Ss1.1-Liv1-LVRM10142C08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGCCGGAAGTACTCAGATCCAGGCGCAGCGACGCAGGGGCTAGTACGCGGGTCCGGCC AGACTATGCCGGTCACCGGGAAGACTTTCCGGCGGCGCCGGGCTGACTCGGAGTCCGAAG AAGATGAGCAGGACTCAGAGGAGGTTCGATTAAAACTGGAGGAGACTCGAGAGGTACAGA ACTTGAGAAAGAGGCCCAACGGGGTGAGTGCTGTAGCCCTGCTGGTGGGAGAGAAGGTAC AAGAAGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGGATGGTGGACA TGAAGAAACTAAAAGAAAGAGGCAAAGATAAGATCAGCGAAGAGGAGGATCTCCATCTGG GGACGTCGTTTTCCGCTGAAACCAACCGAAGGGATGAGGACGCCGACATGATGAAGTACA TCGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACACGAGGAACAGAAAGTCAAGC CGAAGAACGCGGAGGACTGCCTTTACGAGCTGCCGGAGAACATCCGGGTCTCCTCAGCGA AGAGGACGGAGGAGATGCTGTCCAACCAGATGCTGAGCGGCATCCCCGAGGTGGACCTCG GCATCGACGCTAAAATCAAAAATATCATTTCCACGGAGGATGCCAAGGCCCGCCTGCTGG CAGAGCAACAGAACAAGAAGAAGGACAGCGAGACATCCTTCGTGCCCACCAACATGGCAG TGAATTATGTGCAGCACAACCGATTTTACCACGAGGAGCTCAATGCTCCCATACGGAGAA ACAAAGAAGAGCCCAAAGCCCGACCCTTGAGAGTGGGCGACACAGAGAAGCCAGAGCCCG AGCGGTCCCCTCCCAACCGCAAGCGTCCTGCTAATGAGAAGGCCACCGATGACTATCACT ACGAGAAGTTCAAGAAGATGAACCGGCGGTACTGAGGGAGGCAGAAGGGGAGCAGTGCAC AGCGGGGTGTTAAATAGTGTCCTCCACTCCCTCTATCCCCATGATAACAGGCTGCCTGGA CAGAAGCCTGTGCACTGATAGCAGACGGTTCCCAAAACAGATGCTGCTAACCCTGCGCCT CACATGCTGGATTTTTCAGGCACCGTGTGTGTAACCTTTTGAAACAAGACAATGCGTAGT TTTTCTATTTGGGGGAAAACTCTCTTCTTGTGAGCATTATTAAATCTTGTTTGTAAATAT GTTGACTTCCTCCTAATATTTGCCCTGGGTCAGGAGGAAACAGCTGTGAGTTTAGAGTGA GATGATACCCTTTAGATTGTGCTTTCATTACATATGCAATCATGTCTCCTACTTGTAAAT ATCAGGAACGGGGTTCAGAAATGCATCCGTCCCTCTTTACGGTGGAGCCAGCTGATGGCA GAAAAATCTAGGATGAGATCAAAGGGTCACTGGTATTTTCTGACTTGTACAGTTGTGTTT CTTTTCATTAAGAGAGAAAAAACAATTTCTATCGCTTTAAGCACTTAAGTATTAAATATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGCCGGAAGTACTCAGATCCAGGCGCAGCGACGCAGGGGCTAGTACGCGGGTCCGGCC AGACTATGCCGGTCACCGGGAAGACTTTCCGGCGGCGCCGGGCTGACTCGGAGTCCGAAG AAGATGAGCAGGACTCAGAGGAGGTTCGATTAAAACTGGAGGAGACTCGAGAGGTACAGA ACTTGAGAAAGAGGCCCAACGGGGTGAGTGCTGTAGCCCTGCTGGTGGGAGAGAAGGTAC AAGAAGAGACCACTCTAGTGGATGATCCCTTTCAGATGAAGACAGGTGGGATGGTGGACA TGAAGAAACTAAAAGAAAGAGGCAAAGATAAGATCAGCGAAGAGGAGGATCTCCATCTGG GGACGTCGTTTTCCGCTGAAACCAACCGAAGGGATGAGGACGCCGACATGATGAAGTACA TCGAGACAGAGCTAAAGAAGAGGAAAGGGATCGTGGAACACGAGGAACAGAAAGTCAAGC CGAAGAACGCGGAGGACTGCCTTTACGAGCTGCCGGAGAACATCCGGGTCTCCTCAGCGA AGAGGACGGAGGAGATGCTGTCCAACCAGATGCTGAGCGGCATCCCCGAGGTGGACCTCG GCATCGACGCTAAAATCAAAAATATCATTTCCACGGAGGATGCCAAGGCCCGCCTGCTGG CAGAGCAACAGAACAAGAAGAAGGACAGCGAGACATCCTTCGTGCCCACCAACATGGCAG TGAATTATGTGCAGCACAACCGATTTTACCACGAGGAGCTCAATGCTCCCATACGGAGAA ACAAAGAAGAGCCCAAAGCCCGACCCTTGAGAGTGGGCGACACAGAGAAGCCAGAGCCCG AGCGGTCCCCTCCCAACCGCAAGCGTCCTGCTAATGAGAAGGCCACCGATGACTATCACT ACGAGAAGTTCAAGAAGATGAACCGGCGGTACTGAGGGAGGCAGAAGGGGAGCAGTGCAC AGCGGGGTGTTAAATAGTGTCCTCCACTCCCTCTATCCCCATGATAACAGGCTGCCTGGA