Non-Coding RNA Search

Ss1.1-Liv1-LVRM10138H04.5

Sequence:


               
               AGTCCTCGAGGCGTCGGTGCTCAGCGGTGTTGGAATTCTGTTGCTTGCCGGCCTGTGCGC
GCGTGCGCGGACATGGCCTCAAACGACTATACCCAACAAGCAACCCAAAGCTACGGGGCC
TACCCCACCCAGCCTGGGCAGGGCTATTCCCAGCAGAGCAACCAGCCCTACGGACAGCAG
AGTTACAGCGGTTACGGCCAGTCAGCGGACACTTCAGGCTATGGCCAGAGCAGCTATGGC
AGTTCTTATGGACAGACCCAGAACACAGGCTATGGCGCACAGTCAGCTCCCCAGGGATAT
GGCTCAACTGGTGGCTATGGTAGTGGCCAGGGTTCTCAATCGTCTTACGGGCAGCAGTCT
TCATACCCTGGCTATGGCCAGCAGCCAGCTCCTAGCAGCACCTCGGGAAGTTATGGTACT
AGTTCGCAGAGCAGTGGCTATGGGCAGCCCCAGAGTGGGGGCTATGGCCAGCAATCTGGC
TATGGTGGACAGCAGCAAAGCTATGGACAGCAGCAAAGCTATAATCCCCCTCAGGGCTAT
GGACAGCAGAACCAGTACAACAGTAGCAGTGGCGGTGGTGGAGGGGGTGGCGGAGGTAGT
TATGGCCAAGATCAGCCCTCCATGAGTGGTGGTGGTGGCGGCGGTTATGGCAATCAGGAC
CAGAGCGGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCTCGAGGCGTCGGTGCTCAGCGGTGTTGGAATTCTGTTGCTTGCCGGCCTGTGCGC
GCGTGCGCGGACATGGCCTCAAACGACTATACCCAACAAGCAACCCAAAGCTACGGGGCC
TACCCCACCCAGCCTGGGCAGGGCTATTCCCAGCAGAGCAACCAGCCCTACGGACAGCAG
AGTTACAGCGGTTACGGCCAGTCAGCGGACACTTCAGGCTATGGCCAGAGCAGCTATGGC
AGTTCTTATGGACAGACCCAGAACACAGGCTATGGCGCACAGTCAGCTCCCCAGGGATAT
GGCTCAACTGGTGGCTATGGTAGTGGCCAGGGTTCTCAATCGTCTTACGGGCAGCAGTCT
TCATACCCTGGCTATGGCCAGCAGCCAGCTCCTAGCAGCACCTCGGGAAGTTATGGTACT
AGTTCGCAGAGCAGTGGCTATGGGCAGCCCCAGAGTGGGGGCTATGGCCAGCAATCTGGC
TATGGTGGACAGCAGCAAAGCTATGGACAGCAGCAAAGCTATAATCCCCCTCAGGGCTAT
GGACAGCAGAACCAGTACAACAGTAGCAGTGGCGGTGGTGGAGGGGGTGGCGGAGGTAGT
TATGGCCAAGATCAGCCCTCCATGAGTGGTGGTGGTGGCGGCGGTTATGGCAATCAGGAC
CAGAGCGGCGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q91VQ2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q91VQ2_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               109-265, gnl|bosTau2|chr25 (23032615-23032771)
               

               
               109-265, gnl|Hg17|chr16 (31101333-31101486)
               

               
               109-265, gnl|Mm7|chr7 (124066273-124066429)
               


               
               409-597, gnl|bosTau2|chr25 (23033824-23034009)
               

               
               409-597, gnl|Hg17|chr16 (31103029-31103220)
               

               
               409-597, gnl|Mm7|chr7 (124068673-124068864)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-265, gnl|bosTau2|chr25 (23032615-23032771)
               

               
               109-265, gnl|Hg17|chr16 (31101333-31101486)
               

               
               109-265, gnl|Mm7|chr7 (124066273-124066429)
               


               
               409-597, gnl|bosTau2|chr25 (23033824-23034009)
               

               
               409-597, gnl|Hg17|chr16 (31103029-31103220)
               

               
               409-597, gnl|Mm7|chr7 (124068673-124068864)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	109-265, gnl\|bosTau2\|chr25 (23032615-23032771)
	109-265, gnl\|Hg17\|chr16 (31101333-31101486)
	109-265, gnl\|Mm7\|chr7 (124066273-124066429)

	409-597, gnl\|bosTau2\|chr25 (23033824-23034009)
	409-597, gnl\|Hg17\|chr16 (31103029-31103220)
	409-597, gnl\|Mm7\|chr7 (124068673-124068864)