Ss1.1-Liv1-LVRM10125A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCTCTCTTCCCCCGCAGTCTCTGTGCGTTGAAGCCGGAGACCGCGGCGGCCTCTGCT AGGACCCTCCGCCCCAGAGCCACCGGCCGGAGCCGCAGCCTCAGCCGCAGCGCCCCCGCC GCCTGTCCCCTCCCCTGCCGCCTCCGCCGGAGCCACCTCGCGCACTCTGGGGTATGGCCG TCAATGTGTACTCCACATCCGTGACCAGCGAGAATCTGAGTCGCCATGACATGCTTGCGT GGGTCAACGACTCCCTGCACCTCAACTATACCAAGATAGAACAGCTCTGCTCAGGGGCCG CCTACTGCCAGTTCATGGACATGCTCTTCCCTGGCTGTGTGCACTTGAGGAAGGTGAAGT TCCAGGCCAAGCTAGAGCATGAATACATCCACAACTTCAAGGTGCTGCAAGCAGCTTTCA AGAAGATGGGTGTTGACAAAATCATTCCTGTAGAGAAATTAGTGAAAGGAAAATTCCAAG ATAATTTTGAGTTTATTCAGTGGTTTAAGAAATTCTTTGACGCAAACTATGATGGAAAGG ATTACAACCCTCTGCTGGCGCGGCAGGGCCAGGACGTAGCACCACCTCCTAACCCAGTTC CACAGAGGACGTCCCCCACGGGCCAACTCATTGGCACAGCAGTTCCACAGAGGACGTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCTCTCTTCCCCCGCAGTCTCTGTGCGTTGAAGCCGGAGACCGCGGCGGCCTCTGCT AGGACCCTCCGCCCCAGAGCCACCGGCCGGAGCCGCAGCCTCAGCCGCAGCGCCCCCGCC GCCTGTCCCCTCCCCTGCCGCCTCCGCCGGAGCCACCTCGCGCACTCTGGGGTATGGCCG TCAATGTGTACTCCACATCCGTGACCAGCGAGAATCTGAGTCGCCATGACATGCTTGCGT GGGTCAACGACTCCCTGCACCTCAACTATACCAAGATAGAACAGCTCTGCTCAGGGGCCG CCTACTGCCAGTTCATGGACATGCTCTTCCCTGGCTGTGTGCACTTGAGGAAGGTGAAGT TCCAGGCCAAGCTAGAGCATGAATACATCCACAACTTCAAGGTGCTGCAAGCAGCTTTCA AGAAGATGGGTGTTGACAAAATCATTCCTGTAGAGAAATTAGTGAAAGGAAAATTCCAAG ATAATTTTGAGTTTATTCAGTGGTTTAAGAAATTCTTTGACGCAAACTATGATGGAAAGG ATTACAACCCTCTGCTGGCGCGGCAGGGCCAGGACGTAGCACCACCTCCTAACCCAGTTC CACAGAGGACGTCCCCCACGGGCCAACTCATTGGCACAGCAGTTCCACAGAGGACGTCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 321-440, + strand, RNAz p=0.717471 | |
| 321-440, - strand, RNAz p=0.717471 | |
| 321-440, + strand, RNAz p=0.92209 | |
| 321-440, - strand, RNAz p=0.92209 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 321-440, + strand, RNAz p=0.717471 | |
| 321-440, - strand, RNAz p=0.717471 | |
| 321-440, + strand, RNAz p=0.92209 | |
| 321-440, - strand, RNAz p=0.92209 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr11 (55341759-55341945) | |
| 1-180, gnl|Hg17|chr2 (27105156-27105335) | |
| 1-180, gnl|Mm7|chr5 (29847249-29847428) | |
| 287-440, gnl|bosTau2|chr11 (55393385-55393538) | |
| 287-440, gnl|canFam2|chr17 (24004391-24004503) | |
| 287-440, gnl|danRer3|chr4 (964277-964384) | |
| 287-440, gnl|dasNov1|scaffold_7242 (13883-13781) | |
| 287-440, gnl|echTel1|scaffold_76960 (1137-1035) | |
| 287-440, gnl|fr1|chrUn (2274599-2274701) | |
| 287-440, gnl|galGal2|chr20 (9813011-9813123) | |
| 287-440, gnl|hg17|chr2 (27157839-27157951) | |
| 287-440, gnl|Hg17|chr2 (27157843-27157996) | |
| 287-440, gnl|loxAfr1|scaffold_2034 (94376-94264) | |
| 287-440, gnl|mm7|chr5 (29895002-29895114) | |
| 287-440, gnl|Mm7|chr5 (29895006-29895159) | |
| 287-440, gnl|monDom2|scaffold_1 (149284763-149284651) | |
| 287-440, gnl|oryCun1|scaffold_212490 (74205-74317) | |
| 287-440, gnl|panTro1|chr12 (28081096-28081208) | |
| 287-440, gnl|rheMac2|chr13 (26976525-26976637) | |
| 287-440, gnl|rn3|chr6 (25502794-25502682) | |
| 287-440, gnl|tetNig1|chr14 (1777078-1776976) | |
| 287-440, gnl|xenTro1|scaffold_1289 (98403-98292) | |
| 441-642, gnl|bosTau2|chr11 (55394052-55394253) | |