CAGAAGCCTGTGCACTGATAGCAGACGGTTCCCAAAACAGATGCTGCTAACCCTGCGCCT CACATGCTGGATTTTTCAGGCACCGTGTGTGTAACCTTTTGAAACAAGACAATGCGTAGT TTTTCTATTTGGGGGAAAACTCTCTTCTTGTGAGCATTATTAAATCTTGTTTGTAAATAT GTTGACTTCCTCCTAATATTTGCCCTGGGTCAGGAGGAAACAGCTGTGAGTTTAGAGTGA GATGATACCCTTTAGATTGTGCTTTCATTACATATGCAATCATGTCTCCTACTTGTAAAT ATCAGGAACGGGGTTCAGAAATGCATCCGTCCCTCTTTACGGTGGAGCCAGCTGATGGCA GAAAAATCTAGGATGAGATCAAAGGGTCACTGGTATTTTCTGACTTGTACAGTTGTGTTT CTTTTCATTAAGAGAGAAAAAACAATTTCTATCGCTTTAAGCACTTAAGTATTAAATATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 487-606, - strand, RNAz p=0.530728 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 487-606, - strand, RNAz p=0.530728 |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 2-148, gnl|bosTau2|chr11 (80406256-80406115) | |
| 2-148, gnl|canFam2|chr9 (57354384-57354259) | |
| 2-148, gnl|dasNov1|scaffold_17536 (4284-4392) | |
| 2-148, gnl|echTel1|scaffold_130969 (867-992) | |
| 2-148, gnl|galGal2|chr17 (5164786-5164649) | |
| 2-148, gnl|hg17|chr9 (129676967-129677092) | |
| 2-148, gnl|Hg17|chr9 (129677119-129676972) | |
| 2-148, gnl|loxAfr1|scaffold_3801 (27492-27617) | |
| 2-148, gnl|mm7|chr2 (30989084-30989203) | |
| 2-148, gnl|Mm7|chr2 (30989238-30989089) | |
| 2-148, gnl|monDom2|scaffold_51 (4868998-4869139) | |
| 2-148, gnl|panTro1|chr11 (114541918-114542043) | |
| 2-148, gnl|rheMac2|chr15 (9006825-9006700) | |
| 2-148, gnl|rn3|chr3 (9943216-9943335) | |
| 407-607, gnl|bosTau2|chr11 (80401907-80401707) | |
| 407-607, gnl|Hg17|chr9 (129672904-129672704) | |
| 407-607, gnl|Mm7|chr2 (30983402-30983202) | |
| 609-744, gnl|bosTau2|chr11 (80400705-80400570) | |
| 609-744, gnl|canFam2|chr8 (62342214-62342076) | |
| 609-744, gnl|canFam2|chr8 (62342077-62342215) | |
| 609-744, gnl|canFam2|chr9 (57358759-57358568) | |
| 609-744, gnl|danRer3|chr5 (29076143-29076367) | |
| 609-744, gnl|danRer3|chr5 (29076279-29076146) | |
| 609-744, gnl|danRer3|chr5 (29076136-29076294) | |
| 609-744, gnl|dasNov1|scaffold_17536 (3689-3827) | |
| 609-744, gnl|dasNov1|scaffold_17536 (3826-3688) | |
| 609-744, gnl|dasNov1|scaffold_37826 (16392-16200) | |
| 609-744, gnl|echTel1|scaffold_277136 (36885-36752) | |
| 609-744, gnl|echTel1|scaffold_277136 (36753-36885) | |
| 609-744, gnl|echTel1|scaffold_50589 (1844-2038) | |
| 609-744, gnl|fr1|chrUn (257754153-257753999) | |
| 609-744, gnl|fr1|chrUn (257754000-257754136) | |
| 609-744, gnl|fr1|chrUn (257754143-257753980) | |
| 609-744, gnl|galGal2|chr17 (5167685-5167550) | |
| 609-744, gnl|galGal2|chr17 (5167550-5167686) | |
| 609-744, gnl|galGal2|chr17 (5167691-5167522) | |
| 609-744, gnl|hg17|chr3 (160922193-160922333) | |
| 609-744, gnl|hg17|chr4 (13655575-13655713) | |
| 609-744, gnl|hg17|chr9 (129671234-129671425) | |
