Non-Coding RNA Search

Ss1.1-Liv1-LVRM10118E01.5

Sequence:


               
               CCTCGTGCCGCCGCCACGCATCACGCGGGGGGCGGGAGTTGACAGACTGTCTCTGGCTGG
ATTTCGGCGGCCCCGGAACCGTGGAAGAGGTTCCCGAGGGCCGCTACGATGCCCTCCCCG
GAGCGGGTCAGTCAGCTCCTGGACCTGTGAGTTGGCCCCGGCCCGCCTCCCTTCGCCCCG
CCGCGGCACCACCCGCCGCCCCGCGCGGCTCTCCTTCCCCGCCCCCTTCCCGCCTCTGAC
CGCTGAGAAGGCCCCGCAGGTGTTTCCACTCCTGGATCCCAGACTTGTGCTCTCCTCACT
GAGGAAGGTCAGGCCAAAAGGGTTGCCTAGCGAGCTTGCCTGTCTGTCCTTTATAGGTGT
CCGAACTCAGCTTTGACAGCTCCACACTCAGGGAGTTCCTGGCAGTGGCCTGTCTGATGG
GAGCTGAAAGCCTTGATAAAACAAAACATTAGATGGGGTACTCAGAAGCCTTCAGCAAAG
TTCCACCCAGTTACTATAATGGGGATAAATATTGATTCCCTTTTTGTAGCGCTCAAATTC
TCGATTGCGCTTGCTGGGTTCAGTTCCTGGCTCTGCTGTTCACCAGCTGTGTAACCATGG
AAAGTAATTTCATCTCTCTGTGCCCAAGTTCTTGACCTACAATATTAGTATACCTATCTC
ATGACATTGTAGTGAGGATTAAATTTAACATATTAAAAGTTTAGAAGGCTGCCTAGTATT
AAAATTAAGAGAGCTTTCCTTGATACATTTTATTGGCGGAGAAACCAGAAGCACAGAGAC
ATGTAGTTACCCAGTGATTTATGAGGTGAGCACGTTAAAGTTGTTTAACCTTTGCAATGT
CATTGCAGTGGGAGTTTACAGATGGCAGGGGATTGGTTAAAAGTGCTTATTTTATGCAGA
TATTTTAAGAAGACTATTTAAGTTGATTATCAGAGGCATTTATAAGAAATAACTTAAATT
TCACTTACGTTCATGAAATAATCTAGGTTCAGTTTTGATTACATGGCCTAACTGGCTTGG
TCAGTTTGGGGAATTTTCAAGCCTGGTCTCCATTTTATTTTATTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCGTGCCGCCGCCACGCATCACGCGGGGGGCGGGAGTTGACAGACTGTCTCTGGCTGG
ATTTCGGCGGCCCCGGAACCGTGGAAGAGGTTCCCGAGGGCCGCTACGATGCCCTCCCCG
GAGCGGGTCAGTCAGCTCCTGGACCTGTGAGTTGGCCCCGGCCCGCCTCCCTTCGCCCCG
CCGCGGCACCACCCGCCGCCCCGCGCGGCTCTCCTTCCCCGCCCCCTTCCCGCCTCTGAC
CGCTGAGAAGGCCCCGCAGGTGTTTCCACTCCTGGATCCCAGACTTGTGCTCTCCTCACT
GAGGAAGGTCAGGCCAAAAGGGTTGCCTAGCGAGCTTGCCTGTCTGTCCTTTATAGGTGT
CCGAACTCAGCTTTGACAGCTCCACACTCAGGGAGTTCCTGGCAGTGGCCTGTCTGATGG
GAGCTGAAAGCCTTGATAAAACAAAACATTAGATGGGGTACTCAGAAGCCTTCAGCAAAG
TTCCACCCAGTTACTATAATGGGGATAAATATTGATTCCCTTTTTGTAGCGCTCAAATTC
TCGATTGCGCTTGCTGGGTTCAGTTCCTGGCTCTGCTGTTCACCAGCTGTGTAACCATGG
AAAGTAATTTCATCTCTCTGTGCCCAAGTTCTTGACCTACAATATTAGTATACCTATCTC
ATGACATTGTAGTGAGGATTAAATTTAACATATTAAAAGTTTAGAAGGCTGCCTAGTATT
AAAATTAAGAGAGCTTTCCTTGATACATTTTATTGGCGGAGAAACCAGAAGCACAGAGAC
ATGTAGTTACCCAGTGATTTATGAGGTGAGCACGTTAAAGTTGTTTAACCTTTGCAATGT
CATTGCAGTGGGAGTTTACAGATGGCAGGGGATTGGTTAAAAGTGCTTATTTTATGCAGA
TATTTTAAGAAGACTATTTAAGTTGATTATCAGAGGCATTTATAAGAAATAACTTAAATT
TCACTTACGTTCATGAAATAATCTAGGTTCAGTTTTGATTACATGGCCTAACTGGCTTGG
TCAGTTTGGGGAATTTTCAAGCCTGGTCTCCATTTTATTTTATTCAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               16-615, gnl|bosTau2|chr5 (48217616-48218225)
               

               
               16-615, gnl|Hg17|chr12 (31773301-31772653)
               


               
               780-1062, gnl|bosTau2|chr5 (48218518-48218790)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-615, gnl|bosTau2|chr5 (48217616-48218225)
               

               
               16-615, gnl|Hg17|chr12 (31773301-31772653)
               


               
               780-1062, gnl|bosTau2|chr5 (48218518-48218790)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	16-615, gnl\|bosTau2\|chr5 (48217616-48218225)
	16-615, gnl\|Hg17\|chr12 (31773301-31772653)

	780-1062, gnl\|bosTau2\|chr5 (48218518-48218790)