Non-Coding RNA Search

Ss1.1-Liv1-LVRM10106H02.5

Sequence:


               
               ATAAGCCGCTCCTCCGGGTCCGAAATGGCAGTGTCCTGTTGTTGCATGGTCACAAGATGG
AAGTTAGCAGGTATCTGTGCAGTTACCTAATCTCTTTCCTCCTTTTCCTGTTCCACTCAG
AGACTGCCTGCCACCCCTTGGGAAAGAGACCTTGCAGGATGCAAGCCTTCAGAATCTGGG
ATGTCAACCAGAAGACTTTCTACCTGAGGAATAACCAATTAGTTGCTGGATACTTGCAAG
GACCAAATACTAAACTGGAAGAGAAGATAGATGTGGTGCCTGTTGAGCCTCATTTTGTGT
TCCTGGGGATCCATGGAGGGAAGCTGTGCCTGTCCTGTGTCAAGTCTGGTGATGAGATGA
AGCTCCAGTTGGAGCCAGTTAACATCACAGACCTGAGAAAGAACAGCGAGCAGGACAAGC
GCTTCACCTTCATCCGCTCCGACAGTGGCCCCACCACCAGCTTTGAGTCAGCCGCCTGTC
CTGGCTGGTTCCTCTGCACTGCACTAGAGGCAGACCAGCCTGTCGGCCTCACCAACACGC
CCAAAGCAGCCGTCAAGGTCACCAAGTTCTACTTCCAGCAGGACCAGTAATGCTGCCCAG
CCTCCCTGCCCCTGTTCCCCAGGTCCTTGACATCAGAGATGCCTCTCCACCCTGCCTGGG
GCCTTCTGGGGCTCAGCAGGGTGGCCTTGACCCAGAACTCTCAGGAGGGGATACAAGGCC
CTGGGAAGGACTCTGACTTCAGCCTCCTCCACTCACCCAGCCTCCATGCTGCCTCCACAG
AGGTCTATCTAAAGTACAAATGGAACCACAGCCCTGCTCAGAGCCCCCAGTGTCGCCTGT
GCCTTCATGGTAAAGCCCAGGCCCCGTGGCCAGCCTGGACCCCCTCTGCTATCCTCTCCC
AAGCCCTTCCTCCTCCCTCACTCCACCTTCCAGGCTCCAGATCCCTCAGGCTGACCTGCC
CCCAAGGAGCTACCATTCCTCCTTATGCAAACAGTGCTGCTTCATTGGCAAGATTTTTAG
GGTCTGTGGCAAAATGGAAAATAAGGATTTCCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGCCGCTCCTCCGGGTCCGAAATGGCAGTGTCCTGTTGTTGCATGGTCACAAGATGG
AAGTTAGCAGGTATCTGTGCAGTTACCTAATCTCTTTCCTCCTTTTCCTGTTCCACTCAG
AGACTGCCTGCCACCCCTTGGGAAAGAGACCTTGCAGGATGCAAGCCTTCAGAATCTGGG
ATGTCAACCAGAAGACTTTCTACCTGAGGAATAACCAATTAGTTGCTGGATACTTGCAAG
GACCAAATACTAAACTGGAAGAGAAGATAGATGTGGTGCCTGTTGAGCCTCATTTTGTGT
TCCTGGGGATCCATGGAGGGAAGCTGTGCCTGTCCTGTGTCAAGTCTGGTGATGAGATGA
AGCTCCAGTTGGAGCCAGTTAACATCACAGACCTGAGAAAGAACAGCGAGCAGGACAAGC
GCTTCACCTTCATCCGCTCCGACAGTGGCCCCACCACCAGCTTTGAGTCAGCCGCCTGTC
CTGGCTGGTTCCTCTGCACTGCACTAGAGGCAGACCAGCCTGTCGGCCTCACCAACACGC
CCAAAGCAGCCGTCAAGGTCACCAAGTTCTACTTCCAGCAGGACCAGTAATGCTGCCCAG
CCTCCCTGCCCCTGTTCCCCAGGTCCTTGACATCAGAGATGCCTCTCCACCCTGCCTGGG
GCCTTCTGGGGCTCAGCAGGGTGGCCTTGACCCAGAACTCTCAGGAGGGGATACAAGGCC
CTGGGAAGGACTCTGACTTCAGCCTCCTCCACTCACCCAGCCTCCATGCTGCCTCCACAG
AGGTCTATCTAAAGTACAAATGGAACCACAGCCCTGCTCAGAGCCCCCAGTGTCGCCTGT
GCCTTCATGGTAAAGCCCAGGCCCCGTGGCCAGCCTGGACCCCCTCTGCTATCCTCTCCC
AAGCCCTTCCTCCTCCCTCACTCCACCTTCCAGGCTCCAGATCCCTCAGGCTGACCTGCC
CCCAAGGAGCTACCATTCCTCCTTATGCAAACAGTGCTGCTTCATTGGCAAGATTTTTAG
GGTCTGTGGCAAAATGGAAAATAAGGATTTCCTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55742626|ref|NP_999427.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55742626|ref|NP_999427.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-172, gnl|bosTau2|chr11 (32546592-32546427)
               