| 609-744, gnl|Hg17|chr9 (129671373-129671238) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23565-23701) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23703-23565) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23560-23754) | |
| 609-744, gnl|mm7|chr2 (30981208-30981395) | |
| 609-744, gnl|Mm7|chr2 (30981347-30981212) | |
| 609-744, gnl|mm7|chr7 (133062779-133062640) | |
| 609-744, gnl|mm7|chr7 (133062641-133062779) | |
| 609-744, gnl|monDom2|scaffold_12 (65168196-65168058) | |
| 609-744, gnl|monDom2|scaffold_12 (65168059-65168197) | |
| 609-744, gnl|monDom2|scaffold_51 (4864009-4864172) | |
| 609-744, gnl|panTro1|chr11 (114536163-114536354) | |
| 609-744, gnl|panTro1|chr2 (164095258-164095398) | |
| 609-744, gnl|panTro1|chr3 (13887797-13887935) | |
| 609-744, gnl|rheMac2|chr15 (9012825-9012634) | |
| 609-744, gnl|rheMac2|chr2 (128001501-128001361) | |
| 609-744, gnl|rheMac2|chr2 (128001362-128001502) | |
| 609-744, gnl|rn3|chr3 (9936065-9936203) | |
| 609-744, gnl|rn3|chr3 (9936203-9936067) | |
| 609-744, gnl|rn3|chr3 (9936060-9936247) | |
| 609-744, gnl|tetNig1|chr12 (561603-561740) | |
| 609-744, gnl|tetNig1|chr12 (561739-561603) | |
| 609-744, gnl|tetNig1|chr12 (561596-561786) | |
| 609-744, gnl|xenTro1|scaffold_82 (46036-46174) | |
| 609-744, gnl|xenTro1|scaffold_82 (46173-46035) | |
| 609-744, gnl|xenTro1|scaffold_82 (46030-46185) | |
| 844-1500, gnl|bosTau2|chr11 (80398353-80397701) | |
| 844-1500, gnl|Hg17|chr9 (129670085-129669135) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-148, gnl|bosTau2|chr11 (80406256-80406115) | |
| 2-148, gnl|canFam2|chr9 (57354384-57354259) | |
| 2-148, gnl|dasNov1|scaffold_17536 (4284-4392) | |
| 2-148, gnl|echTel1|scaffold_130969 (867-992) | |
| 2-148, gnl|galGal2|chr17 (5164786-5164649) | |
| 2-148, gnl|hg17|chr9 (129676967-129677092) | |
| 2-148, gnl|Hg17|chr9 (129677119-129676972) | |
| 2-148, gnl|loxAfr1|scaffold_3801 (27492-27617) | |
| 2-148, gnl|mm7|chr2 (30989084-30989203) | |
| 2-148, gnl|Mm7|chr2 (30989238-30989089) | |
| 2-148, gnl|monDom2|scaffold_51 (4868998-4869139) | |
| 2-148, gnl|panTro1|chr11 (114541918-114542043) | |
| 2-148, gnl|rheMac2|chr15 (9006825-9006700) | |
| 2-148, gnl|rn3|chr3 (9943216-9943335) | |
| 407-607, gnl|bosTau2|chr11 (80401907-80401707) | |
| 407-607, gnl|Hg17|chr9 (129672904-129672704) | |
| 407-607, gnl|Mm7|chr2 (30983402-30983202) | |
| 609-744, gnl|bosTau2|chr11 (80400705-80400570) | |
| 609-744, gnl|canFam2|chr8 (62342214-62342076) | |
| 609-744, gnl|canFam2|chr8 (62342077-62342215) | |
| 609-744, gnl|canFam2|chr9 (57358759-57358568) | |
| 609-744, gnl|danRer3|chr5 (29076143-29076367) | |
| 609-744, gnl|danRer3|chr5 (29076279-29076146) | |
