Ss1.1-Liv1-LVRM10130D03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTTTTTTTCAGGTTTTAAAATGCCTGAGCCAGCGAAGTCCGCTCCCGCTCCGAAGAAG GGCTCCAAGAAGGCGGTTACCAAGGCCCAGAAAAAGGACGGTAAGAAGCGAAAGCGCAGC CGCAAGGAGAGCTACTCCGTGTACGTGTACAAGGTGCTGAAGCAGGTCCACCCGGACACC GGCATCTCGTCCAAAGCCATGGGCATCATGAACTCCTTTGTCAACGACATTTTCGAGCGC ATCGCCGGCGAGGCCTCGCGGCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGG GAGATCCAGACGGCCGTGCGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCGTGTCC GAGGGCACCAAGGCTGTCACCAAGTACACCAGCTCGAAATAAACTTGCCAAGTAAGCATC TTTACACTTACCCCAAAGGCTCTTTTCAGAGCCACCCTGCTGGACACTGTTGCATCTCAC AAATAAGTCAGGAAAAATGACTGGTCCTAGAAGATAAAATATTTTTAACAGTCATGGAAG GATCAATAAGAACTTGGCTAACATTTATTTTAAGTATAAAAAAATGTTCATTGTAGAAAT TTGTAAAAAGAGAAATATATAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTTTTTTTCAGGTTTTAAAATGCCTGAGCCAGCGAAGTCCGCTCCCGCTCCGAAGAAG GGCTCCAAGAAGGCGGTTACCAAGGCCCAGAAAAAGGACGGTAAGAAGCGAAAGCGCAGC CGCAAGGAGAGCTACTCCGTGTACGTGTACAAGGTGCTGAAGCAGGTCCACCCGGACACC GGCATCTCGTCCAAAGCCATGGGCATCATGAACTCCTTTGTCAACGACATTTTCGAGCGC ATCGCCGGCGAGGCCTCGCGGCTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGG GAGATCCAGACGGCCGTGCGCCTGCTGCTGCCTGGGGAGCTGGCCAAGCACGCCGTGTCC GAGGGCACCAAGGCTGTCACCAAGTACACCAGCTCGAAATAAACTTGCCAAGTAAGCATC TTTACACTTACCCCAAAGGCTCTTTTCAGAGCCACCCTGCTGGACACTGTTGCATCTCAC AAATAAGTCAGGAAAAATGACTGGTCCTAGAAGATAAAATATTTTTAACAGTCATGGAAG GATCAATAAGAACTTGGCTAACATTTATTTTAAGTATAAAAAAATGTTCATTGTAGAAAT TTGTAAAAAGAGAAATATATAAAA |
| Coded protein: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 433-458, , RaveNnA Score=37.08 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-457, gnl|bosTau2|chr12 (1673601-1674054) | |
| 1-457, gnl|Hg17|chr6 (26381162-26381618) | |
| 22-403, gnl|bosTau2|chr10 (15825821-15825440) | |
| 22-403, gnl|Hg17|chr6 (27883663-27883282) | |
| 22-403, gnl|Mm7|chr13 (21120112-21120493) | |
| 459-622, gnl|bosTau2|chr23 (24235455-24235630) | |
| 459-622, gnl|canFam2|chr35 (27071076-27071248) | |
| 459-622, gnl|canFam2|chr35 (27070844-27071271) | |
| 459-622, gnl|danRer3|chr2 (47326228-47326010) | |
| 459-622, gnl|hg17|chr13 (20955721-20955912) | |
| 459-622, gnl|hg17|chr6 (26222878-26223317) | |
| 459-622, gnl|Hg17|chr6 (26223296-26223109) | |
| 459-622, gnl|loxAfr1|scaffold_16173 (49661-49489) | |
| 459-622, gnl|loxAfr1|scaffold_16173 (49989-49476) | |
| 459-622, gnl|mm7|chr13 (23058168-23058020) | |
| 459-622, gnl|mm7|chr13 (23058417-23057997) | |
| 459-622, gnl|Mm7|chr13 (23058016-23058168) | |
| 459-622, gnl|oryCun1|scaffold_197800 (50555-50697) | |
| 459-622, gnl|oryCun1|scaffold_197800 (50333-50736) | |
| 459-622, gnl|panTro1|chr14 (20116090-20116277) | |
| 459-622, gnl|panTro1|chr5 (26699329-26699767) | |
| 459-622, gnl|rheMac2|chr17 (2115803-2115976) | |
| 459-622, gnl|rheMac2|chr4 (26107902-26108346) | |
| 459-622, gnl|rn3|chr17 (48461894-48461737) | |
| 459-622, gnl|rn3|chr17 (48462129-48461714) | |
| 459-622, gnl|xenTro1|scaffold_11494 (403-543) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-457, gnl|bosTau2|chr12 (1673601-1674054) | |
| 1-457, gnl|Hg17|chr6 (26381162-26381618) | |
| 22-403, gnl|bosTau2|chr10 (15825821-15825440) | |
| 22-403, gnl|Hg17|chr6 (27883663-27883282) | |
| 22-403, gnl|Mm7|chr13 (21120112-21120493) | |
| 459-622, gnl|bosTau2|chr23 (24235455-24235630) | |
| 459-622, gnl|canFam2|chr35 (27071076-27071248) | |
| 459-622, gnl|canFam2|chr35 (27070844-27071271) | |
| 459-622, gnl|danRer3|chr2 (47326228-47326010) | |
| 459-622, gnl|hg17|chr13 (20955721-20955912) | |
| 459-622, gnl|hg17|chr6 (26222878-26223317) | |
| 459-622, gnl|Hg17|chr6 (26223296-26223109) | |
| 459-622, gnl|loxAfr1|scaffold_16173 (49661-49489) | |
| 459-622, gnl|loxAfr1|scaffold_16173 (49989-49476) | |
| 459-622, gnl|mm7|chr13 (23058168-23058020) | |
| 459-622, gnl|mm7|chr13 (23058417-23057997) | |
| 459-622, gnl|Mm7|chr13 (23058016-23058168) | |
| 459-622, gnl|oryCun1|scaffold_197800 (50555-50697) | |
| 459-622, gnl|oryCun1|scaffold_197800 (50333-50736) | |
| 459-622, gnl|panTro1|chr14 (20116090-20116277) | |
| 459-622, gnl|panTro1|chr5 (26699329-26699767) | |
| 459-622, gnl|rheMac2|chr17 (2115803-2115976) | |
| 459-622, gnl|rheMac2|chr4 (26107902-26108346) | |
| 459-622, gnl|rn3|chr17 (48461894-48461737) | |
| 459-622, gnl|rn3|chr17 (48462129-48461714) | |
| 459-622, gnl|xenTro1|scaffold_11494 (403-543) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.113366) | |
| ldo (0.0970026) |