Non-Coding RNA Search

Ss1.1-Liv1-LVRM10106D11.5

Sequence:


               
               AGAGCCAGCTCTGGCTGTGCCGAGATGGAGCTGCCCCTGCCAGGGCTGTGGCTGAAGAGG
CTCTGGGTGCTCTTTCAGGTGGCCCTGCACGTGGCCATGGGCAAAGTGCTCATGACATTG
TTTCCTGGGAGAGTCAAGCAGGACATCCTGGCCATGAGCCAGAAGACGGGCATGGCCAAG
AACCCTCACTTCTCCCACGAGAACTGGATCCCCACCTTCTTCAGTGCCCAGTATTTCTGG
TTTGTGCTGAAGGTCCGATGGCAACGACTGGAGGACAAAACTGAGGAAGGGGGTCTGGCC
CCAAACTGCCCCGTGGTCAGCCTGTCAGGACAGAGGTGCCACATCTGGGACTTCATGCAA
GGCAACAGGCCACTAGTGCTAAATTTCGGAAGTTGCACCTGACCTTCATTTATTTTCAAA
TTTGACCAATTCAAGAGACTTATTGAAGATTTTAGTTCCATAGCAGATTTTCTCATCATT
TACATTGAAGAAGCACATGCATCAGATGGCTGGGCTTTTAAGAACAACGTGGACATCAAG
AATCACCAGAATCTCCAGGACCGCTTGCGGGCAGCCCACCTGCTGCTGGACAGGAGCCCC
CAGTGCCCCGTGGTGGTGGACACAATGAAGAACCAGAGCAGTCGGCTCTACGCGGCGCTG
CCCGAGAGGCTCTATGTGCTCCAGGCGGGCAGGATCCTGTACAAGGGTAAACCTGGCCCC
TGGAACTACCACCCAGAAGAAGTTCGTGCTGTTCTGGAAAAGCTCCACAGTTAATCTGGA
CAGATGCCCCAGTTCTAGGTGCCAAACAGGAGGGCTCCTAAGGCTTGGCTCGCCCGCCAT
CCATCCCGGCTGATGTTCACCTCTTGACCTGTGTCCCCAGCTGAATCACTGGTCAGGATC
TTTCTGATCCAAGCAAACAATTGTTACAATGCGAAAACGAAGCAAGCTGAGGGCTAGAGA
AGATACGACTCCACACCGCCCCCTCCAGGGAAACCTGTATATTGCACATCTCAGCGTGAG
AGTAGGTCCTCCCTGGGCTTACTTAGGAGGGGTGGTCTCTCTCCAGCCACTTTGCTATGG
CATTTCTTAAACAAAGTAATTTCATTTCACCAAGTTTGCCATTTATGGAATTGATCACTT
AAGACACTAAACTGGTTTTCAGCACTAAGCATGGGAGATCTCCGGGTGTTTAGAGAGTGA
TGAAGAATTTAAAGGGAAACGAGAAGGAATGGGAATAGACCTAAAGATGGGAATCCTTTC
CTTTAGCAAAAGATTTAAACCAGAGGGCGGTGGTGGTGATGAGGGGTGAGTTTCCATGGC
GACATATCTTCAATTCTAATGCAGAAGAGGAGGGTACTCTCTTTACCACCTTTGAATACA
TTTCAGAGAAGCCTGGCTCACTGTCCCTGGAAAACTAACACTGTCTTCACTTATCAAGAG
TCACCTGGGAGGAGCACTGGTTCCGGGAAACCCGTATACCCTTGACCGAACTAGACAACG
GTCACTACAAAGCTGTCATTCAGTTATACAGAAGCTTATATTTGAAATTCTGTTTCTCCA
CTTCCTTCCCAAGTCTCCTAATGGTCATTTATGTTAGATTACATCAGACTAATGGATAAC
CATTGGTATTGATCTGTTTTAACTCTGCTTCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCAGCTCTGGCTGTGCCGAGATGGAGCTGCCCCTGCCAGGGCTGTGGCTGAAGAGG
CTCTGGGTGCTCTTTCAGGTGGCCCTGCACGTGGCCATGGGCAAAGTGCTCATGACATTG
TTTCCTGGGAGAGTCAAGCAGGACATCCTGGCCATGAGCCAGAAGACGGGCATGGCCAAG
AACCCTCACTTCTCCCACGAGAACTGGATCCCCACCTTCTTCAGTGCCCAGTATTTCTGG
TTTGTGCTGAAGGTCCGATGGCAACGACTGGAGGACAAAACTGAGGAAGGGGGTCTGGCC
CCAAACTGCCCCGTGGTCAGCCTGTCAGGACAGAGGTGCCACATCTGGGACTTCATGCAA
GGCAACAGGCCACTAGTGCTAAATTTCGGAAGTTGCACCTGACCTTCATTTATTTTCAAA
TTTGACCAATTCAAGAGACTTATTGAAGATTTTAGTTCCATAGCAGATTTTCTCATCATT
TACATTGAAGAAGCACATGCATCAGATGGCTGGGCTTTTAAGAACAACGTGGACATCAAG
AATCACCAGAATCTCCAGGACCGCTTGCGGGCAGCCCACCTGCTGCTGGACAGGAGCCCC
CAGTGCCCCGTGGTGGTGGACACAATGAAGAACCAGAGCAGTCGGCTCTACGCGGCGCTG
