Ss1.1-Liv1-LVRM10141C09.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTCTGCCCACTCCTGATAAAGCGCACC AGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGGGGCACAGCCTGCCTCTGACACCTG CGCGACTTTCGTCTCTGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAA ATGTGGGAAGTGTGGACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGACCCAGGGA GGAGATTGTCTACCTGCCCTGCATTTACCGAAACACAAGCACCGAGGCCCCGGATTATCT GGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTATTGCCAGGTCATCCACCGGCTGCC CATGCCCAACATGAAGGACGAGCTGCATCACTCAGGATGGAACACCTGCAGCAGCTGCTT CGGAGACAGCACCAAGTCACGCACCAAGCTGATGCTGCCCTGCCTCATCTCCTCCCGAAT TTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCCAAAGCTGCACAAGGTCATCGAGCC CCAGGACATCCATGCCAAGTGTGACCTGGGCTACCTACACACCAGCCACTGCCTGGCCAG TGGGGAGGTGATGATCAGTGCCCTGGGAGATCCCAAGGGCAATGGCAAAGGGGGGTTTGT GCTGCTGGATGGAGAGACCTTTGAGGTGAAGGGGACATGGGAGAGGCCTGGAGGTGCTGC TCCCTTGGGCTATGACTTCTGGTACCAGCCTCGACACAATGTCATGATCAGCACCGAATG GGCGGCTCCCAATGTCTTACGAGATGGCTTCAACCCCGCTGACGTACAGGCAGGGCTGTA TGGGAGCTGCTTACACGTGTGGGACTGGCAGCGCCACGAGATGGTGCAGACCCTGCATCT GCAGGATGGGCTCATCCCCCTGGAGATCCGATTCCTGCACAACCCGGCCGCTTCCCAGGG CTTCGTAGGCTGTGCCCTGGGCTCCAACATCCAGCGCTTCTACAAGAATGAGGGAGGTAC TTGGTCGGTAGAGAAGGTGATCCAGGTGCCCCCCAAGAAAGTGAAGGGCTGGATGCTGCC TGAAATGCCAAGCCTCATCACTGACATCCTGCTGTCCCTGGACGACCGCTTCCTCTACTT CAGCAACTGGCTGCACGGGGATCTGCGACAGTATGACATCTCCGACCCAAAGAGGCCCCG CCTCACAGGACAGCTCTTCCTCGGGGGCAGCATTGTTAAGGGTGGCCCCGTGCAAGTGTT GGAGGACCAGGAGCTAAAATCCCAGCCAGAGCCCCTGGTGGTCAAGGGGAAACGAGTAGC CGGAGGCCCTCAGATGATCCAGCTCAGCCTGGATGGCAAGCGTCTCTATGTTACCACGTC GCTGTACAGTGCCTGGGACAAGCAGTTTTACCCCGATCTCATCAGGGAAGGCTCTGTGAT GCTGCAGATCGATGTAGACACAGAGAAGGGAGGGCTGAAGTTGAACCCCAACTTCCTGGT GGACTTTGGGAAGGAGCCCCTTGGCCCAGCTCTGGCCCATGAGCTTCGCTACCCTGGGGG CGACTGCAGCTCTGACATCTGGCTCTGAAGGCCACCCCTCCTAGCCCCCCTCCATGTTCT GAGCCATCCTTTCCGCAGGGACCTGGCCTCACTCTGCTCTCTTGCCCCACCCCTACTCCC GACCCTTGACAGCTTATCCTACTAAAGCCAGACTCAGGCTCTTGACATTCTTGAGCTGTG TCTCCATTTACCCGCCACTGTTTTGAGCTGCTCCCTGTGCTGTTTTTACATGAGTTCTTG GAAATTATTTCACCAAGAAATAAACCGGTGAACCTCAAAAAAAAAAAACTTGCCTTTGGG GGCACTGGGCCTGTGACTCCTCTTCTGCTGACCCTTTGTATCTGGCACAGGAAAGTCCTG AAGAGGACCCGAGGGGTGAGGTGGTTATGACGACTAGTTCATGCCAGTGATTACAACATG CTGCTAACAATGTCAAAACCTCACTTTTATGGCCAGACAGAACCTGAAAATTTTGGAGGT GGGGAAAGCTGGTGGGGAGAGACTGTCAGTTGACATTGCTAAATTTTATTACTTTTAAAA TTTGCGCTTTCTTTTAATAAACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGCCTGCCTCTGACACCTGCGCGACTTTCGTCTCTGCCCACTCCTGATAAAGCGCACC AGCGAGCAGCATGGCTACCAAATGTGGGAAGTGTGGGGCACAGCCTGCCTCTGACACCTG CGCGACTTTCGTCTCTGCCCACTCCTGATAAAGCGCACCAGCGAGCAGCATGGCTACCAA ATGTGGGAAGTGTGGACCTGGCTACCCTACCCCCCTGGAGGCCATGAAAGGACCCAGGGA GGAGATTGTCTACCTGCCCTGCATTTACCGAAACACAAGCACCGAGGCCCCGGATTATCT GGCCACTGTGGATGTTGACCCTAAGTCTCCCCAGTATTGCCAGGTCATCCACCGGCTGCC CATGCCCAACATGAAGGACGAGCTGCATCACTCAGGATGGAACACCTGCAGCAGCTGCTT CGGAGACAGCACCAAGTCACGCACCAAGCTGATGCTGCCCTGCCTCATCTCCTCCCGAAT TTATGTGGTGGACGTGGGCACCGAACCCCGTGCCCCAAAGCTGCACAAGGTCATCGAGCC CCAGGACATCCATGCCAAGTGTGACCTGGGCTACCTACACACCAGCCACTGCCTGGCCAG TGGGGAGGTGATGATCAGTGCCCTGGGAGATCCCAAGGGCAATGGCAAAGGGGGGTTTGT GCTGCTGGATGGAGAGACCTTTGAGGTGAAGGGGACATGGGAGAGGCCTGGAGGTGCTGC TCCCTTGGGCTATGACTTCTGGTACCAGCCTCGACACAATGTCATGATCAGCACCGAATG GGCGGCTCCCAATGTCTTACGAGATGGCTTCAACCCCGCTGACGTACAGGCAGGGCTGTA TGGGAGCTGCTTACACGTGTGGGACTGGCAGCGCCACGAGATGGTGCAGACCCTGCATCT GCAGGATGGGCTCATCCCCCTGGAGATCCGATTCCTGCACAACCCGGCCGCTTCCCAGGG CTTCGTAGGCTGTGCCCTGGGCTCCAACATCCAGCGCTTCTACAAGAATGAGGGAGGTAC TTGGTCGGTAGAGAAGGTGATCCAGGTGCCCCCCAAGAAAGTGAAGGGCTGGATGCTGCC TGAAATGCCAAGCCTCATCACTGACATCCTGCTGTCCCTGGACGACCGCTTCCTCTACTT CAGCAACTGGCTGCACGGGGATCTGCGACAGTATGACATCTCCGACCCAAAGAGGCCCCG CCTCACAGGACAGCTCTTCCTCGGGGGCAGCATTGTTAAGGGTGGCCCCGTGCAAGTGTT GGAGGACCAGGAGCTAAAATCCCAGCCAGAGCCCCTGGTGGTCAAGGGGAAACGAGTAGC CGGAGGCCCTCAGATGATCCAGCTCAGCCTGGATGGCAAGCGTCTCTATGTTACCACGTC GCTGTACAGTGCCTGGGACAAGCAGTTTTACCCCGATCTCATCAGGGAAGGCTCTGTGAT GCTGCAGATCGATGTAGACACAGAGAAGGGAGGGCTGAAGTTGAACCCCAACTTCCTGGT GGACTTTGGGAAGGAGCCCCTTGGCCCAGCTCTGGCCCATGAGCTTCGCTACCCTGGGGG CGACTGCAGCTCTGACATCTGGCTCTGAAGGCCACCCCTCCTAGCCCCCCTCCATGTTCT GAGCCATCCTTTCCGCAGGGACCTGGCCTCACTCTGCTCTCTTGCCCCACCCCTACTCCC GACCCTTGACAGCTTATCCTACTAAAGCCAGACTCAGGCTCTTGACATTCTTGAGCTGTG TCTCCATTTACCCGCCACTGTTTTGAGCTGCTCCCTGTGCTGTTTTTACATGAGTTCTTG GAAATTATTTCACCAAGAAATAAACCGGTGAACCTCAAAAAAAAAAAACTTGCCTTTGGG GGCACTGGGCCTGTGACTCCTCTTCTGCTGACCCTTTGTATCTGGCACAGGAAAGTCCTG AAGAGGACCCGAGGGGTGAGGTGGTTATGACGACTAGTTCATGCCAGTGATTACAACATG CTGCTAACAATGTCAAAACCTCACTTTTATGGCCAGACAGAACCTGAAAATTTTGGAGGT GGGGAAAGCTGGTGGGGAGAGACTGTCAGTTGACATTGCTAAATTTTATTACTTTTAAAA TTTGCGCTTTCTTTTAATAAACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 688-1630, + strand, RNAz p=0.871337 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 688-1630, + strand, RNAz p=0.871337 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 338-530, gnl|bosTau2|chr3 (16195902-16196094) | |
