Ss1.1-Liv1-LVRM10105A03.5
|
CTGGGGCTCCCGGCATCCCGGTCGGTCGGTGGACGCCGACTCTGCACCGCTTCCCATTCG
CGGCCTTCCCTGTGCTCCGGTCGTTCGCCCCGCAGTTCACCCAGCTCCCGGGGCCGCTGC
TCAGGTTTGTACGCCTCCGCTGGCGACAGACCCATGGCTGAGCGCGGGGAACTCGACCTC
ACGGGCGCCAAACAGAACACTGGAGTGTGGCTGGTCAAGGTTCCTAAATATTTGTCACAG
CAGTGGGCTAAAGCCCCTGGAAGAGGTGAAGTTGGGAAACTACGGATTGCCAAGAATCAA
GGAAGGACTGAGGTGTCATTTACTTTGAATGAGGAACTTGCAAATATTCATGATATTGGC
GGAAAACCAGCTTCAGTCAGTGCTCCTAGAGAACATCCATTTGTCTTGCAAAGTGTTGGA
GGACAGACATTAACAGTGTTTACTGAGAGCTCATCAGATAAGCTGTCCCTGGAAGGAATA
GTGGTACAAAGAGCAGAATGCCGACCTGCCGCCAGTGAAAACTACATGAGACTAAAGAGA
TTACAAATAGAAGAATCTTCTAAACCTGTAAGGCTCTCACAACAACTGGACAAAGTCGTG
ACAACCAATTACAAACCTGTTGCTAATCATCAATACAATATTGAATATGAAAGGAAAAAG
AAAGAAGATGGAAAACGAGCCCGAGCTGATAAGCAATATGTTTTGGATATGCTGTTTTCG
GCTTTTGAGAAACACCAGTATTACAACCTGAAGGACCTGGTGGACATCACGAAACAGCCT
GTGTCGTACCTGAAGGAAATCTTAAAAGAAATCGGTATTCAGAATGTAAAAGGGATCCAC
AAAAACACTTGGGAGCTGAAGCCAGAGTACAGACATTATCAAGCAGAAGAAAAGAGTGAT
TAAGAAGACTCAGGCCCGCCTGTTAACAGAACAACTCAAGGGTGACGCGCTAATAATAAT
AAGCAAGCGGCCTTGATACCTGAAGACTTGAGCACCGTCTGTGTAGGGGGAAAATGACTG
GTACTTTAATTTCTCTAGGTAAAGTTTTTAAACAAGAATTCTTGTAAAGTTGCTTAACTG
ATTTTTGAGGCAAAAGAACACATTTATTTATAGACTTAACTTGTATTAAACCAGATTATT
CATGATGGGGTTCGAGGTTGGGGGTTGAAGAAGGTTTTTCTTTTTAAATGTTAACTTTTA
AAATGTAAAATTAGGAGATGCCTCCCCGTCCCTGTTTCTCTCTGTGCCAAGAGAATGGCA
TAGCAGGAGAAAAGCAGTCAGCCACAGACTCTCAAAAGGAATTAAAAAGCCAAAGTTCCT
TATTCTGAAATGGTCCAAGTATGAAGCTGTCTTTATTTTTTGTAACAGTTGGTTGTGTTT
CATCTTCACACACGTTAATGAAAGGATAGCATTTGTGTTTGTACTAAGACAGCAGTTTTC
GTCACTAGCTTAGTTTACCCCAGTGACATGAGAAATGGAAAAAGTCATGGTCACTCGGTC
TTACTTTCTTCCTTCTTTTTTTTGTTGGGGAGGCTCTTAAAATAATTAGAAATTAAATAC
TGTTTCTAGTGTATAGTCTATCCAGATTATAAGCTTCTCAAAGACTGGCTTTAGGAATCC
CTCGTGACTCAGCAGGTTAAGGGCCTGGGGAACTTTGGCATGCTGCGGGCGCAGCCAAAA
AAAAGACTGTCTTTGACCCCAGATTTTACTGCACATTCAGGAGACATGTATTGACTGACA
AATGCTGTTTATAAACTAGAGGAAGATTGGACAGCTAAGGCTGATATGTACAGACAGGTT
GTCATTTCCTGGGGAATAAAAATGTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTGGGGCTCCCGGCATCCCGGTCGGTCGGTGGACGCCGACTCTGCACCGCTTCCCATTCG
CGGCCTTCCCTGTGCTCCGGTCGTTCGCCCCGCAGTTCACCCAGCTCCCGGGGCCGCTGC
TCAGGTTTGTACGCCTCCGCTGGCGACAGACCCATGGCTGAGCGCGGGGAACTCGACCTC
ACGGGCGCCAAACAGAACACTGGAGTGTGGCTGGTCAAGGTTCCTAAATATTTGTCACAG
CAGTGGGCTAAAGCCCCTGGAAGAGGTGAAGTTGGGAAACTACGGATTGCCAAGAATCAA
GGAAGGACTGAGGTGTCATTTACTTTGAATGAGGAACTTGCAAATATTCATGATATTGGC
GGAAAACCAGCTTCAGTCAGTGCTCCTAGAGAACATCCATTTGTCTTGCAAAGTGTTGGA
