Non-Coding RNA Search

Ss1.1-Liv1-LVRM10123H07.5

Sequence:


               
               AAGATGGCGGCGGGGAGGTAGGCAGAGCCGGACGCTGCTGCTGCCGCCGCCACCGCCGCC
TCCGCTCCAGTCGCCTCTGGTCCTTCAAGCTGTCGCCGCCCGGGAGAAGGTGTTCCAGCG
TCAGATCCTGTGGGGAAAATGGTGGAGCCAGGGCAAGATTTACTGCTTGCTGCTTTGAGT
GAGAGTGGAATTAGTCCGAATGACCTCTTTGATATTGATGGTGGAGATGCGGGGCTTGCA
ACTCTGACACCTACTCCTCCAGTACAACAGTCAGTGCCACTTAGTGCATTAGAACTAAAT
TTGGAGACTGAAGCAGCAGTTCCTGTTAAACAGGAACCAGAGACGGTATCTACTCCAGCA
TTATTAAATGTTAGGCAGCCTCCATCTACGACAACATTTGTGCTGAATCAAATAAATCAG
CTTCCAACCTTGGGATCTACAATTGTAATGACTAAAACACCACCTGTAACAACGAATAGG
CAAACCATCACTTTAACAAAATTTATTCAAACTACTGCAAACACACGTCCCTCGGTCTCA
GCACCAGCAGTGCGAAATGCCATGACCTCTGCACCTTCAAAAGACCAGGTTCAACTGAAG
GACCTACTAAAAAATAATAGTCTGAATGAACTAATGAAACTGAAGCCACCAGCCAATATT
GCTCAGCCAGTTGCAACAGCAGCCACTGACGTAAGCAATGGCACAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGGCGGCGGGGAGGTAGGCAGAGCCGGACGCTGCTGCTGCCGCCGCCACCGCCGCC
TCCGCTCCAGTCGCCTCTGGTCCTTCAAGCTGTCGCCGCCCGGGAGAAGGTGTTCCAGCG
TCAGATCCTGTGGGGAAAATGGTGGAGCCAGGGCAAGATTTACTGCTTGCTGCTTTGAGT
GAGAGTGGAATTAGTCCGAATGACCTCTTTGATATTGATGGTGGAGATGCGGGGCTTGCA
ACTCTGACACCTACTCCTCCAGTACAACAGTCAGTGCCACTTAGTGCATTAGAACTAAAT
TTGGAGACTGAAGCAGCAGTTCCTGTTAAACAGGAACCAGAGACGGTATCTACTCCAGCA
TTATTAAATGTTAGGCAGCCTCCATCTACGACAACATTTGTGCTGAATCAAATAAATCAG
CTTCCAACCTTGGGATCTACAATTGTAATGACTAAAACACCACCTGTAACAACGAATAGG
CAAACCATCACTTTAACAAAATTTATTCAAACTACTGCAAACACACGTCCCTCGGTCTCA
GCACCAGCAGTGCGAAATGCCATGACCTCTGCACCTTCAAAAGACCAGGTTCAACTGAAG
GACCTACTAAAAAATAATAGTCTGAATGAACTAATGAAACTGAAGCCACCAGCCAATATT
GCTCAGCCAGTTGCAACAGCAGCCACTGACGTAAGCAATGGCACAGTA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               136-270, gnl|bosTau2|chr17 (26402154-26402020)
               

               
               136-270, gnl|Hg17|chr12 (122359871-122359737)
               

               
               136-270, gnl|Mm7|chr5 (123660393-123660262)
               


               
               375-683, gnl|bosTau2|chr17 (26399441-26399133)
               

               
               375-683, gnl|Hg17|chr12 (122354995-122354687)
               

               
               375-683, gnl|Mm7|chr5 (123656243-123655935)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               136-270, gnl|bosTau2|chr17 (26402154-26402020)
               

               
               136-270, gnl|Hg17|chr12 (122359871-122359737)
               

               
               136-270, gnl|Mm7|chr5 (123660393-123660262)
               


               
               375-683, gnl|bosTau2|chr17 (26399441-26399133)
               

               
               375-683, gnl|Hg17|chr12 (122354995-122354687)
               

               
               375-683, gnl|Mm7|chr5 (123656243-123655935)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	136-270, gnl\|bosTau2\|chr17 (26402154-26402020)
	136-270, gnl\|Hg17\|chr12 (122359871-122359737)
	136-270, gnl\|Mm7\|chr5 (123660393-123660262)

	375-683, gnl\|bosTau2\|chr17 (26399441-26399133)
	375-683, gnl\|Hg17\|chr12 (122354995-122354687)
	375-683, gnl\|Mm7\|chr5 (123656243-123655935)