Non-Coding RNA Search

Ss1.1-Liv1-LVRM10121G12.5

Sequence:


               
               GGAAAAGGTACCATTTGAAAACTCCTTTAACCTGGCCTTTTGATACATTTGGAGCAGTTG
TCTCCTTAGCAGCAGCCCCGGTGTGGATACTTCAGACAAAATTATGGAGCCACAGAGTCA
GAATTTGAAGACAACCCCTCCACTGACTTTAGAAAGATTTCACATTTCTGAAGAGTATGG
CTTTCTTCTTCCAAATCCTCTGAAAGAACTCCCCGATCATTACAGGCCCTGGATGGAAAT
TGCCAGCAAACTCCCTCACTTGATTGACACTCACCAGCTTCGAGCTCAAGTGAACAAGAT
GCCCCTCTTGAACTGCCAGTTCCTCACGGGTTACAAGGAGCAGCACCTGGCCCACCTGAT
CCTGAGCTTTATCACCATGGGGTATGTCTGGCAGGAAGGAGAGACGCAGCCCAAAGAGGT
TCTGCCAAGAAACCTTGCCCTTCCCTTTGTGGAGGTTTCCAGGAACTTGGGGCTCCCCCC
TATCCTGGTTCATGCAGACTTGGTGCTGGCCAACTGGGCTGCAAGGAATCCGGAAAAACC
CCTGGAAATAAGGAACCTGGACCCCATTGTCTCCTTTCCTGGGGGAGAAAGCATCCGTGG
TTTTATACTGGTGACTGTTTTGGTGGAGAAAGCAGCGGTACCCGGGATTAAGGCCCTTGT
TCAGGCAGTGAATGCCCTCTTGAAGCCCAGCCCGGACTGCCTGCTCCAAGCCCTGCAGCG
ACTGACACTCTCCATCCAGGATATCACCAGAGCCTTGGGACAAATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGGTACCATTTGAAAACTCCTTTAACCTGGCCTTTTGATACATTTGGAGCAGTTG
TCTCCTTAGCAGCAGCCCCGGTGTGGATACTTCAGACAAAATTATGGAGCCACAGAGTCA
GAATTTGAAGACAACCCCTCCACTGACTTTAGAAAGATTTCACATTTCTGAAGAGTATGG
CTTTCTTCTTCCAAATCCTCTGAAAGAACTCCCCGATCATTACAGGCCCTGGATGGAAAT
TGCCAGCAAACTCCCTCACTTGATTGACACTCACCAGCTTCGAGCTCAAGTGAACAAGAT
GCCCCTCTTGAACTGCCAGTTCCTCACGGGTTACAAGGAGCAGCACCTGGCCCACCTGAT
CCTGAGCTTTATCACCATGGGGTATGTCTGGCAGGAAGGAGAGACGCAGCCCAAAGAGGT
TCTGCCAAGAAACCTTGCCCTTCCCTTTGTGGAGGTTTCCAGGAACTTGGGGCTCCCCCC
TATCCTGGTTCATGCAGACTTGGTGCTGGCCAACTGGGCTGCAAGGAATCCGGAAAAACC
CCTGGAAATAAGGAACCTGGACCCCATTGTCTCCTTTCCTGGGGGAGAAAGCATCCGTGG
TTTTATACTGGTGACTGTTTTGGTGGAGAAAGCAGCGGTACCCGGGATTAAGGCCCTTGT
TCAGGCAGTGAATGCCCTCTTGAAGCCCAGCCCGGACTGCCTGCTCCAAGCCCTGCAGCG
ACTGACACTCTCCATCCAGGATATCACCAGAGCCTTGGGACAAATGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34536196|dbj|BAC87573.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34536196|dbj|BAC87573.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               291-467, gnl|bosTau2|chr27 (22977942-22978117)
               

               
               291-467, gnl|Hg17|chr8 (39955736-39955913)
               

               
               291-467, gnl|Mm7|chr8 (23339780-23339609)
               


               
               651-768, gnl|bosTau2|chr27 (22986491-22986608)
               

               
               651-768, gnl|Hg17|chr8 (39966395-39966512)
               

               
               651-768, gnl|Mm7|chr8 (23332559-23332442)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               291-467, gnl|bosTau2|chr27 (22977942-22978117)
               

               
               291-467, gnl|Hg17|chr8 (39955736-39955913)
               

               
               291-467, gnl|Mm7|chr8 (23339780-23339609)
               


               
               651-768, gnl|bosTau2|chr27 (22986491-22986608)
               

               
               651-768, gnl|Hg17|chr8 (39966395-39966512)
               

               
               651-768, gnl|Mm7|chr8 (23332559-23332442)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cli (0.152812)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	291-467, gnl\|bosTau2\|chr27 (22977942-22978117)
	291-467, gnl\|Hg17\|chr8 (39955736-39955913)
	291-467, gnl\|Mm7\|chr8 (23339780-23339609)

	651-768, gnl\|bosTau2\|chr27 (22986491-22986608)
	651-768, gnl\|Hg17\|chr8 (39966395-39966512)
	651-768, gnl\|Mm7\|chr8 (23332559-23332442)