Ss1.1-Liv1-LVRM10138H07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAGCCAAACCAGCAGCCATAATTCTGCCTTCAAACAAGCTATTCAAGCCTCCCACAAA AAGGATTCCAGTTTTATTAGGATCCATAAAGTGATAAAAGTCTTAAACTTCACAATGAAA ACTAAAGATTTGCAGCTTTCTGACGTCTTTTTGAAAGCACTTAACCATCTGCCTCTAGAA TACAACGCTGCTTTGTACAGCCGGATATTTGATGATTTTGGGACTCACTATTTCACCTCT GGCTCCCTGGGAGGCGTGTACGACCTTCTCTATCAGTTTAGCAATGAGGAACTGAAGAAC TCAGGTTTAACACAGGAAGAAGCCAAAAACTGTATCCGGATTGAAACAAAGAAACGTTAT TTTATAGTTACAAAAACAAAGGTGGAACACCGGTGCACCACTAACAGGATGTCCGAGAAA TACGAAGGTTCCTTTTTGCAAGGATCAGAGAAATCCATATCCCTGGTTAAAGGTGGAAGA AGTGAGTATGCAGCGGCTTTGGCATGGGAGAAAGGGAGTTCTGGCCCAGGAGAGAAGACA TATTCTGAGTGGTTGGAATCAGTGAAGGAAAATCCTGCTGTGATTGACTTTGAGCTTGCT CCCATCACAGACTTGGTAAGAAACATCCCCTGTGCGGTGACAAGACGGAACAACCTCAGG AGAGCTTTCCGAGAATACGCAGCCAAATTTGACCCTTGCCAGTGTGCTCCGTGCCCCAAC AATGGCCGCCCTGTGCTCTCAGGGACCGAATGTCTATGTGTGTGCCAGAGCGGCACCTAC GGTGACAACTGTGAGAGGCGTGCCCCGGATTACAAATCTAATGCCGTAGATGGGAACTGG GGCTGCTGGTCTTCCTGGAGCACATGTGACGCTACGTACAAGAGATCAAGGACCCGAGAA TGCAACAACCCTGCCCCCCGGCAAGGAGGGAAACCCTGCGACGGGGAGAGGCGGCAGGAG GAACACTGCACATTCTCCATAATGCAGAACACTGGACAGCCATGCATCGGTGATGATGAG GACATGAAAGAAATAGACCTTCCTGAAATAGAATCAGATTCAGGGTGTCCTCAACCAGTC CCTCCAGAAAATGGATTTATTCGGAATGAAAAGACACTGTATTCAGTTGGGGAAGATGTT GAAATTGTATGCCTTACTGGATTCAAAACTGTTGGCTACCAGTACTTCAGATGCTTACCT GACAGAACCTGGAGGCGAGGAGATGTGGAATGCCAGCGGACTGACTGCCTCTTGCCAGTG GTGCCAGAAGTACTGAAACTGTCACCATTTCAGAGATTGTATAAAATTGGTGACTCCATT GAGCTAAGCTGTCCCAAAGGCTTTGTCATTGCTGGGCCATCGAGGTACACATGCAGTGGG GATTCCTGGACACCACCCATCTCAAGCTCACTCACCTGTGAACAAGATTTTCTGACACGC TTAAAGGGCCATTGTCAACCAGGACAAAAACAGTTGGGATCTGAATGTGTTTGCCTGTCT CCAGAAGAAGACTGCAGCCATCATTCAGAAGATCTCTGTGTGCTTGATACAGACTCCAAT CATTACTTTACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAGCCAAACCAGCAGCCATAATTCTGCCTTCAAACAAGCTATTCAAGCCTCCCACAAA AAGGATTCCAGTTTTATTAGGATCCATAAAGTGATAAAAGTCTTAAACTTCACAATGAAA ACTAAAGATTTGCAGCTTTCTGACGTCTTTTTGAAAGCACTTAACCATCTGCCTCTAGAA TACAACGCTGCTTTGTACAGCCGGATATTTGATGATTTTGGGACTCACTATTTCACCTCT GGCTCCCTGGGAGGCGTGTACGACCTTCTCTATCAGTTTAGCAATGAGGAACTGAAGAAC TCAGGTTTAACACAGGAAGAAGCCAAAAACTGTATCCGGATTGAAACAAAGAAACGTTAT TTTATAGTTACAAAAACAAAGGTGGAACACCGGTGCACCACTAACAGGATGTCCGAGAAA TACGAAGGTTCCTTTTTGCAAGGATCAGAGAAATCCATATCCCTGGTTAAAGGTGGAAGA AGTGAGTATGCAGCGGCTTTGGCATGGGAGAAAGGGAGTTCTGGCCCAGGAGAGAAGACA TATTCTGAGTGGTTGGAATCAGTGAAGGAAAATCCTGCTGTGATTGACTTTGAGCTTGCT CCCATCACAGACTTGGTAAGAAACATCCCCTGTGCGGTGACAAGACGGAACAACCTCAGG