Ss1.1-Liv1-LVRM10140A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCAGCCATTTTTCAGGAGCGAGAGACCTCCTCACCTCCAGAGCCATGGAAGTAATTGT GCTTTTCAGGATAATTTCATTCAGACAAGCAGTTTACTTCATGTGCCTGTTTGCTGCAGT TTCCTGTGGATGCTTGCCTCAACTACATAAAAATACCTTCTTCCGAGGTGGGGATGTATC TGCCATGTACACCCCTAGTGCCCGACACTGCCAGATGATGTGCACCTTCCATCCTAGATG TTTGCTGTTTAGTTTTCTTCCTGCAGATTCAACTAGTGTCACAGACAAAAGGTTTGGTTG CTTCTTGAAAGACAGTGTTACAGGAATGCTGCCAAGAGTGTTGCGGAAAAATGCAATTTC TGGACATTCCTTGAAGCAATGTGGCCATCAAATTAGGGCTTGCCACCGTGATATTTATAA AGGAATTGATATGAGAGGAGTCAATTTCAACGTGTCTAAGGTGAAAAGCGTTGAAGAATG CCAGAAAAGGTGCACCAACAGCATCCACTGCCTTTTTTTCACATATGCCACGCAAGCATT CAACAATGCAGAGTACCGGAACAACTGCCTATTAAAGCACAGTCCAGGAGGAACACCTAC TAGTATAAAGGTGCTGGCTAACGTGGAATCTGGATTTTCACTGAAGCCCTGTGCAGACTC GGAAATTGGCTGCCACATGGACATTTTCCAGCATCTCGCATTTTCAGACGTGGATGTTGC CAGAGTTATTGCACCAGATGCTTTTGTATGTCGCACCATTTGCACCTACCACCCCAACTG CCTTTTCTTCACCTTTTATACTAATGCCTGGAAGATAGAGTCACAAAGAAATGTTTGTTT CCTTAAGACGTCCCACAGTGGGACACCGAGCTCCCCCACTCCTCAGGAAAACGCCATTTC TGGATACAGCCTCTTAACCTGCAAACAAACTTTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCAGCCATTTTTCAGGAGCGAGAGACCTCCTCACCTCCAGAGCCATGGAAGTAATTGT GCTTTTCAGGATAATTTCATTCAGACAAGCAGTTTACTTCATGTGCCTGTTTGCTGCAGT TTCCTGTGGATGCTTGCCTCAACTACATAAAAATACCTTCTTCCGAGGTGGGGATGTATC TGCCATGTACACCCCTAGTGCCCGACACTGCCAGATGATGTGCACCTTCCATCCTAGATG TTTGCTGTTTAGTTTTCTTCCTGCAGATTCAACTAGTGTCACAGACAAAAGGTTTGGTTG CTTCTTGAAAGACAGTGTTACAGGAATGCTGCCAAGAGTGTTGCGGAAAAATGCAATTTC TGGACATTCCTTGAAGCAATGTGGCCATCAAATTAGGGCTTGCCACCGTGATATTTATAA AGGAATTGATATGAGAGGAGTCAATTTCAACGTGTCTAAGGTGAAAAGCGTTGAAGAATG CCAGAAAAGGTGCACCAACAGCATCCACTGCCTTTTTTTCACATATGCCACGCAAGCATT CAACAATGCAGAGTACCGGAACAACTGCCTATTAAAGCACAGTCCAGGAGGAACACCTAC TAGTATAAAGGTGCTGGCTAACGTGGAATCTGGATTTTCACTGAAGCCCTGTGCAGACTC GGAAATTGGCTGCCACATGGACATTTTCCAGCATCTCGCATTTTCAGACGTGGATGTTGC CAGAGTTATTGCACCAGATGCTTTTGTATGTCGCACCATTTGCACCTACCACCCCAACTG CCTTTTCTTCACCTTTTATACTAATGCCTGGAAGATAGAGTCACAAAGAAATGTTTGTTT CCTTAAGACGTCCCACAGTGGGACACCGAGCTCCCCCACTCCTCAGGAAAACGCCATTTC TGGATACAGCCTCTTAACCTGCAAACAAACTTTGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 128-293, gnl|bosTau2|chr27 (5555942-5555777) | |
| 128-293, gnl|canFam2|chr16 (47472688-47472538) | |
| 128-293, gnl|dasNov1|scaffold_154550 (4454-4309) | |
| 128-293, gnl|echTel1|scaffold_322146 (95506-95661) | |
| 128-293, gnl|galGal2|chr4 (61885434-61885579) | |
| 128-293, gnl|hg17|chr4 (187528394-187528536) | |
| 128-293, gnl|Hg17|chr4 (187528429-187528594) | |
| 128-293, gnl|loxAfr1|scaffold_165 (156373-156207) | |
| 128-293, gnl|mm7|chr8 (44074772-44074633) | |
| 128-293, gnl|Mm7|chr8 (44074738-44074573) | |
| 128-293, gnl|monDom2|scaffold_9 (68797245-68797393) | |
| 128-293, gnl|oryCun1|scaffold_183744 (20546-20691) | |
| 128-293, gnl|panTro1|chr3 (205749493-205749635) | |
| 128-293, gnl|rheMac2|chr5 (178353407-178353549) | |
| 128-293, gnl|rn3|chr16 (50255450-50255588) | |
| 398-559, gnl|bosTau2|chr27 (5553138-5552977) | |
| 398-559, gnl|Hg17|chr4 (187533083-187533244) | |
| 398-559, gnl|Mm7|chr8 (44068926-44068765) | |
| 668-828, gnl|bosTau2|chr27 (5545867-5545707) | |
| 668-828, gnl|canFam2|chr16 (47464106-47463935) | |
| 668-828, gnl|canFam2|chr34 (23740322-23740495) | |
| 668-828, gnl|dasNov1|scaffold_70441 (3853-4036) | |
| 668-828, gnl|echTel1|scaffold_301647 (13736-13551) | |
