Non-Coding RNA Search

Ss1.1-Liv1-LVRM10110F09.5

Sequence:


               
               AAAGAAGGAGACAAGATGGCGGCGTCCGTGAGGCTGGGTGCTTTGAGGTTGCTGCACGGT
GTCACGCCTTGGCGGAGCAGGCGTCCTCACTGTGAAGACATTGCCCTGAGCCATCTCCTA
CAGTCCTTAAGGAAGCTGCCTTTCAGAACCTTTTCTACAAATGCCAGAAAAGTCCATACA
GCCCCTGCCCGAACCTTGTCACTGCTGCGCCCTCTGCCTGTGCTGGTTGCGACGGGCGGC
GGGTATGCAGGTTACCGGCAGTATGAGAAGTACCGGGAGCGGGAGTTGGAGAAGTTGGGA
TTGGAGATTCCACCCAAACTTGCTGGCCACTGGGAGGTGGCCCTGTACAAGTCGGTGCCC
ACGCGCTTGCTGTCGCGGGCCTGGGGCCGCCTCAACCAAGTGGAGCTGCCGCACTGGCTG
CGCAGGCCCGTCTATAGCCTGTACATTTGGACCTTCGGGGTGAACATGAAGGAGGCCGCC
GTGGAGGACCTGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGCGCAAGCTCAAGCCG
CAGGCCCGGCCTGTCTGCGGCCTGCACAGTGTGATCAGCCCATCCGATGGAAAGATCCTC
AACTTTGGGCAGGTGAAGAACTGCGAGGTGGAGCAGGTGAAGGGGGTCACCTACTCGCTG
GAATCATTCCTGGGCCCACGAAACTCCACAGACGACCTGGCCTTCCCACCAGCCACCTCC
CATGGCTCCTTCAGGAGCCAGCTGGTCACACGAGAAGGGAACGAGCTCTACCACTGCGTC
ATCTACTTAGCACCTGGAGACTATCACTGCTTCCACTCCCCCACTGACTGGACTGTCTCC
CACCGGCGCCACTTCCCAGGCTCCCTGATGTCTGTGAACCCTGGTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAAGGAGACAAGATGGCGGCGTCCGTGAGGCTGGGTGCTTTGAGGTTGCTGCACGGT
GTCACGCCTTGGCGGAGCAGGCGTCCTCACTGTGAAGACATTGCCCTGAGCCATCTCCTA
CAGTCCTTAAGGAAGCTGCCTTTCAGAACCTTTTCTACAAATGCCAGAAAAGTCCATACA
GCCCCTGCCCGAACCTTGTCACTGCTGCGCCCTCTGCCTGTGCTGGTTGCGACGGGCGGC
GGGTATGCAGGTTACCGGCAGTATGAGAAGTACCGGGAGCGGGAGTTGGAGAAGTTGGGA
TTGGAGATTCCACCCAAACTTGCTGGCCACTGGGAGGTGGCCCTGTACAAGTCGGTGCCC
ACGCGCTTGCTGTCGCGGGCCTGGGGCCGCCTCAACCAAGTGGAGCTGCCGCACTGGCTG
CGCAGGCCCGTCTATAGCCTGTACATTTGGACCTTCGGGGTGAACATGAAGGAGGCCGCC
GTGGAGGACCTGCACCACTACCGCAACCTCAGCGAGTTCTTCCGGCGCAAGCTCAAGCCG
CAGGCCCGGCCTGTCTGCGGCCTGCACAGTGTGATCAGCCCATCCGATGGAAAGATCCTC
AACTTTGGGCAGGTGAAGAACTGCGAGGTGGAGCAGGTGAAGGGGGTCACCTACTCGCTG
GAATCATTCCTGGGCCCACGAAACTCCACAGACGACCTGGCCTTCCCACCAGCCACCTCC
CATGGCTCCTTCAGGAGCCAGCTGGTCACACGAGAAGGGAACGAGCTCTACCACTGCGTC
ATCTACTTAGCACCTGGAGACTATCACTGCTTCCACTCCCCCACTGACTGGACTGTCTCC
CACCGGCGCCACTTCCCAGGCTCCCTGATGTCTGTGAACCCTGGTATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55730400|emb|CAH91922.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55730400|emb|CAH91922.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               335-581, gnl|bosTau2|chr17 (43201541-43201295)
               

               
               335-581, gnl|Hg17|chr22 (30342427-30342181)
               

               
               335-581, gnl|Mm7|chr5 (31802120-31801874)
               


               
               710-860, gnl|bosTau2|chr17 (43200873-43200723)
               

               
               710-860, gnl|Hg17|chr22 (30341685-30341535)
               

               
               710-860, gnl|Mm7|chr5 (31801282-31801132)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               335-581, gnl|bosTau2|chr17 (43201541-43201295)
               

               
               335-581, gnl|Hg17|chr22 (30342427-30342181)
               

               
               335-581, gnl|Mm7|chr5 (31802120-31801874)
               


               
               710-860, gnl|bosTau2|chr17 (43200873-43200723)
               

               
               710-860, gnl|Hg17|chr22 (30341685-30341535)
               

               
               710-860, gnl|Mm7|chr5 (31801282-31801132)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eru (0.120048)

	335-581, gnl\|bosTau2\|chr17 (43201541-43201295)
	335-581, gnl\|Hg17\|chr22 (30342427-30342181)
	335-581, gnl\|Mm7\|chr5 (31802120-31801874)

	710-860, gnl\|bosTau2\|chr17 (43200873-43200723)
	710-860, gnl\|Hg17\|chr22 (30341685-30341535)
	710-860, gnl\|Mm7\|chr5 (31801282-31801132)