AGAGCTTTCCGAGAATACGCAGCCAAATTTGACCCTTGCCAGTGTGCTCCGTGCCCCAAC AATGGCCGCCCTGTGCTCTCAGGGACCGAATGTCTATGTGTGTGCCAGAGCGGCACCTAC GGTGACAACTGTGAGAGGCGTGCCCCGGATTACAAATCTAATGCCGTAGATGGGAACTGG GGCTGCTGGTCTTCCTGGAGCACATGTGACGCTACGTACAAGAGATCAAGGACCCGAGAA TGCAACAACCCTGCCCCCCGGCAAGGAGGGAAACCCTGCGACGGGGAGAGGCGGCAGGAG GAACACTGCACATTCTCCATAATGCAGAACACTGGACAGCCATGCATCGGTGATGATGAG GACATGAAAGAAATAGACCTTCCTGAAATAGAATCAGATTCAGGGTGTCCTCAACCAGTC CCTCCAGAAAATGGATTTATTCGGAATGAAAAGACACTGTATTCAGTTGGGGAAGATGTT GAAATTGTATGCCTTACTGGATTCAAAACTGTTGGCTACCAGTACTTCAGATGCTTACCT GACAGAACCTGGAGGCGAGGAGATGTGGAATGCCAGCGGACTGACTGCCTCTTGCCAGTG GTGCCAGAAGTACTGAAACTGTCACCATTTCAGAGATTGTATAAAATTGGTGACTCCATT GAGCTAAGCTGTCCCAAAGGCTTTGTCATTGCTGGGCCATCGAGGTACACATGCAGTGGG GATTCCTGGACACCACCCATCTCAAGCTCACTCACCTGTGAACAAGATTTTCTGACACGC TTAAAGGGCCATTGTCAACCAGGACAAAAACAGTTGGGATCTGAATGTGTTTGCCTGTCT CCAGAAGAAGACTGCAGCCATCATTCAGAAGATCTCTGTGTGCTTGATACAGACTCCAAT CATTACTTTACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 62-307, gnl|bosTau2|chr20 (20319018-20318773) | |
| 62-307, gnl|Hg17|chr5 (41212576-41212332) | |
| 62-307, gnl|Mm7|chr15 (4590999-4591244) | |
| 588-820, gnl|bosTau2|chr20 (20306913-20306681) | |
| 588-820, gnl|canFam2|chr4 (71497594-71497383) | |
| 588-820, gnl|danRer3|chr21 (11937023-11937230) | |
| 588-820, gnl|echTel1|scaffold_142058 (380-168) | |
| 588-820, gnl|fr1|chrUn (272034484-272034273) | |
| 588-820, gnl|galGal2|chrZ (6079835-6080046) | |
| 588-820, gnl|hg17|chr5 (41195996-41196207) | |
| 588-820, gnl|Hg17|chr5 (41196233-41196001) | |
| 588-820, gnl|loxAfr1|scaffold_1499 (82228-82439) | |
| 588-820, gnl|mm7|chr15 (4618858-4618647) | |
| 588-820, gnl|Mm7|chr15 (4618619-4618851) | |
| 588-820, gnl|monDom2|scaffold_20 (29798713-29798502) | |
| 588-820, gnl|oryCun1|scaffold_130148 (8554-8765) | |
| 588-820, gnl|panTro1|chr4 (75353741-75353530) | |
| 588-820, gnl|rheMac2|chr6 (41021408-41021619) | |
| 588-820, gnl|rn3|chr2 (53669302-53669091) | |
| 588-820, gnl|tetNig1|chrUn_random (73253794-73253583) | |
| 588-820, gnl|xenTro1|scaffold_636 (623910-624121) | |
| 821-990, gnl|bosTau2|chr20 (20305272-20305103) | |
| 821-990, gnl|canFam2|chr4 (71498646-71498475) | |
| 821-990, gnl|danRer3|chr21 (11936053-11936207) | |
| 821-990, gnl|dasNov1|scaffold_200644 (537-708) | |
| 821-990, gnl|echTel1|scaffold_176164 (8824-8995) | |
