Non-Coding RNA Search

Ss1.1-Liv1-LVRM10124A08.5

Sequence:


               
               CAGAAGTAGTAGGAAGTGAGCTGTTCGGAGGCAGGAGGGTCTATTCTTTGCCAGAGGGGG
GACCAGAGTCCCCGCGCGAGCCGCCTGAGGACGGGGATGCCGAGGACGCGCGCGAGCCGG
GCAGGGCTGCTCTGGGCACCGTCCGGGTAGGACCCGCACCGCCTTCCCAAGGCTTTTGGC
AGGCATCTGCTCGGAAGAAGAACTTGGGATCTTTCTGGGAACCCCCGCCCCGGCTGGATT
GGCCGAGCAAGCCTGGAAAATGGTAAATGATCATTTGGATCAATTACAGGCTTTTAGCTG
GCTTGTCTGTCATAATTCATGATTCGAGGCTGGGAAAAAGACCAACAGCCTACGTGCCAA
AAAGGGGGCAGAGTTTGATGGAGTTGGGTGGACTTTCCTATGCCATTTGCCTCCACACCT
AGAGGATAAGCACTTTTGCAGACATTCGGTGCAGGGGAGATCATGTTTGACTGTATGGAT
GTTCTGTCAGTGAGTCCTGGGCAAATCCTGGATTTCTACACTGCGAGCCCGTCTTCCTGC
ATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGTAGTAGGAAGTGAGCTGTTCGGAGGCAGGAGGGTCTATTCTTTGCCAGAGGGGG
GACCAGAGTCCCCGCGCGAGCCGCCTGAGGACGGGGATGCCGAGGACGCGCGCGAGCCGG
GCAGGGCTGCTCTGGGCACCGTCCGGGTAGGACCCGCACCGCCTTCCCAAGGCTTTTGGC
AGGCATCTGCTCGGAAGAAGAACTTGGGATCTTTCTGGGAACCCCCGCCCCGGCTGGATT
GGCCGAGCAAGCCTGGAAAATGGTAAATGATCATTTGGATCAATTACAGGCTTTTAGCTG
GCTTGTCTGTCATAATTCATGATTCGAGGCTGGGAAAAAGACCAACAGCCTACGTGCCAA
AAAGGGGGCAGAGTTTGATGGAGTTGGGTGGACTTTCCTATGCCATTTGCCTCCACACCT
AGAGGATAAGCACTTTTGCAGACATTCGGTGCAGGGGAGATCATGTTTGACTGTATGGAT
GTTCTGTCAGTGAGTCCTGGGCAAATCCTGGATTTCTACACTGCGAGCCCGTCTTCCTGC
ATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13242909|gb|AAB21367.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13242909|gb|AAB21367.2|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               196-354, - strand, RNAz p=0.882277
               

               
               459-576, + strand, RNAz p=0.544389

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-354, - strand, RNAz p=0.882277
               

               
               459-576, + strand, RNAz p=0.544389

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000965, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000965, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr27 (26929448-26928872)
               

               
               1-576, gnl|Hg17|chr3 (25444762-25445340)
               

               
               1-576, gnl|Mm7|chr14 (14389915-14389344)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr27 (26929448-26928872)
               

               
               1-576, gnl|Hg17|chr3 (25444762-25445340)
               

               
               1-576, gnl|Mm7|chr14 (14389915-14389344)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	196-354, - strand, RNAz p=0.882277
	459-576, + strand, RNAz p=0.544389

	1-576, gnl\|bosTau2\|chr27 (26929448-26928872)
	1-576, gnl\|Hg17\|chr3 (25444762-25445340)
	1-576, gnl\|Mm7\|chr14 (14389915-14389344)