| 609-744, gnl|danRer3|chr5 (29076136-29076294) | |
| 609-744, gnl|dasNov1|scaffold_17536 (3689-3827) | |
| 609-744, gnl|dasNov1|scaffold_17536 (3826-3688) | |
| 609-744, gnl|dasNov1|scaffold_37826 (16392-16200) | |
| 609-744, gnl|echTel1|scaffold_277136 (36885-36752) | |
| 609-744, gnl|echTel1|scaffold_277136 (36753-36885) | |
| 609-744, gnl|echTel1|scaffold_50589 (1844-2038) | |
| 609-744, gnl|fr1|chrUn (257754153-257753999) | |
| 609-744, gnl|fr1|chrUn (257754000-257754136) | |
| 609-744, gnl|fr1|chrUn (257754143-257753980) | |
| 609-744, gnl|galGal2|chr17 (5167685-5167550) | |
| 609-744, gnl|galGal2|chr17 (5167550-5167686) | |
| 609-744, gnl|galGal2|chr17 (5167691-5167522) | |
| 609-744, gnl|hg17|chr3 (160922193-160922333) | |
| 609-744, gnl|hg17|chr4 (13655575-13655713) | |
| 609-744, gnl|hg17|chr9 (129671234-129671425) | |
| 609-744, gnl|Hg17|chr9 (129671373-129671238) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23565-23701) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23703-23565) | |
| 609-744, gnl|loxAfr1|scaffold_3801 (23560-23754) | |
| 609-744, gnl|mm7|chr2 (30981208-30981395) | |
| 609-744, gnl|Mm7|chr2 (30981347-30981212) | |
| 609-744, gnl|mm7|chr7 (133062779-133062640) | |
| 609-744, gnl|mm7|chr7 (133062641-133062779) | |
| 609-744, gnl|monDom2|scaffold_12 (65168196-65168058) | |
| 609-744, gnl|monDom2|scaffold_12 (65168059-65168197) | |
| 609-744, gnl|monDom2|scaffold_51 (4864009-4864172) | |
| 609-744, gnl|panTro1|chr11 (114536163-114536354) | |
| 609-744, gnl|panTro1|chr2 (164095258-164095398) | |
| 609-744, gnl|panTro1|chr3 (13887797-13887935) | |
| 609-744, gnl|rheMac2|chr15 (9012825-9012634) | |
| 609-744, gnl|rheMac2|chr2 (128001501-128001361) | |
| 609-744, gnl|rheMac2|chr2 (128001362-128001502) | |
| 609-744, gnl|rn3|chr3 (9936065-9936203) | |
| 609-744, gnl|rn3|chr3 (9936203-9936067) | |
| 609-744, gnl|rn3|chr3 (9936060-9936247) | |
| 609-744, gnl|tetNig1|chr12 (561603-561740) | |
| 609-744, gnl|tetNig1|chr12 (561739-561603) | |
| 609-744, gnl|tetNig1|chr12 (561596-561786) | |
| 609-744, gnl|xenTro1|scaffold_82 (46036-46174) | |
| 609-744, gnl|xenTro1|scaffold_82 (46173-46035) | |
| 609-744, gnl|xenTro1|scaffold_82 (46030-46185) | |
| 844-1500, gnl|bosTau2|chr11 (80398353-80397701) | |
| 844-1500, gnl|Hg17|chr9 (129670085-129669135) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| bla (0.497389) | |
| amn (0.417711) | |
| tbr (0.308356) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (0.497389) | |
| amn (0.417711) | |
| tbr (0.308356) | |
| cga (0.279096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| fat (0.147427) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| spc (0.113366) |