| 821-990, gnl|fr1|chrUn (272034972-272034802) | |
| 821-990, gnl|galGal2|chrZ (6077603-6077774) | |
| 821-990, gnl|hg17|chr5 (41194937-41195108) | |
| 821-990, gnl|Hg17|chr5 (41195112-41194943) | |
| 821-990, gnl|loxAfr1|scaffold_1499 (81267-81438) | |
| 821-990, gnl|mm7|chr15 (4620521-4620350) | |
| 821-990, gnl|Mm7|chr15 (4620344-4620513) | |
| 821-990, gnl|monDom2|scaffold_20 (29800259-29800088) | |
| 821-990, gnl|oryCun1|scaffold_130148 (7278-7448) | |
| 821-990, gnl|panTro1|chr4 (75354800-75354629) | |
| 821-990, gnl|rheMac2|chr6 (41020345-41020516) | |
| 821-990, gnl|rn3|chr2 (53671034-53670863) | |
| 821-990, gnl|xenTro1|scaffold_636 (622655-622826) | |
| 993-1104, gnl|bosTau2|chr20 (20304532-20304421) | |
| 993-1104, gnl|Hg17|chr5 (41194644-41194533) | |
| 993-1104, gnl|Mm7|chr15 (4620789-4620900) | |
| 1238-1426, gnl|bosTau2|chr20 (20298984-20298796) | |
| 1238-1426, gnl|canFam2|chr4 (71503752-71503579) | |
| 1238-1426, gnl|dasNov1|scaffold_26418 (3036-3202) | |
| 1238-1426, gnl|echTel1|scaffold_191419 (216-382) | |
| 1238-1426, gnl|galGal2|chrZ (6074199-6074367) | |
| 1238-1426, gnl|hg17|chr5 (41189661-41189827) | |
| 1238-1426, gnl|Hg17|chr5 (41189857-41189669) | |
| 1238-1426, gnl|mm7|chr15 (4626109-4625943) | |
| 1238-1426, gnl|Mm7|chr15 (4625911-4626099) | |
| 1238-1426, gnl|monDom2|scaffold_20 (29804335-29804171) | |
| 1238-1426, gnl|oryCun1|scaffold_130148 (4046-4212) | |
| 1238-1426, gnl|panTro1|chr4 (75360078-75359912) | |
| 1238-1426, gnl|rheMac2|chr6 (41015104-41015270) | |
| 1238-1426, gnl|rn3|chr2 (53676692-53676526) | |
| 1238-1426, gnl|xenTro1|scaffold_636 (587207-587376) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-307, gnl|bosTau2|chr20 (20319018-20318773) | |
| 62-307, gnl|Hg17|chr5 (41212576-41212332) | |
| 62-307, gnl|Mm7|chr15 (4590999-4591244) | |
| 588-820, gnl|bosTau2|chr20 (20306913-20306681) | |
| 588-820, gnl|canFam2|chr4 (71497594-71497383) | |
| 588-820, gnl|danRer3|chr21 (11937023-11937230) | |
| 588-820, gnl|echTel1|scaffold_142058 (380-168) | |
| 588-820, gnl|fr1|chrUn (272034484-272034273) | |
| 588-820, gnl|galGal2|chrZ (6079835-6080046) | |
| 588-820, gnl|hg17|chr5 (41195996-41196207) | |
| 588-820, gnl|Hg17|chr5 (41196233-41196001) | |
| 588-820, gnl|loxAfr1|scaffold_1499 (82228-82439) | |
| 588-820, gnl|mm7|chr15 (4618858-4618647) | |
| 588-820, gnl|Mm7|chr15 (4618619-4618851) | |
