Non-Coding RNA Search

Ss1.1-Liv1-LVRM10104E08.5

Sequence:


               
               TGTGGACTCTGAGGCTGCAGGACTAACTCAGAGGGCATGATGGCTGCTCAGAAGGAGCTC
TATGACGCCATTGTGATCGGGGCAGGCATCCAGGGCTGCTTCACTGCGTACCACCTGGCC
AAACACAGCAGGAGGGTCCTCCTGCTGGAGCAGTTCTTCCTCCCACATTCCCGAGGAAGC
TCCCATGGGCAGAGCAGGATAATCCGAAGGGCATACCCTGAAGACTTCTACACTGAGATG
ATGGCGGAGTGCTACCGGATATGGGCCCAGCTGCAGCATGAGGCAGGAACCCAATTATAC
AGGCAGACTGGACTACTGCTGCTGGGAATGAAGGAGAATCCAGAATTAAAGACAATCCAG
GCTACTTTGTCTAGGCATGGGGTGGAACACCAGTATCTTCCATCTGAGGAACTGAAGCAA
CGCTTCCCCAATATTCAGTTGGCCAGGGGAGAAGTAGGCCTCTTGGACAAGTCTGGAGGA
GTTCTCTATGCTGACAAGGCACTCAGGGTCCTCCAGGATGCAATTCGACAGCTAGGAGGC
ATAGTGCATGATGGAGAGAAGGTGATGGAGATAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGACTCTGAGGCTGCAGGACTAACTCAGAGGGCATGATGGCTGCTCAGAAGGAGCTC
TATGACGCCATTGTGATCGGGGCAGGCATCCAGGGCTGCTTCACTGCGTACCACCTGGCC
AAACACAGCAGGAGGGTCCTCCTGCTGGAGCAGTTCTTCCTCCCACATTCCCGAGGAAGC
TCCCATGGGCAGAGCAGGATAATCCGAAGGGCATACCCTGAAGACTTCTACACTGAGATG
ATGGCGGAGTGCTACCGGATATGGGCCCAGCTGCAGCATGAGGCAGGAACCCAATTATAC
AGGCAGACTGGACTACTGCTGCTGGGAATGAAGGAGAATCCAGAATTAAAGACAATCCAG
GCTACTTTGTCTAGGCATGGGGTGGAACACCAGTATCTTCCATCTGAGGAACTGAAGCAA
CGCTTCCCCAATATTCAGTTGGCCAGGGGAGAAGTAGGCCTCTTGGACAAGTCTGGAGGA
GTTCTCTATGCTGACAAGGCACTCAGGGTCCTCCAGGATGCAATTCGACAGCTAGGAGGC
ATAGTGCATGATGGAGAGAAGGTGATGGAGATAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57091875|ref|XP_548297.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57091875|ref|XP_548297.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               36-153, + strand, RNAz p=0.621644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-153, + strand, RNAz p=0.621644

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016518, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016518, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-153, gnl|bosTau2|chr19 (13948189-13948341)
               

               
               1-153, gnl|Hg17|chr17 (24394342-24394483)
               

               
               1-153, gnl|Mm7|chr11 (77975364-77975242)
               


               
               299-517, gnl|bosTau2|chr19 (13957303-13957521)
               

               
               299-517, gnl|canFam2|chr9 (46534926-46535153)
               

               
               299-517, gnl|danRer3|chrNA (2405286-2405061)
               

               
               299-517, gnl|dasNov1|scaffold_65616 (4510-4283)
               

               
               299-517, gnl|echTel1|scaffold_308103 (9969-9750)
               

               
               299-517, gnl|fr1|chrUn (181015938-181015711)
               

               
               299-517, gnl|hg17|chr17 (24404054-24404281)
               

               
               299-517, gnl|Hg17|chr17 (24404060-24404278)
               

               
               299-517, gnl|mm7|chr11 (77965589-77965352)
               

               
               299-517, gnl|Mm7|chr11 (77965571-77965353)
               

               
               299-517, gnl|monDom2|scaffold_44 (15054640-15054866)
               

               
               299-517, gnl|oryCun1|scaffold_206953 (78176-78402)
               

               
               299-517, gnl|panTro1|chr19 (27749495-27749722)
               

               
               299-517, gnl|rheMac2|chr16 (24272203-24272430)
               

               
               299-517, gnl|rn3|chr10 (63937784-63937555)
               

               
               299-517, gnl|xenTro1|scaffold_370 (560548-560328)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-153, gnl|bosTau2|chr19 (13948189-13948341)
               

               
               1-153, gnl|Hg17|chr17 (24394342-24394483)
               

               
               1-153, gnl|Mm7|chr11 (77975364-77975242)
               


               
               299-517, gnl|bosTau2|chr19 (13957303-13957521)
               

               
               299-517, gnl|canFam2|chr9 (46534926-46535153)
               

               
               299-517, gnl|danRer3|chrNA (2405286-2405061)
               

               
               299-517, gnl|dasNov1|scaffold_65616 (4510-4283)
               

               
               299-517, gnl|echTel1|scaffold_308103 (9969-9750)
               

               
               299-517, gnl|fr1|chrUn (181015938-181015711)
               

               
               299-517, gnl|hg17|chr17 (24404054-24404281)
               

               
               299-517, gnl|Hg17|chr17 (24404060-24404278)
               

               
               299-517, gnl|mm7|chr11 (77965589-77965352)
               

               
               299-517, gnl|Mm7|chr11 (77965571-77965353)
               

               
               299-517, gnl|monDom2|scaffold_44 (15054640-15054866)
               

               
               299-517, gnl|oryCun1|scaffold_206953 (78176-78402)
               

               
               299-517, gnl|panTro1|chr19 (27749495-27749722)
               

               
               299-517, gnl|rheMac2|chr16 (24272203-24272430)
               

               
               299-517, gnl|rn3|chr10 (63937784-63937555)
               

               
               299-517, gnl|xenTro1|scaffold_370 (560548-560328)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-153, gnl\|bosTau2\|chr19 (13948189-13948341)
	1-153, gnl\|Hg17\|chr17 (24394342-24394483)
	1-153, gnl\|Mm7\|chr11 (77975364-77975242)

	299-517, gnl\|bosTau2\|chr19 (13957303-13957521)
	299-517, gnl\|canFam2\|chr9 (46534926-46535153)
	299-517, gnl\|danRer3\|chrNA (2405286-2405061)
	299-517, gnl\|dasNov1\|scaffold_65616 (4510-4283)
	299-517, gnl\|echTel1\|scaffold_308103 (9969-9750)
	299-517, gnl\|fr1\|chrUn (181015938-181015711)
	299-517, gnl\|hg17\|chr17 (24404054-24404281)
	299-517, gnl\|Hg17\|chr17 (24404060-24404278)
	299-517, gnl\|mm7\|chr11 (77965589-77965352)
	299-517, gnl\|Mm7\|chr11 (77965571-77965353)
	299-517, gnl\|monDom2\|scaffold_44 (15054640-15054866)
	299-517, gnl\|oryCun1\|scaffold_206953 (78176-78402)
	299-517, gnl\|panTro1\|chr19 (27749495-27749722)
	299-517, gnl\|rheMac2\|chr16 (24272203-24272430)
	299-517, gnl\|rn3\|chr10 (63937784-63937555)
	299-517, gnl\|xenTro1\|scaffold_370 (560548-560328)