| 668-828, gnl|echTel1|scaffold_319772 (145501-145676) | |
| 668-828, gnl|galGal2|chr4 (61891248-61891432) | |
| 668-828, gnl|hg17|chr3 (189631047-189631224) | |
| 668-828, gnl|hg17|chr4 (187546526-187546725) | |
| 668-828, gnl|Hg17|chr4 (187546545-187546705) | |
| 668-828, gnl|loxAfr1|scaffold_7470 (62145-62306) | |
| 668-828, gnl|loxAfr1|scaffold_7470 (62305-62159) | |
| 668-828, gnl|mm7|chr16 (24281755-24281888) | |
| 668-828, gnl|mm7|chr8 (44063702-44063518) | |
| 668-828, gnl|Mm7|chr8 (44063683-44063523) | |
| 668-828, gnl|monDom2|scaffold_9 (68850386-68850582) | |
| 668-828, gnl|oryCun1|scaffold_145809 (16627-16447) | |
| 668-828, gnl|oryCun1|scaffold_199023 (360091-360268) | |
| 668-828, gnl|panTro1|chr2_random (26801197-26801374) | |
| 668-828, gnl|panTro1|chr3 (205766386-205766570) | |
| 668-828, gnl|rheMac2|chr2 (180761400-180761577) | |
| 668-828, gnl|rheMac2|chr5 (178368304-178368497) | |
| 668-828, gnl|rn3|chr11 (78366473-78366349) | |
| 668-828, gnl|rn3|chr16 (50262746-50262930) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 128-293, gnl|bosTau2|chr27 (5555942-5555777) | |
| 128-293, gnl|canFam2|chr16 (47472688-47472538) | |
| 128-293, gnl|dasNov1|scaffold_154550 (4454-4309) | |
| 128-293, gnl|echTel1|scaffold_322146 (95506-95661) | |
| 128-293, gnl|galGal2|chr4 (61885434-61885579) | |
| 128-293, gnl|hg17|chr4 (187528394-187528536) | |
| 128-293, gnl|Hg17|chr4 (187528429-187528594) | |
| 128-293, gnl|loxAfr1|scaffold_165 (156373-156207) | |
| 128-293, gnl|mm7|chr8 (44074772-44074633) | |
| 128-293, gnl|Mm7|chr8 (44074738-44074573) | |
| 128-293, gnl|monDom2|scaffold_9 (68797245-68797393) | |
| 128-293, gnl|oryCun1|scaffold_183744 (20546-20691) | |
| 128-293, gnl|panTro1|chr3 (205749493-205749635) | |
| 128-293, gnl|rheMac2|chr5 (178353407-178353549) | |
| 128-293, gnl|rn3|chr16 (50255450-50255588) | |
| 398-559, gnl|bosTau2|chr27 (5553138-5552977) | |
| 398-559, gnl|Hg17|chr4 (187533083-187533244) | |
| 398-559, gnl|Mm7|chr8 (44068926-44068765) | |
| 668-828, gnl|bosTau2|chr27 (5545867-5545707) | |
| 668-828, gnl|canFam2|chr16 (47464106-47463935) | |
| 668-828, gnl|canFam2|chr34 (23740322-23740495) | |
| 668-828, gnl|dasNov1|scaffold_70441 (3853-4036) | |
| 668-828, gnl|echTel1|scaffold_301647 (13736-13551) | |
| 668-828, gnl|echTel1|scaffold_319772 (145501-145676) | |
| 668-828, gnl|galGal2|chr4 (61891248-61891432) | |
| 668-828, gnl|hg17|chr3 (189631047-189631224) | |
| 668-828, gnl|hg17|chr4 (187546526-187546725) | |
| 668-828, gnl|Hg17|chr4 (187546545-187546705) | |
| 668-828, gnl|loxAfr1|scaffold_7470 (62145-62306) | |
| 668-828, gnl|loxAfr1|scaffold_7470 (62305-62159) | |
| 668-828, gnl|mm7|chr16 (24281755-24281888) | |
| 668-828, gnl|mm7|chr8 (44063702-44063518) | |
| 668-828, gnl|Mm7|chr8 (44063683-44063523) | |
| 668-828, gnl|monDom2|scaffold_9 (68850386-68850582) | |
| 668-828, gnl|oryCun1|scaffold_145809 (16627-16447) | |
| 668-828, gnl|oryCun1|scaffold_199023 (360091-360268) | |
| 668-828, gnl|panTro1|chr2_random (26801197-26801374) | |
| 668-828, gnl|panTro1|chr3 (205766386-205766570) | |
| 668-828, gnl|rheMac2|chr2 (180761400-180761577) | |
| 668-828, gnl|rheMac2|chr5 (178368304-178368497) | |
| 668-828, gnl|rn3|chr11 (78366473-78366349) | |
| 668-828, gnl|rn3|chr16 (50262746-50262930) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.300978) |