Ss1.1-Liv1-LVRM10103F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGGCGGGCCTAAGAGCTGCAGAGGCCGGGAGCCGGGGAGCCCAGGAGAGCAAAATGGGT GAGTTGCCCTTAGATATCAATATCCAGGAACCTCGCTGGGACCAAAGCACTTTCCTGGGT AGAGCCCGGCACTTCTTCACTGTGACCGACCCTCGAAATCTGCTGCTGTCTGGGGCACAG CTGGAAGCTTCCCGGAACATCGTGCAGAACTACAGGGCCGGCGTGGTGACTCCAGGGCTC ACCGAGGACCAGCTGTGGCGGGCCAAGTATGTGTACGACTCTGCCTTCCATCCGGACACA GGGGAGAAGGTGGTCCTGATTGGCCGCATGTCAGCCCAGGTGCCCATGAACATGACCATC ACCGGCTGCATGCTCACCTTCTACAGGAAGACCCCAACCGTGGTGTTCTGGCAGTGGGTG AATCAATCCTTCAATGCCATTGTTAACTACTCCAACCGCAGTGGAGACGCTCCCATCACC GTGGGGCAGCTGGGAACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCCACGGCCCTG GGACTCAAATCCCTCACCAAGCATCTACCCCCGCTGGTCGGCAGATTTGTGCCCTTTGCA GCTGTGGCAGCTGCCAACTGCATCAACATCCCCCTGTATGAGGCAGAGGGAGCTGCAAGT AGGCATCCCCGTGACCAATGAAGAAGGTCAGAGGCTTGGCCACTCAGTGGCTGCAGCCAA ACAAGGAATTTTCCAGGTGGTGATATCAAGAATCTGCATGGCGATTCCTGCCATGGCCAT TCCCCCCGTGATCATGGACAGTCTGGAGAAGAAAGACTTCCTGAAGCGCCGCCCCTGGCT AGGGGCACCCCTGCAGGTGGGGCTGGTGGGCTTCTGCCTGGTGTTTGCCACCCCCCTGTG CTGTGCCCTGTTCCCCCAGAGAAGCTCCATAATAAAAGCAATGGTGCCACTGTTACTCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGGCGGGCCTAAGAGCTGCAGAGGCCGGGAGCCGGGGAGCCCAGGAGAGCAAAATGGGT GAGTTGCCCTTAGATATCAATATCCAGGAACCTCGCTGGGACCAAAGCACTTTCCTGGGT AGAGCCCGGCACTTCTTCACTGTGACCGACCCTCGAAATCTGCTGCTGTCTGGGGCACAG CTGGAAGCTTCCCGGAACATCGTGCAGAACTACAGGGCCGGCGTGGTGACTCCAGGGCTC ACCGAGGACCAGCTGTGGCGGGCCAAGTATGTGTACGACTCTGCCTTCCATCCGGACACA GGGGAGAAGGTGGTCCTGATTGGCCGCATGTCAGCCCAGGTGCCCATGAACATGACCATC ACCGGCTGCATGCTCACCTTCTACAGGAAGACCCCAACCGTGGTGTTCTGGCAGTGGGTG AATCAATCCTTCAATGCCATTGTTAACTACTCCAACCGCAGTGGAGACGCTCCCATCACC GTGGGGCAGCTGGGAACAGCCTATGTGAGTGCCACCACTGGGGCTGTGGCCACGGCCCTG GGACTCAAATCCCTCACCAAGCATCTACCCCCGCTGGTCGGCAGATTTGTGCCCTTTGCA GCTGTGGCAGCTGCCAACTGCATCAACATCCCCCTGTATGAGGCAGAGGGAGCTGCAAGT AGGCATCCCCGTGACCAATGAAGAAGGTCAGAGGCTTGGCCACTCAGTGGCTGCAGCCAA ACAAGGAATTTTCCAGGTGGTGATATCAAGAATCTGCATGGCGATTCCTGCCATGGCCAT TCCCCCCGTGATCATGGACAGTCTGGAGAAGAAAGACTTCCTGAAGCGCCGCCCCTGGCT AGGGGCACCCCTGCAGGTGGGGCTGGTGGGCTTCTGCCTGGTGTTTGCCACCCCCCTGTG CTGTGCCCTGTTCCCCCAGAGAAGCTCCATAATAAAAGCAATGGTGCCACTGTTACTCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 657-776, + strand, RNAz p=0.743662 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 657-776, + strand, RNAz p=0.743662 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 210-390, gnl|bosTau2|chr26 (13433866-13434046) | |
| 210-390, gnl|canFam2|chr28 (16711233-16711421) | |
| 210-390, gnl|danRer3|chr13 (16952112-16951925) | |
| 210-390, gnl|dasNov1|scaffold_4370 (51062-50895) | |
| 210-390, gnl|echTel1|scaffold_277702 (51287-51475) | |
| 210-390, gnl|fr1|chrUn (165350118-165350314) | |
| 210-390, gnl|galGal2|chr6 (22396760-22396940) | |
| 210-390, gnl|hg17|chr10 (102785232-102785420) | |
| 210-390, gnl|Hg17|chr10 (102785238-102785418) | |
| 210-390, gnl|loxAfr1|scaffold_69211 (10762-10952) | |
| 210-390, gnl|mm7|chr19 (44943605-44943793) | |
| 210-390, gnl|Mm7|chr19 (44943611-44943791) | |
| 210-390, gnl|monDom2|scaffold_14 (62649236-62649053) | |
| 210-390, gnl|panTro1|chr8 (104529472-104529660) | |
| 210-390, gnl|rheMac2|chr9 (100646874-100647062) | |
| 210-390, gnl|rn3|chr1 (250376357-250376545) | |
| 210-390, gnl|tetNig1|chr17 (5560359-5560177) | |
| 210-390, gnl|xenTro1|scaffold_1494 (40818-40998) | |
| 230-387, gnl|bosTau2|chr10 (765110-764953) | |
