Non-Coding RNA Search

Ss1.1-Liv1-LVRM10119A12.5.5

Sequence:


               
               AAGCCAAGAAGTCGGTAACAAGAACAGCAACGAGTACCGGGTGCGGCGTGAGCGCAACAA
CATCGCGGTGCGCAAGAGCCGGGACAAGGCCAAGCAGCGCAACGTGGAGACTCAACAGAA
GGTGCTGGAGCTGACCAGTGACAATGACCGCCTGCGCAAGCGGGTGGAACAACTGAGCCG
CGAACTGGACACGCTGCGGGGCATCTTCCGCCAGCTGCCCGAGAGCTCCCTGGTCAAGGC
CATGGGCAACTGCGCTTGAGGCGCGCGGCGGCGGGACCGCCCTGGGCCGGCCGCTGCCTG
GGACCCAGGGAGTGGTTTCGGGTCTCCAGATCTCAAGACTGCCGGAGCCGCGCAAGCCAG
GGCTAGGAGATTCGGGTGCCGCCTGAGAGCCTGGCCTGCCGCGTGTGCCCCTTGCCTTCC
TCGGCGCCGGACACGGTGCGTCTAAGATGAGGGATCAGGCAGAGAGGAGAAGCGCCGTGG
GGCTGAGCCGGGAGCCCGGCAACTCTAGTATTAAAGGAATAACCCTGTGCCTTGGAAACG
CAAACTCACCGCTCCGATTCCTACCGAGTAGGGGGAGCAAATATGTGCCTTGTCATTTTA
TTTGAGAGGGTTCCTGCTGCAGCAGGCCCCTCTCCCCCGCAATAGAAGGAGGGGTGCAGC
CCCCCGGGGGGGGGCAGGAGGAAGGTTCAGGGAGCAGAGATCCCTATAAACCAGCCCCAG
CCGCTCCTCAGCGCCTGTCCTTGGAGGGGAGGAAACACAGGGACTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCAAGAAGTCGGTAACAAGAACAGCAACGAGTACCGGGTGCGGCGTGAGCGCAACAA
CATCGCGGTGCGCAAGAGCCGGGACAAGGCCAAGCAGCGCAACGTGGAGACTCAACAGAA
GGTGCTGGAGCTGACCAGTGACAATGACCGCCTGCGCAAGCGGGTGGAACAACTGAGCCG
CGAACTGGACACGCTGCGGGGCATCTTCCGCCAGCTGCCCGAGAGCTCCCTGGTCAAGGC
CATGGGCAACTGCGCTTGAGGCGCGCGGCGGCGGGACCGCCCTGGGCCGGCCGCTGCCTG
GGACCCAGGGAGTGGTTTCGGGTCTCCAGATCTCAAGACTGCCGGAGCCGCGCAAGCCAG
GGCTAGGAGATTCGGGTGCCGCCTGAGAGCCTGGCCTGCCGCGTGTGCCCCTTGCCTTCC
TCGGCGCCGGACACGGTGCGTCTAAGATGAGGGATCAGGCAGAGAGGAGAAGCGCCGTGG
GGCTGAGCCGGGAGCCCGGCAACTCTAGTATTAAAGGAATAACCCTGTGCCTTGGAAACG
CAAACTCACCGCTCCGATTCCTACCGAGTAGGGGGAGCAAATATGTGCCTTGTCATTTTA
TTTGAGAGGGTTCCTGCTGCAGCAGGCCCCTCTCCCCCGCAATAGAAGGAGGGGTGCAGC
CCCCCGGGGGGGGGCAGGAGGAAGGTTCAGGGAGCAGAGATCCCTATAAACCAGCCCCAG
CCGCTCCTCAGCGCCTGTCCTTGGAGGGGAGGAAACACAGGGACTTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q66WL4_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q66WL4_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-237, - strand, RNAz p=0.54208
               

               
               631-758, + strand, RNAz p=0.960168

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-237, - strand, RNAz p=0.54208
               

               
               631-758, + strand, RNAz p=0.960168

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-617, gnl|bosTau2|chr18 (36587846-36587229)
               

               
               1-617, gnl|Hg17|chr19 (38484343-38483688)
               

               
               1-617, gnl|Mm7|chr7 (32009953-32010589)
               


               
               5-260, gnl|bosTau2|chr10 (13947124-13947383)
               

               
               5-260, gnl|Hg17|chr14 (22656794-22656535)
               

               
               5-260, gnl|Mm7|chr14 (49577731-49577472)
               


               
               631-768, gnl|bosTau2|chr18 (36587234-36587101)
               

               
               631-768, gnl|Hg17|chr19 (38483717-38483555)
               

               
               631-768, gnl|Mm7|chr7 (32010584-32010734)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-617, gnl|bosTau2|chr18 (36587846-36587229)
               

               
               1-617, gnl|Hg17|chr19 (38484343-38483688)
               

               
               1-617, gnl|Mm7|chr7 (32009953-32010589)
               


               
               5-260, gnl|bosTau2|chr10 (13947124-13947383)
               

               
               5-260, gnl|Hg17|chr14 (22656794-22656535)
               

               
               5-260, gnl|Mm7|chr14 (49577731-49577472)
               


               
               631-768, gnl|bosTau2|chr18 (36587234-36587101)
               

               
               631-768, gnl|Hg17|chr19 (38483717-38483555)
               

               
               631-768, gnl|Mm7|chr7 (32010584-32010734)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	79-237, - strand, RNAz p=0.54208
	631-758, + strand, RNAz p=0.960168

	1-617, gnl\|bosTau2\|chr18 (36587846-36587229)
	1-617, gnl\|Hg17\|chr19 (38484343-38483688)
	1-617, gnl\|Mm7\|chr7 (32009953-32010589)

	5-260, gnl\|bosTau2\|chr10 (13947124-13947383)
	5-260, gnl\|Hg17\|chr14 (22656794-22656535)
	5-260, gnl\|Mm7\|chr14 (49577731-49577472)

	631-768, gnl\|bosTau2\|chr18 (36587234-36587101)
	631-768, gnl\|Hg17\|chr19 (38483717-38483555)
	631-768, gnl\|Mm7\|chr7 (32010584-32010734)