CCCGAGAGGCTCTATGTGCTCCAGGCGGGCAGGATCCTGTACAAGGGTAAACCTGGCCCC
TGGAACTACCACCCAGAAGAAGTTCGTGCTGTTCTGGAAAAGCTCCACAGTTAATCTGGA
CAGATGCCCCAGTTCTAGGTGCCAAACAGGAGGGCTCCTAAGGCTTGGCTCGCCCGCCAT
CCATCCCGGCTGATGTTCACCTCTTGACCTGTGTCCCCAGCTGAATCACTGGTCAGGATC
TTTCTGATCCAAGCAAACAATTGTTACAATGCGAAAACGAAGCAAGCTGAGGGCTAGAGA
AGATACGACTCCACACCGCCCCCTCCAGGGAAACCTGTATATTGCACATCTCAGCGTGAG
AGTAGGTCCTCCCTGGGCTTACTTAGGAGGGGTGGTCTCTCTCCAGCCACTTTGCTATGG
CATTTCTTAAACAAAGTAATTTCATTTCACCAAGTTTGCCATTTATGGAATTGATCACTT
AAGACACTAAACTGGTTTTCAGCACTAAGCATGGGAGATCTCCGGGTGTTTAGAGAGTGA
TGAAGAATTTAAAGGGAAACGAGAAGGAATGGGAATAGACCTAAAGATGGGAATCCTTTC
CTTTAGCAAAAGATTTAAACCAGAGGGCGGTGGTGGTGATGAGGGGTGAGTTTCCATGGC
GACATATCTTCAATTCTAATGCAGAAGAGGAGGGTACTCTCTTTACCACCTTTGAATACA
TTTCAGAGAAGCCTGGCTCACTGTCCCTGGAAAACTAACACTGTCTTCACTTATCAAGAG
TCACCTGGGAGGAGCACTGGTTCCGGGAAACCCGTATACCCTTGACCGAACTAGACAACG
GTCACTACAAAGCTGTCATTCAGTTATACAGAAGCTTATATTTGAAATTCTGTTTCTCCA
CTTCCTTCCCAAGTCTCCTAATGGTCATTTATGTTAGATTACATCAGACTAATGGATAAC
CATTGGTATTGATCTGTTTTAACTCTGCTTCTTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6QN13_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6QN13_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-521, + strand, RNAz p=0.855213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, + strand, RNAz p=0.855213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX161470, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX161470, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               286-731, gnl|bosTau2|chr21 (46122619-46123070)
               

               
               286-731, gnl|Hg17|chr14 (101097977-101098428)
               

               
               286-731, gnl|Mm7|chr12 (107797882-107798333)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               286-731, gnl|bosTau2|chr21 (46122619-46123070)
               

               
               286-731, gnl|Hg17|chr14 (101097977-101098428)
               

               
               286-731, gnl|Mm7|chr12 (107797882-107798333)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lun (0.300978)
               

               
               kid (0.259471)
               

               
               nje (0.16592)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)
               

               
               kid (0.259471)
               

               
               nje (0.16592)

	286-731, gnl\|bosTau2\|chr21 (46122619-46123070)
	286-731, gnl\|Hg17\|chr14 (101097977-101098428)
	286-731, gnl\|Mm7\|chr12 (107797882-107798333)