| 230-387, gnl|Hg17|chr5 (174868655-174868812) | |
| 230-387, gnl|Mm7|chr13 (53130433-53130590) | |
| 647-776, gnl|bosTau2|chr26 (13435294-13435423) | |
| 647-776, gnl|canFam2|chr28 (16712816-16712966) | |
| 647-776, gnl|danRer3|chr13 (16946482-16946347) | |
| 647-776, gnl|dasNov1|scaffold_4370 (49545-49396) | |
| 647-776, gnl|echTel1|scaffold_277702 (53698-53847) | |
| 647-776, gnl|fr1|chrUn (165351132-165351279) | |
| 647-776, gnl|galGal2|chr6 (22151763-22151604) | |
| 647-776, gnl|hg17|chr10 (102786816-102786966) | |
| 647-776, gnl|Hg17|chr10 (102786821-102786950) | |
| 647-776, gnl|loxAfr1|scaffold_21334 (1800-1941) | |
| 647-776, gnl|mm7|chr19 (44945962-44946108) | |
| 647-776, gnl|Mm7|chr19 (44945967-44946096) | |
| 647-776, gnl|monDom2|scaffold_14 (62647175-62647026) | |
| 647-776, gnl|oryCun1|scaffold_211698 (203333-203474) | |
| 647-776, gnl|panTro1|chr8 (104531164-104531314) | |
| 647-776, gnl|rheMac2|chr6 (171948574-171948714) | |
| 647-776, gnl|rn3|chr1 (250378518-250378659) | |
| 647-776, gnl|tetNig1|chr17 (5559054-5558906) | |
| 647-776, gnl|xenTro1|scaffold_1494 (47225-47357) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 210-390, gnl|bosTau2|chr26 (13433866-13434046) | |
| 210-390, gnl|canFam2|chr28 (16711233-16711421) | |
| 210-390, gnl|danRer3|chr13 (16952112-16951925) | |
| 210-390, gnl|dasNov1|scaffold_4370 (51062-50895) | |
| 210-390, gnl|echTel1|scaffold_277702 (51287-51475) | |
| 210-390, gnl|fr1|chrUn (165350118-165350314) | |
| 210-390, gnl|galGal2|chr6 (22396760-22396940) | |
| 210-390, gnl|hg17|chr10 (102785232-102785420) | |
| 210-390, gnl|Hg17|chr10 (102785238-102785418) | |
| 210-390, gnl|loxAfr1|scaffold_69211 (10762-10952) | |
| 210-390, gnl|mm7|chr19 (44943605-44943793) | |
| 210-390, gnl|Mm7|chr19 (44943611-44943791) | |
| 210-390, gnl|monDom2|scaffold_14 (62649236-62649053) | |
| 210-390, gnl|panTro1|chr8 (104529472-104529660) | |
| 210-390, gnl|rheMac2|chr9 (100646874-100647062) | |
| 210-390, gnl|rn3|chr1 (250376357-250376545) | |
| 210-390, gnl|tetNig1|chr17 (5560359-5560177) | |
| 210-390, gnl|xenTro1|scaffold_1494 (40818-40998) | |
| 230-387, gnl|bosTau2|chr10 (765110-764953) | |
| 230-387, gnl|Hg17|chr5 (174868655-174868812) | |
| 230-387, gnl|Mm7|chr13 (53130433-53130590) | |
| 647-776, gnl|bosTau2|chr26 (13435294-13435423) | |
| 647-776, gnl|canFam2|chr28 (16712816-16712966) | |
| 647-776, gnl|danRer3|chr13 (16946482-16946347) | |
| 647-776, gnl|dasNov1|scaffold_4370 (49545-49396) | |
| 647-776, gnl|echTel1|scaffold_277702 (53698-53847) | |
| 647-776, gnl|fr1|chrUn (165351132-165351279) | |
| 647-776, gnl|galGal2|chr6 (22151763-22151604) | |
| 647-776, gnl|hg17|chr10 (102786816-102786966) | |
| 647-776, gnl|Hg17|chr10 (102786821-102786950) | |
| 647-776, gnl|loxAfr1|scaffold_21334 (1800-1941) | |
| 647-776, gnl|mm7|chr19 (44945962-44946108) | |
| 647-776, gnl|Mm7|chr19 (44945967-44946096) | |
| 647-776, gnl|monDom2|scaffold_14 (62647175-62647026) | |
| 647-776, gnl|oryCun1|scaffold_211698 (203333-203474) | |
| 647-776, gnl|panTro1|chr8 (104531164-104531314) | |
| 647-776, gnl|rheMac2|chr6 (171948574-171948714) | |
| 647-776, gnl|rn3|chr1 (250378518-250378659) | |
| 647-776, gnl|tetNig1|chr17 (5559054-5558906) | |
| 647-776, gnl|xenTro1|scaffold_1494 (47225-47357) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) | |
| jej (0.0989218) |