               
               1-172, gnl|canFam2|chr17 (40355999-40356329)
               

               
               1-172, gnl|echTel1|scaffold_277708 (55962-56280)
               

               
               1-172, gnl|hg17|chr2 (113601314-113601650)
               

               
               1-172, gnl|Hg17|chr2 (113601377-113601548)
               

               
               1-172, gnl|loxAfr1|scaffold_10793 (32573-32248)
               

               
               1-172, gnl|mm7|chr2 (24352636-24352950)
               

               
               1-172, gnl|Mm7|chr2 (24352699-24352882)
               

               
               1-172, gnl|monDom2|scaffold_63 (5914978-5914616)
               

               
               1-172, gnl|oryCun1|scaffold_87107 (4076-3762)
               

               
               1-172, gnl|panTro1|chr12 (116670706-116671042)
               

               
               1-172, gnl|rheMac2|chr13 (112496961-112497297)
               

               
               1-172, gnl|rn3|chr3 (2607676-2607990)
               


               
               373-874, gnl|bosTau2|chr11 (32541038-32540513)
               

               
               373-874, gnl|Hg17|chr2 (113606462-113606976)
               

               
               373-874, gnl|Mm7|chr2 (24356724-24357213)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr11 (32546592-32546427)
               

               
               1-172, gnl|canFam2|chr17 (40355999-40356329)
               

               
               1-172, gnl|echTel1|scaffold_277708 (55962-56280)
               

               
               1-172, gnl|hg17|chr2 (113601314-113601650)
               

               
               1-172, gnl|Hg17|chr2 (113601377-113601548)
               

               
               1-172, gnl|loxAfr1|scaffold_10793 (32573-32248)
               

               
               1-172, gnl|mm7|chr2 (24352636-24352950)
               

               
               1-172, gnl|Mm7|chr2 (24352699-24352882)
               

               
               1-172, gnl|monDom2|scaffold_63 (5914978-5914616)
               

               
               1-172, gnl|oryCun1|scaffold_87107 (4076-3762)
               

               
               1-172, gnl|panTro1|chr12 (116670706-116671042)
               

               
               1-172, gnl|rheMac2|chr13 (112496961-112497297)
               

               
               1-172, gnl|rn3|chr3 (2607676-2607990)
               


               
               373-874, gnl|bosTau2|chr11 (32541038-32540513)
               

               
               373-874, gnl|Hg17|chr2 (113606462-113606976)
               

               
               373-874, gnl|Mm7|chr2 (24356724-24357213)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.279096)
               

               
               cag (0.151194)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cag (0.151194)
               

               
               cbl (0.114797)

	1-172, gnl\|bosTau2\|chr11 (32546592-32546427)
	1-172, gnl\|canFam2\|chr17 (40355999-40356329)
	1-172, gnl\|echTel1\|scaffold_277708 (55962-56280)
	1-172, gnl\|hg17\|chr2 (113601314-113601650)
	1-172, gnl\|Hg17\|chr2 (113601377-113601548)
	1-172, gnl\|loxAfr1\|scaffold_10793 (32573-32248)
	1-172, gnl\|mm7\|chr2 (24352636-24352950)
	1-172, gnl\|Mm7\|chr2 (24352699-24352882)
	1-172, gnl\|monDom2\|scaffold_63 (5914978-5914616)
	1-172, gnl\|oryCun1\|scaffold_87107 (4076-3762)
	1-172, gnl\|panTro1\|chr12 (116670706-116671042)
	1-172, gnl\|rheMac2\|chr13 (112496961-112497297)
	1-172, gnl\|rn3\|chr3 (2607676-2607990)

	373-874, gnl\|bosTau2\|chr11 (32541038-32540513)
	373-874, gnl\|Hg17\|chr2 (113606462-113606976)
	373-874, gnl\|Mm7\|chr2 (24356724-24357213)