Non-Coding RNA Search

Ss1.1-Liv1-LVRM10108B06.5

Sequence:


               
               ACTCTGGAGGAGGCTCCTGGATTGCTCTTGGTGTTGAATAGTCTGCTTTCCTGGTAATAG
GAAATCTTTTTTAAGGAACAGAATACTTGTCTACAGGTTTACAAAATATGAACCTTATGC
ATCAAGGGGATTTTTTTTTTTAACAGTTATTAATGAATTATTTTACGTTTCCTGGGTTTC
TTTTTAAACTACACCTTGATACCCCAAGTGTCTCTATTGTCTTCCATTAGTTAACAGGAG
TATTTGGCTTCCCTAAGAAGCATCCACACTGTATTAGAAGCTGGGTTTTCCGTTTGAAAA
TCCAAATTTCTGCCGTATACACTTGTAACCACCTGCCCATAAGGTTGATGAGGTGCACTT
GTAAATGCATGAATGTGGCGTAGCAGTAGGAGATTACAGCACTACAGTTGCATTTTAAGT
CTCAGATCTTACCTGGACTAGCTCAAACATGTTAAGCTATGATTGCCTTGGCCAATTTGA
TGGCTATTATACTTGCATTTGTATAGTATAATAGTATGTAAGTTTCAACAAATCACGAAA
TGTTTCCATCAGCCGAAAGTGACATATGTTTCAGGAACATTGTAAATTCGCTTTCCCAAG
AGAGAATTTAAACGCTCCGCTCCGTGTCAATATTATGTTGTCTAGAGCAACATTTCATCA
AGTATTCCTGTCGTCTTCCTTGGCTGTCTTTCAGAGGAGACGTCTCTAATGTAGTGAGTC
ATTCCCGCTCACACAGTGACGCTGGTCCAACACTGCAGACAGATCCCGTGTGGCAGGAAC
GATGTACAGAACGCAGGGGACGGCCTCCCCTCGCCCCCGCCACCCGGACCGGACTTGGTG
GGCACATGCTCGGAGAGAATGGATTAGTTTAGAAGGCGAGGATGCAGACCCCTGTTGTCC
TCCGAGCTCCTCTCTGAGGTAAAGAGCTTGGAGACAATGGGGCAGACCCAGATGTAATGC
GAGTAATCATTCTGTTTAAAAAACTTGGGGTGCCATCCGGTCTAAAGCCACTGGTTTGGG
AAGCAACATTTTTTTTTTTTTTTTGGTAAATCGTGTTTTGGGAGTACTGAACTTCATAGG
GGCTTGCCTTAATCTCTATTTAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTGGAGGAGGCTCCTGGATTGCTCTTGGTGTTGAATAGTCTGCTTTCCTGGTAATAG
GAAATCTTTTTTAAGGAACAGAATACTTGTCTACAGGTTTACAAAATATGAACCTTATGC
ATCAAGGGGATTTTTTTTTTTAACAGTTATTAATGAATTATTTTACGTTTCCTGGGTTTC
TTTTTAAACTACACCTTGATACCCCAAGTGTCTCTATTGTCTTCCATTAGTTAACAGGAG
TATTTGGCTTCCCTAAGAAGCATCCACACTGTATTAGAAGCTGGGTTTTCCGTTTGAAAA
TCCAAATTTCTGCCGTATACACTTGTAACCACCTGCCCATAAGGTTGATGAGGTGCACTT
GTAAATGCATGAATGTGGCGTAGCAGTAGGAGATTACAGCACTACAGTTGCATTTTAAGT
CTCAGATCTTACCTGGACTAGCTCAAACATGTTAAGCTATGATTGCCTTGGCCAATTTGA
TGGCTATTATACTTGCATTTGTATAGTATAATAGTATGTAAGTTTCAACAAATCACGAAA
TGTTTCCATCAGCCGAAAGTGACATATGTTTCAGGAACATTGTAAATTCGCTTTCCCAAG
AGAGAATTTAAACGCTCCGCTCCGTGTCAATATTATGTTGTCTAGAGCAACATTTCATCA
AGTATTCCTGTCGTCTTCCTTGGCTGTCTTTCAGAGGAGACGTCTCTAATGTAGTGAGTC
ATTCCCGCTCACACAGTGACGCTGGTCCAACACTGCAGACAGATCCCGTGTGGCAGGAAC
GATGTACAGAACGCAGGGGACGGCCTCCCCTCGCCCCCGCCACCCGGACCGGACTTGGTG
GGCACATGCTCGGAGAGAATGGATTAGTTTAGAAGGCGAGGATGCAGACCCCTGTTGTCC
TCCGAGCTCCTCTCTGAGGTAAAGAGCTTGGAGACAATGGGGCAGACCCAGATGTAATGC
GAGTAATCATTCTGTTTAAAAAACTTGGGGTGCCATCCGGTCTAAAGCCACTGGTTTGGG
AAGCAACATTTTTTTTTTTTTTTTGGTAAATCGTGTTTTGGGAGTACTGAACTTCATAGG
GGCTTGCCTTAATCTCTATTTAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-520, + strand, RNAz p=0.997931

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-520, + strand, RNAz p=0.997931

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-606, gnl|bosTau2|chr16 (14054524-14053928)
               

               
               1-606, gnl|Hg17|chr1 (220654080-220654709)
               


               
               820-1104, gnl|bosTau2|chr16 (14053689-14053403)
               

               
               820-1104, gnl|Hg17|chr1 (220654975-220655229)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-606, gnl|bosTau2|chr16 (14054524-14053928)
               

               
               1-606, gnl|Hg17|chr1 (220654080-220654709)
               


               
               820-1104, gnl|bosTau2|chr16 (14053689-14053403)
               

               
               820-1104, gnl|Hg17|chr1 (220654975-220655229)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               eep (0.122564)

	1-606, gnl\|bosTau2\|chr16 (14054524-14053928)
	1-606, gnl\|Hg17\|chr1 (220654080-220654709)

	820-1104, gnl\|bosTau2\|chr16 (14053689-14053403)
	820-1104, gnl\|Hg17\|chr1 (220654975-220655229)