Non-Coding RNA Search

Ss1.1-Liv1-LVRM10131B11.5

Sequence:


               
               ATAAGAGCCTTGAGGCCTTTTTAAAAAGGCGCTTGAAAAGGAAGCGGACAAAGGAAAACT
GAAATTAAGAGGATTTTCCAGTCTGTCTCTGGTGGCTGGTCCAGAAGGATGCCTCAGTTC
CTGCTTCTCACCTGCCTCTTTATCACAATAACACTCGTGTCACCAAAGGCCCTAGACCCT
TGTTCTGCTTACATCAGCCTGAATGAGCCGTGGAGGAACACTGACCACCAATTTGATGAG
TCTCAAGGTTCCCCTCTGTGTGACAACAGTGTGGATGGGGAGTGGTACCGCTTCACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGAGCCTTGAGGCCTTTTTAAAAAGGCGCTTGAAAAGGAAGCGGACAAAGGAAAACT
GAAATTAAGAGGATTTTCCAGTCTGTCTCTGGTGGCTGGTCCAGAAGGATGCCTCAGTTC
CTGCTTCTCACCTGCCTCTTTATCACAATAACACTCGTGTCACCAAAGGCCCTAGACCCT
TGTTCTGCTTACATCAGCCTGAATGAGCCGTGGAGGAACACTGACCACCAATTTGATGAG
TCTCAAGGTTCCCCTCTGTGTGACAACAGTGTGGATGGGGAGTGGTACCGCTTCACAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.910688

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.910688

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152635, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152635, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-169, gnl|bosTau2|chr28 (23849555-23849722)
               

               
               1-169, gnl|canFam2|chr4 (26724393-26724711)
               

               
               1-169, gnl|dasNov1|scaffold_9112 (48263-48578)
               

               
               1-169, gnl|echTel1|scaffold_165529 (736-403)
               

               
               1-169, gnl|galGal2|chr6 (10535093-10534779)
               

               
               1-169, gnl|hg17|chr10 (74323308-74323630)
               

               
               1-169, gnl|Hg17|chr10 (74323456-74323623)
               

               
               1-169, gnl|loxAfr1|scaffold_47232 (9216-8729)
               

               
               1-169, gnl|mm7|chr10 (58960123-58959813)
               

               
               1-169, gnl|Mm7|chr10 (58959983-58959818)
               

               
               1-169, gnl|monDom2|scaffold_14 (956734-957055)
               

               
               1-169, gnl|oryCun1|scaffold_161066 (15115-14790)
               

               
               1-169, gnl|panTro1|chr8_random (39773840-39774164)
               

               
               1-169, gnl|rheMac2|chr9 (64050830-64050504)
               

               
               1-169, gnl|rn3|chrUn (15015154-15015472)
               

               
               1-169, gnl|xenTro1|scaffold_171 (878777-878459)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr28 (23849555-23849722)
               

               
               1-169, gnl|canFam2|chr4 (26724393-26724711)
               

               
               1-169, gnl|dasNov1|scaffold_9112 (48263-48578)
               

               
               1-169, gnl|echTel1|scaffold_165529 (736-403)
               

               
               1-169, gnl|galGal2|chr6 (10535093-10534779)
               

               
               1-169, gnl|hg17|chr10 (74323308-74323630)
               

               
               1-169, gnl|Hg17|chr10 (74323456-74323623)
               

               
               1-169, gnl|loxAfr1|scaffold_47232 (9216-8729)
               

               
               1-169, gnl|mm7|chr10 (58960123-58959813)
               

               
               1-169, gnl|Mm7|chr10 (58959983-58959818)
               

               
               1-169, gnl|monDom2|scaffold_14 (956734-957055)
               

               
               1-169, gnl|oryCun1|scaffold_161066 (15115-14790)
               

               
               1-169, gnl|panTro1|chr8_random (39773840-39774164)
               

               
               1-169, gnl|rheMac2|chr9 (64050830-64050504)
               

               
               1-169, gnl|rn3|chrUn (15015154-15015472)
               

               
               1-169, gnl|xenTro1|scaffold_171 (878777-878459)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	1-169, gnl\|bosTau2\|chr28 (23849555-23849722)
	1-169, gnl\|canFam2\|chr4 (26724393-26724711)
	1-169, gnl\|dasNov1\|scaffold_9112 (48263-48578)
	1-169, gnl\|echTel1\|scaffold_165529 (736-403)
	1-169, gnl\|galGal2\|chr6 (10535093-10534779)
	1-169, gnl\|hg17\|chr10 (74323308-74323630)
	1-169, gnl\|Hg17\|chr10 (74323456-74323623)
	1-169, gnl\|loxAfr1\|scaffold_47232 (9216-8729)
	1-169, gnl\|mm7\|chr10 (58960123-58959813)
	1-169, gnl\|Mm7\|chr10 (58959983-58959818)
	1-169, gnl\|monDom2\|scaffold_14 (956734-957055)
	1-169, gnl\|oryCun1\|scaffold_161066 (15115-14790)
	1-169, gnl\|panTro1\|chr8_random (39773840-39774164)
	1-169, gnl\|rheMac2\|chr9 (64050830-64050504)
	1-169, gnl\|rn3\|chrUn (15015154-15015472)
	1-169, gnl\|xenTro1\|scaffold_171 (878777-878459)