


               
               1202-1399, gnl|bosTau2|chr18 (18314027-18313833)
               

               
               1202-1399, gnl|Hg17|chr4 (100615097-100614897)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-345, gnl|bosTau2|chr21 (37003741-37003599)
               

               
               203-345, gnl|Hg17|chr4 (100625481-100625339)
               

               
               203-345, gnl|Mm7|chr3 (138088917-138089059)
               


               
               650-936, gnl|bosTau2|chr21 (36998029-36997744)
               

               
               650-936, gnl|Hg17|chr4 (100621392-100621107)
               

               
               650-936, gnl|Mm7|chr3 (138095235-138095520)
               


               
               1186-1449, gnl|bosTau2|chr21 (36988853-36988593)
               

               
               1186-1449, gnl|Hg17|chr4 (100615113-100614837)
               

               
               1186-1449, gnl|Mm7|chr3 (138099078-138099301)
               


               
               1202-1399, gnl|bosTau2|chr18 (18314027-18313833)
               

               
               1202-1399, gnl|Hg17|chr4 (100615097-100614897)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               lun (6.17005)
               

               
               cli (0.91687)
               

               
               fli (0.405762)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (6.17005)
               

               
               cli (0.91687)
               

               
               fli (0.405762)
               

               
               eje (0.197668)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               ret (0.128733)

	203-345, gnl\|bosTau2\|chr21 (37003741-37003599)
	203-345, gnl\|Hg17\|chr4 (100625481-100625339)
	203-345, gnl\|Mm7\|chr3 (138088917-138089059)

	650-936, gnl\|bosTau2\|chr21 (36998029-36997744)
	650-936, gnl\|Hg17\|chr4 (100621392-100621107)
	650-936, gnl\|Mm7\|chr3 (138095235-138095520)

	1186-1449, gnl\|bosTau2\|chr21 (36988853-36988593)
	1186-1449, gnl\|Hg17\|chr4 (100615113-100614837)
	1186-1449, gnl\|Mm7\|chr3 (138099078-138099301)

	1202-1399, gnl\|bosTau2\|chr18 (18314027-18313833)
	1202-1399, gnl\|Hg17\|chr4 (100615097-100614897)

	lun (6.17005)
	cli (0.91687)
	fli (0.405762)
	eje (0.197668)
	ton (0.1755)
	duo (0.172801)
	nje (0.16592)
	nmm (0.132802)
	ret (0.128733)