| 441-642, gnl|canFam2|chr17 (24005165-24005333) | |
| 441-642, gnl|danRer3|chr4 (965387-965553) | |
| 441-642, gnl|dasNov1|scaffold_7242 (13731-13576) | |
| 441-642, gnl|echTel1|scaffold_76960 (988-828) | |
| 441-642, gnl|fr1|chrUn (2274826-2274990) | |
| 441-642, gnl|galGal2|chr20 (9813970-9814135) | |
| 441-642, gnl|hg17|chr2 (27158606-27158774) | |
| 441-642, gnl|Hg17|chr2 (27158615-27158816) | |
| 441-642, gnl|loxAfr1|scaffold_2034 (93619-93451) | |
| 441-642, gnl|mm7|chr5 (29895711-29895879) | |
| 441-642, gnl|Mm7|chr5 (29895720-29895921) | |
| 441-642, gnl|monDom2|scaffold_1 (149283834-149283666) | |
| 441-642, gnl|oryCun1|scaffold_162059 (213-368) | |
| 441-642, gnl|panTro1|chr12 (28081861-28082029) | |
| 441-642, gnl|rheMac2|chr13 (26977294-26977462) | |
| 441-642, gnl|rn3|chr6 (25502090-25501922) | |
| 441-642, gnl|tetNig1|chr14 (1776788-1776623) | |
| 441-642, gnl|xenTro1|scaffold_1289 (96254-96090) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr11 (55341759-55341945) | |
| 1-180, gnl|Hg17|chr2 (27105156-27105335) | |
| 1-180, gnl|Mm7|chr5 (29847249-29847428) | |
| 287-440, gnl|bosTau2|chr11 (55393385-55393538) | |
| 287-440, gnl|canFam2|chr17 (24004391-24004503) | |
| 287-440, gnl|danRer3|chr4 (964277-964384) | |
| 287-440, gnl|dasNov1|scaffold_7242 (13883-13781) | |
| 287-440, gnl|echTel1|scaffold_76960 (1137-1035) | |
| 287-440, gnl|fr1|chrUn (2274599-2274701) | |
| 287-440, gnl|galGal2|chr20 (9813011-9813123) | |
| 287-440, gnl|hg17|chr2 (27157839-27157951) | |
| 287-440, gnl|Hg17|chr2 (27157843-27157996) | |
| 287-440, gnl|loxAfr1|scaffold_2034 (94376-94264) | |
| 287-440, gnl|mm7|chr5 (29895002-29895114) | |
| 287-440, gnl|Mm7|chr5 (29895006-29895159) | |
| 287-440, gnl|monDom2|scaffold_1 (149284763-149284651) | |
| 287-440, gnl|oryCun1|scaffold_212490 (74205-74317) | |
| 287-440, gnl|panTro1|chr12 (28081096-28081208) | |
| 287-440, gnl|rheMac2|chr13 (26976525-26976637) | |
| 287-440, gnl|rn3|chr6 (25502794-25502682) | |
| 287-440, gnl|tetNig1|chr14 (1777078-1776976) | |
| 287-440, gnl|xenTro1|scaffold_1289 (98403-98292) | |
| 441-642, gnl|bosTau2|chr11 (55394052-55394253) | |
| 441-642, gnl|canFam2|chr17 (24005165-24005333) | |
| 441-642, gnl|danRer3|chr4 (965387-965553) | |
| 441-642, gnl|dasNov1|scaffold_7242 (13731-13576) | |
| 441-642, gnl|echTel1|scaffold_76960 (988-828) | |
| 441-642, gnl|fr1|chrUn (2274826-2274990) | |
| 441-642, gnl|galGal2|chr20 (9813970-9814135) | |
| 441-642, gnl|hg17|chr2 (27158606-27158774) | |
| 441-642, gnl|Hg17|chr2 (27158615-27158816) | |
| 441-642, gnl|loxAfr1|scaffold_2034 (93619-93451) | |
| 441-642, gnl|mm7|chr5 (29895711-29895879) | |
| 441-642, gnl|Mm7|chr5 (29895720-29895921) | |
| 441-642, gnl|monDom2|scaffold_1 (149283834-149283666) | |
| 441-642, gnl|oryCun1|scaffold_162059 (213-368) | |
| 441-642, gnl|panTro1|chr12 (28081861-28082029) | |
| 441-642, gnl|rheMac2|chr13 (26977294-26977462) | |
| 441-642, gnl|rn3|chr6 (25502090-25501922) | |
| 441-642, gnl|tetNig1|chr14 (1776788-1776623) | |
| 441-642, gnl|xenTro1|scaffold_1289 (96254-96090) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) |