GGACAGACATTAACAGTGTTTACTGAGAGCTCATCAGATAAGCTGTCCCTGGAAGGAATA
GTGGTACAAAGAGCAGAATGCCGACCTGCCGCCAGTGAAAACTACATGAGACTAAAGAGA
TTACAAATAGAAGAATCTTCTAAACCTGTAAGGCTCTCACAACAACTGGACAAAGTCGTG
ACAACCAATTACAAACCTGTTGCTAATCATCAATACAATATTGAATATGAAAGGAAAAAG
AAAGAAGATGGAAAACGAGCCCGAGCTGATAAGCAATATGTTTTGGATATGCTGTTTTCG
GCTTTTGAGAAACACCAGTATTACAACCTGAAGGACCTGGTGGACATCACGAAACAGCCT
GTGTCGTACCTGAAGGAAATCTTAAAAGAAATCGGTATTCAGAATGTAAAAGGGATCCAC
AAAAACACTTGGGAGCTGAAGCCAGAGTACAGACATTATCAAGCAGAAGAAAAGAGTGAT
TAAGAAGACTCAGGCCCGCCTGTTAACAGAACAACTCAAGGGTGACGCGCTAATAATAAT
AAGCAAGCGGCCTTGATACCTGAAGACTTGAGCACCGTCTGTGTAGGGGGAAAATGACTG
GTACTTTAATTTCTCTAGGTAAAGTTTTTAAACAAGAATTCTTGTAAAGTTGCTTAACTG
ATTTTTGAGGCAAAAGAACACATTTATTTATAGACTTAACTTGTATTAAACCAGATTATT
CATGATGGGGTTCGAGGTTGGGGGTTGAAGAAGGTTTTTCTTTTTAAATGTTAACTTTTA
AAATGTAAAATTAGGAGATGCCTCCCCGTCCCTGTTTCTCTCTGTGCCAAGAGAATGGCA
TAGCAGGAGAAAAGCAGTCAGCCACAGACTCTCAAAAGGAATTAAAAAGCCAAAGTTCCT
TATTCTGAAATGGTCCAAGTATGAAGCTGTCTTTATTTTTTGTAACAGTTGGTTGTGTTT
CATCTTCACACACGTTAATGAAAGGATAGCATTTGTGTTTGTACTAAGACAGCAGTTTTC
GTCACTAGCTTAGTTTACCCCAGTGACATGAGAAATGGAAAAAGTCATGGTCACTCGGTC
TTACTTTCTTCCTTCTTTTTTTTGTTGGGGAGGCTCTTAAAATAATTAGAAATTAAATAC
TGTTTCTAGTGTATAGTCTATCCAGATTATAAGCTTCTCAAAGACTGGCTTTAGGAATCC
CTCGTGACTCAGCAGGTTAAGGGCCTGGGGAACTTTGGCATGCTGCGGGCGCAGCCAAAA
AAAAGACTGTCTTTGACCCCAGATTTTACTGCACATTCAGGAGACATGTATTGACTGACA
AATGCTGTTTATAAACTAGAGGAAGATTGGACAGCTAAGGCTGATATGTACAGACAGGTT
GTCATTTCCTGGGGAATAAAAATGTTTCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
|
gi|31542922|ref|NP_112304.2| |
Protein identifier
|
gi|31542922|ref|NP_112304.2| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
4-221, gnl|bosTau2|chr12 (5891757-5891541) |
|
4-221, gnl|canFam2|chr22 (8847626-8847408) |
|
4-221, gnl|echTel1|scaffold_311088 (39732-39942) |
|
4-221, gnl|hg17|chr13 (44592632-44592868) |
|
4-221, gnl|Hg17|chr13 (44592647-44592858) |
|
4-221, gnl|loxAfr1|scaffold_13267 (5621-5376) |
|
4-221, gnl|mm7|chr14 (70691257-70691025) |
|
4-221, gnl|Mm7|chr14 (70691240-70691028) |
|
4-221, gnl|oryCun1|scaffold_156820 (3850-4096) |
|
4-221, gnl|panTro1|chr14 (44314582-44314818) |
|
4-221, gnl|rheMac2|chr17 (24035436-24035673) |
|
4-221, gnl|rn3|chr15 (56940875-56940648) |
| |
|
311-462, gnl|bosTau2|chr12 (5867553-5867402) |
|
311-462, gnl|Hg17|chr13 (44623820-44623971) |
|
311-462, gnl|Mm7|chr14 (70675917-70675766) |
| |
|