| 338-530, gnl|canFam2|chr17 (63493855-63494061) | |
| 338-530, gnl|danRer3|chr16 (34642903-34642688) | |
| 338-530, gnl|echTel1|scaffold_316629 (6844-6625) | |
| 338-530, gnl|fr1|chrUn (152573306-152573086) | |
| 338-530, gnl|galGal2|chrUn (97044781-97044974) | |
| 338-530, gnl|hg17|chr1 (148154523-148154741) | |
| 338-530, gnl|Hg17|chr1 (148154744-148154552) | |
| 338-530, gnl|loxAfr1|scaffold_18577 (35852-35634) | |
| 338-530, gnl|mm7|chr3 (94811362-94811156) | |
| 338-530, gnl|Mm7|chr3 (94811151-94811343) | |
| 338-530, gnl|monDom2|scaffold_44 (4547830-4548052) | |
| 338-530, gnl|oryCun1|scaffold_186326 (5883-6090) | |
| 338-530, gnl|panTro1|chr1 (129904481-129904699) | |
| 338-530, gnl|rheMac2|chr1 (129801466-129801684) | |
| 338-530, gnl|rn3|chr2 (189790006-189789800) | |
| 338-530, gnl|tetNig1|chrUn_random (46927038-46927249) | |
| 338-530, gnl|xenTro1|scaffold_918 (53970-54179) | |
| 649-834, gnl|bosTau2|chr3 (16198368-16198553) | |
| 649-834, gnl|canFam2|chr17 (63491896-63492091) | |
| 649-834, gnl|danRer3|chr16 (34648011-34647823) | |
| 649-834, gnl|dasNov1|scaffold_61274 (435-240) | |
| 649-834, gnl|echTel1|scaffold_316629 (9240-9045) | |
| 649-834, gnl|fr1|chrUn (152573888-152573693) | |
| 649-834, gnl|galGal2|chrUn (97042876-97043069) | |
| 649-834, gnl|hg17|chr1 (148152267-148152462) | |
| 649-834, gnl|Hg17|chr1 (148152455-148152270) | |
| 649-834, gnl|loxAfr1|scaffold_18577 (39157-38962) | |
| 649-834, gnl|mm7|chr3 (94813783-94813588) | |
| 649-834, gnl|Mm7|chr3 (94813593-94813778) | |
| 649-834, gnl|monDom2|scaffold_44 (4545737-4545932) | |
| 649-834, gnl|oryCun1|scaffold_186326 (3644-3839) | |
| 649-834, gnl|panTro1|chr1 (129902218-129902413) | |
| 649-834, gnl|rheMac2|chr1 (129799249-129799444) | |
| 649-834, gnl|rn3|chr2 (189792062-189791867) | |
| 649-834, gnl|tetNig1|chrUn_random (46926418-46926611) | |
| 649-834, gnl|xenTro1|scaffold_918 (52957-53155) | |
| 1079-1213, gnl|bosTau2|chr3 (16199877-16200011) | |
| 1079-1213, gnl|canFam2|chr17 (63490425-63490571) | |
| 1079-1213, gnl|danRer3|chr16 (34652192-34652046) | |
| 1079-1213, gnl|echTel1|scaffold_316629 (10439-10291) | |
| 1079-1213, gnl|fr1|chrUn (152575188-152575054) | |
| 1079-1213, gnl|galGal2|chrUn (97015396-97015535) | |