| 588-820, gnl|monDom2|scaffold_20 (29798713-29798502) | |
| 588-820, gnl|oryCun1|scaffold_130148 (8554-8765) | |
| 588-820, gnl|panTro1|chr4 (75353741-75353530) | |
| 588-820, gnl|rheMac2|chr6 (41021408-41021619) | |
| 588-820, gnl|rn3|chr2 (53669302-53669091) | |
| 588-820, gnl|tetNig1|chrUn_random (73253794-73253583) | |
| 588-820, gnl|xenTro1|scaffold_636 (623910-624121) | |
| 821-990, gnl|bosTau2|chr20 (20305272-20305103) | |
| 821-990, gnl|canFam2|chr4 (71498646-71498475) | |
| 821-990, gnl|danRer3|chr21 (11936053-11936207) | |
| 821-990, gnl|dasNov1|scaffold_200644 (537-708) | |
| 821-990, gnl|echTel1|scaffold_176164 (8824-8995) | |
| 821-990, gnl|fr1|chrUn (272034972-272034802) | |
| 821-990, gnl|galGal2|chrZ (6077603-6077774) | |
| 821-990, gnl|hg17|chr5 (41194937-41195108) | |
| 821-990, gnl|Hg17|chr5 (41195112-41194943) | |
| 821-990, gnl|loxAfr1|scaffold_1499 (81267-81438) | |
| 821-990, gnl|mm7|chr15 (4620521-4620350) | |
| 821-990, gnl|Mm7|chr15 (4620344-4620513) | |
| 821-990, gnl|monDom2|scaffold_20 (29800259-29800088) | |
| 821-990, gnl|oryCun1|scaffold_130148 (7278-7448) | |
| 821-990, gnl|panTro1|chr4 (75354800-75354629) | |
| 821-990, gnl|rheMac2|chr6 (41020345-41020516) | |
| 821-990, gnl|rn3|chr2 (53671034-53670863) | |
| 821-990, gnl|xenTro1|scaffold_636 (622655-622826) | |
| 993-1104, gnl|bosTau2|chr20 (20304532-20304421) | |
| 993-1104, gnl|Hg17|chr5 (41194644-41194533) | |
| 993-1104, gnl|Mm7|chr15 (4620789-4620900) | |
| 1238-1426, gnl|bosTau2|chr20 (20298984-20298796) | |
| 1238-1426, gnl|canFam2|chr4 (71503752-71503579) | |
| 1238-1426, gnl|dasNov1|scaffold_26418 (3036-3202) | |
| 1238-1426, gnl|echTel1|scaffold_191419 (216-382) | |
| 1238-1426, gnl|galGal2|chrZ (6074199-6074367) | |
| 1238-1426, gnl|hg17|chr5 (41189661-41189827) | |
| 1238-1426, gnl|Hg17|chr5 (41189857-41189669) | |
| 1238-1426, gnl|mm7|chr15 (4626109-4625943) | |
| 1238-1426, gnl|Mm7|chr15 (4625911-4626099) | |
| 1238-1426, gnl|monDom2|scaffold_20 (29804335-29804171) | |
| 1238-1426, gnl|oryCun1|scaffold_130148 (4046-4212) | |
| 1238-1426, gnl|panTro1|chr4 (75360078-75359912) | |
| 1238-1426, gnl|rheMac2|chr6 (41015104-41015270) | |
| 1238-1426, gnl|rn3|chr2 (53676692-53676526) | |
| 1238-1426, gnl|xenTro1|scaffold_636 (587207-587376) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.752445) | |
| nco (0.161734) | |
| lin (0.145603) |