538-639, gnl|bosTau2|chr12 (5780556-5780455) |
|
538-639, gnl|Hg17|chr13 (44725004-44725105) |
|
538-639, gnl|Mm7|chr14 (70598085-70597984) |
| |
|
783-1216, gnl|bosTau2|chr12 (5757067-5756662) |
|
783-1216, gnl|Hg17|chr13 (44755576-44755998) |
| |
|
1249-1438, gnl|bosTau2|chr12 (5756601-5756410) |
|
1249-1438, gnl|Hg17|chr13 (44756063-44756231) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-221, gnl|bosTau2|chr12 (5891757-5891541) |
|
4-221, gnl|canFam2|chr22 (8847626-8847408) |
|
4-221, gnl|echTel1|scaffold_311088 (39732-39942) |
|
4-221, gnl|hg17|chr13 (44592632-44592868) |
|
4-221, gnl|Hg17|chr13 (44592647-44592858) |
|
4-221, gnl|loxAfr1|scaffold_13267 (5621-5376) |
|
4-221, gnl|mm7|chr14 (70691257-70691025) |
|
4-221, gnl|Mm7|chr14 (70691240-70691028) |
|
4-221, gnl|oryCun1|scaffold_156820 (3850-4096) |
|
4-221, gnl|panTro1|chr14 (44314582-44314818) |
|
4-221, gnl|rheMac2|chr17 (24035436-24035673) |
|
4-221, gnl|rn3|chr15 (56940875-56940648) |
| |
|
311-462, gnl|bosTau2|chr12 (5867553-5867402) |
|
311-462, gnl|Hg17|chr13 (44623820-44623971) |
|
311-462, gnl|Mm7|chr14 (70675917-70675766) |
| |
|
538-639, gnl|bosTau2|chr12 (5780556-5780455) |
|
538-639, gnl|Hg17|chr13 (44725004-44725105) |
|
538-639, gnl|Mm7|chr14 (70598085-70597984) |
| |
|
783-1216, gnl|bosTau2|chr12 (5757067-5756662) |
|
783-1216, gnl|Hg17|chr13 (44755576-44755998) |
| |
|
1249-1438, gnl|bosTau2|chr12 (5756601-5756410) |
|
1249-1438, gnl|Hg17|chr13 (44756063-44756231) |
|
sme (0.610874) |
|
cbe (0.478469) |
|
spl (0.429553) |
|
elu (0.385356) |
|
isp (0.300752) |
|
fat (0.294855) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
ret (0.257467) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
|
sme (0.610874) |
|
cbe (0.478469) |
|
spl (0.429553) |
|
elu (0.385356) |
|
isp (0.300752) |
|
fat (0.294855) |
|
pty (0.285429) |
|
lnt (0.284616) |
|
ret (0.257467) |
|
eru (0.240096) |
|
mgp (0.230681) |
|
nms (0.213858) |
|
cty (0.20816) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
gul (0.177588) |
|
fty (0.17584) |
|
sin (0.174948) |
|
fhi (0.169578) |
|
nje (0.16592) |
|
tbr (0.154178) |
|
lun (0.150489) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
ova (0.129132) |
|
sug (0.127291) |
|
thg (0.126791) |
|
ese (0.126502) |
|
bla (0.124347) |
|
tra (0.123092) |
|
clu (0.119646) |
|
pgl (0.118483) |
|
nbm (0.0993246) |
|
jej (0.0989218) |