| 1079-1213, gnl|hg17|chr1 (148151110-148151257) | |
| 1079-1213, gnl|Hg17|chr1 (148151246-148151112) | |
| 1079-1213, gnl|loxAfr1|scaffold_18577 (40390-40245) | |
| 1079-1213, gnl|mm7|chr3 (94816699-94816560) | |
| 1079-1213, gnl|Mm7|chr3 (94816570-94816695) | |
| 1079-1213, gnl|monDom2|scaffold_44 (4544016-4544169) | |
| 1079-1213, gnl|oryCun1|scaffold_186326 (1601-1746) | |
| 1079-1213, gnl|panTro1|chr1 (129901061-129901208) | |
| 1079-1213, gnl|rheMac2|chr1 (129798096-129798242) | |
| 1079-1213, gnl|rn3|chr2 (189794828-189794687) | |
| 1079-1213, gnl|tetNig1|chrUn_random (46925455-46925575) | |
| 1079-1213, gnl|xenTro1|scaffold_918 (52072-52214) | |
| 1412-2103, gnl|bosTau2|chr3 (16200823-16201529) | |
| 1412-2103, gnl|Hg17|chr1 (148150269-148149598) | |
| 1412-2103, gnl|Mm7|chr3 (94818340-94818937) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 338-530, gnl|bosTau2|chr3 (16195902-16196094) | |
| 338-530, gnl|canFam2|chr17 (63493855-63494061) | |
| 338-530, gnl|danRer3|chr16 (34642903-34642688) | |
| 338-530, gnl|echTel1|scaffold_316629 (6844-6625) | |
| 338-530, gnl|fr1|chrUn (152573306-152573086) | |
| 338-530, gnl|galGal2|chrUn (97044781-97044974) | |
| 338-530, gnl|hg17|chr1 (148154523-148154741) | |
| 338-530, gnl|Hg17|chr1 (148154744-148154552) | |
| 338-530, gnl|loxAfr1|scaffold_18577 (35852-35634) | |
| 338-530, gnl|mm7|chr3 (94811362-94811156) | |
| 338-530, gnl|Mm7|chr3 (94811151-94811343) | |
| 338-530, gnl|monDom2|scaffold_44 (4547830-4548052) | |
| 338-530, gnl|oryCun1|scaffold_186326 (5883-6090) | |
| 338-530, gnl|panTro1|chr1 (129904481-129904699) | |
| 338-530, gnl|rheMac2|chr1 (129801466-129801684) | |
| 338-530, gnl|rn3|chr2 (189790006-189789800) | |
| 338-530, gnl|tetNig1|chrUn_random (46927038-46927249) | |
| 338-530, gnl|xenTro1|scaffold_918 (53970-54179) | |
| 649-834, gnl|bosTau2|chr3 (16198368-16198553) | |
| 649-834, gnl|canFam2|chr17 (63491896-63492091) | |
| 649-834, gnl|danRer3|chr16 (34648011-34647823) | |
| 649-834, gnl|dasNov1|scaffold_61274 (435-240) | |
| 649-834, gnl|echTel1|scaffold_316629 (9240-9045) | |
| 649-834, gnl|fr1|chrUn (152573888-152573693) | |
| 649-834, gnl|galGal2|chrUn (97042876-97043069) | |
| 649-834, gnl|hg17|chr1 (148152267-148152462) | |
| 649-834, gnl|Hg17|chr1 (148152455-148152270) | |
| 649-834, gnl|loxAfr1|scaffold_18577 (39157-38962) | |
