Non-Coding RNA Search

Ss1.1-Liv1-LVRM10123E02.5

Sequence:


               
               AAAGTGTGCGGCTCTGTTGCCTGAGTACTCCAGTCTCTGCGTTCCGAAAGCATGGCTTTC
CCTGCAGGATTTGGATGGGGGGCGGCCACCTCAGCTTATCAAGTGGAAGGAGGCTGGGAT
GCAGATGGAAAAGGCCCTAGTGTCTGGGACACATTCACCCATCAGGGAAGAGAGAGAGTT
TTCAAGAACCAGACTGGTGATGTAGCTTGTGGCAGCTACACTCTGTGGGAGGAAGATTTG
AAATGTATCAAACAGCTTGGATTGACTCATTACCGCTTCTCTCTTTCCTGGTCACGTCTG
TTACCTGATGGGACGACAGGTTTCATCAACCAGAAAGGAATTGACTATTACAACAAGATC
ATTGATGACTTGTTAAAAAACAGGGTCACACCCATCGTGACCCTCTTCCACTTTGATTTG
CCTCAGGCCTTAGAAGACCAAGGAGGGTGGTTGTCAGAGACTATCATTGAATCTTTTGAC
AACTATGCCCGGTTTTGTTTCAGTACGTTTGGGGATCGAGTCAAGCAGTGGATCACTATC
AATGAGCCTAATATTTTCTCCCTGATGGCATATGAGTTTGGTATATTTCCTCCTGGTGTG
CCTCACCCTGGAACTAAAGGTTATCAGGCAGCTCATAACTTGATTAAAGCTCACGCCAGA
TCATGGCACAGCTATGATTCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTGTGCGGCTCTGTTGCCTGAGTACTCCAGTCTCTGCGTTCCGAAAGCATGGCTTTC
CCTGCAGGATTTGGATGGGGGGCGGCCACCTCAGCTTATCAAGTGGAAGGAGGCTGGGAT
GCAGATGGAAAAGGCCCTAGTGTCTGGGACACATTCACCCATCAGGGAAGAGAGAGAGTT
TTCAAGAACCAGACTGGTGATGTAGCTTGTGGCAGCTACACTCTGTGGGAGGAAGATTTG
AAATGTATCAAACAGCTTGGATTGACTCATTACCGCTTCTCTCTTTCCTGGTCACGTCTG
TTACCTGATGGGACGACAGGTTTCATCAACCAGAAAGGAATTGACTATTACAACAAGATC
ATTGATGACTTGTTAAAAAACAGGGTCACACCCATCGTGACCCTCTTCCACTTTGATTTG
CCTCAGGCCTTAGAAGACCAAGGAGGGTGGTTGTCAGAGACTATCATTGAATCTTTTGAC
AACTATGCCCGGTTTTGTTTCAGTACGTTTGGGGATCGAGTCAAGCAGTGGATCACTATC
AATGAGCCTAATATTTTCTCCCTGATGGCATATGAGTTTGGTATATTTCCTCCTGGTGTG
CCTCACCCTGGAACTAAAGGTTATCAGGCAGCTCATAACTTGATTAAAGCTCACGCCAGA
TCATGGCACAGCTATGATTCCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55622290|ref|XP_517125.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55622290|ref|XP_517125.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               336-684, gnl|bosTau2|chr6 (20431033-20430685)
               

               
               336-684, gnl|Hg17|chr4 (22425186-22425534)
               

               
               336-684, gnl|Mm7|chr5 (49671838-49672186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-684, gnl|bosTau2|chr6 (20431033-20430685)
               

               
               336-684, gnl|Hg17|chr4 (22425186-22425534)
               

               
               336-684, gnl|Mm7|chr5 (49671838-49672186)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	336-684, gnl\|bosTau2\|chr6 (20431033-20430685)
	336-684, gnl\|Hg17\|chr4 (22425186-22425534)
	336-684, gnl\|Mm7\|chr5 (49671838-49672186)