| 649-834, gnl|mm7|chr3 (94813783-94813588) | |
| 649-834, gnl|Mm7|chr3 (94813593-94813778) | |
| 649-834, gnl|monDom2|scaffold_44 (4545737-4545932) | |
| 649-834, gnl|oryCun1|scaffold_186326 (3644-3839) | |
| 649-834, gnl|panTro1|chr1 (129902218-129902413) | |
| 649-834, gnl|rheMac2|chr1 (129799249-129799444) | |
| 649-834, gnl|rn3|chr2 (189792062-189791867) | |
| 649-834, gnl|tetNig1|chrUn_random (46926418-46926611) | |
| 649-834, gnl|xenTro1|scaffold_918 (52957-53155) | |
| 1079-1213, gnl|bosTau2|chr3 (16199877-16200011) | |
| 1079-1213, gnl|canFam2|chr17 (63490425-63490571) | |
| 1079-1213, gnl|danRer3|chr16 (34652192-34652046) | |
| 1079-1213, gnl|echTel1|scaffold_316629 (10439-10291) | |
| 1079-1213, gnl|fr1|chrUn (152575188-152575054) | |
| 1079-1213, gnl|galGal2|chrUn (97015396-97015535) | |
| 1079-1213, gnl|hg17|chr1 (148151110-148151257) | |
| 1079-1213, gnl|Hg17|chr1 (148151246-148151112) | |
| 1079-1213, gnl|loxAfr1|scaffold_18577 (40390-40245) | |
| 1079-1213, gnl|mm7|chr3 (94816699-94816560) | |
| 1079-1213, gnl|Mm7|chr3 (94816570-94816695) | |
| 1079-1213, gnl|monDom2|scaffold_44 (4544016-4544169) | |
| 1079-1213, gnl|oryCun1|scaffold_186326 (1601-1746) | |
| 1079-1213, gnl|panTro1|chr1 (129901061-129901208) | |
| 1079-1213, gnl|rheMac2|chr1 (129798096-129798242) | |
| 1079-1213, gnl|rn3|chr2 (189794828-189794687) | |
| 1079-1213, gnl|tetNig1|chrUn_random (46925455-46925575) | |
| 1079-1213, gnl|xenTro1|scaffold_918 (52072-52214) | |
| 1412-2103, gnl|bosTau2|chr3 (16200823-16201529) | |
| 1412-2103, gnl|Hg17|chr1 (148150269-148149598) | |
| 1412-2103, gnl|Mm7|chr3 (94818340-94818937) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cov (8.98639) | |
| cli (1.37531) | |
| nep (0.551775) | |
| cag (0.453583) | |
| fcc (0.39557) | |
| col (0.390016) | |
| cki (0.330469) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| jca (0.22792) | |
| cty (0.20816) | |
| duo (0.172801) | |
| csp (0.161186) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (8.98639) | |
| cli (1.37531) | |
| nep (0.551775) | |
| cag (0.453583) | |
| fcc (0.39557) | |
| col (0.390016) | |
| cki (0.330469) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| jca (0.22792) | |
| cty (0.20816) | |
| duo (0.172801) | |
| csp (0.161186) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) |