Non-Coding RNA Search

Ss1.1-Liv1-LVRM10142F06.5

Sequence:


               
               TTCATTCCCGACGAGAAGAAAGATGCCATGTATTGGGAAAAGAGGCGGAAAAATAATGAA
GCCGCCAAGAGGTCCCGTGAGAAGCGTCGGCTGAATGACCTGGTTTTAGAGAACAAACTC
ATTGCCCTGGGGGAAGAAAATGCCACTTTAAAAGCTGAACTGCTTTCCCTAAAATTAAAG
TTTGGTTTAATTAGCTCCACAGCCTACGCCCAGGAGATTCAGAAACTCAGTAATTCGACA
GCCGTGTACTTCCAAGACTACCAGACTTCCAAATCCACCGTGAGCGCCTTTGTGGATGAG
CCCGAGCCCTCCATGGTGGCCAGCAGCTGCATCTCTGTCATCAAACACTCTCCCCAGAGC
TCTCTGTCTGATGTTTCCGAAGTGTCCTCGCTAGAACATTCGCACGAGGGCCCTGCGCAG
GGTGGCTGCAGAAGCCCTGAAAGCAAGTTCCAGGTCATCAAGCAAGAGCCCATGGAACTG
GAGAGCTATGCCAGGGAGCCGAGAGACGACCGGGGCACCTGTCGGGCGGCTGTGTATCAG
AACTACATGGGGAATTCTTTCCCTGGCTATTCACACTCACCCCCTCTGCTGCAGGTCAAC
CGGTCCTCCAGTAACTCGCCAAGAACATCAGAGACCGATGACGGCACGGTAGGAAAGTCA
TCTGATGGGGAAGATGAGCAGCAGGTACCTAAGGGCCCGATCCACTCTCCCGTCGAGCTT
CAGCGTGTCCACGCCACCGTGGTTAAAGTCCCGGAAGTGAATTCCTCTGCCTTGCCACAC
AAGCTTCGGATTAAAGCCAAAGCCATGCAGATCAAAGTGGAAGCCTTCGATCACGAATTC
GATGGCACGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATTCCCGACGAGAAGAAAGATGCCATGTATTGGGAAAAGAGGCGGAAAAATAATGAA
GCCGCCAAGAGGTCCCGTGAGAAGCGTCGGCTGAATGACCTGGTTTTAGAGAACAAACTC
ATTGCCCTGGGGGAAGAAAATGCCACTTTAAAAGCTGAACTGCTTTCCCTAAAATTAAAG
TTTGGTTTAATTAGCTCCACAGCCTACGCCCAGGAGATTCAGAAACTCAGTAATTCGACA
GCCGTGTACTTCCAAGACTACCAGACTTCCAAATCCACCGTGAGCGCCTTTGTGGATGAG
CCCGAGCCCTCCATGGTGGCCAGCAGCTGCATCTCTGTCATCAAACACTCTCCCCAGAGC
TCTCTGTCTGATGTTTCCGAAGTGTCCTCGCTAGAACATTCGCACGAGGGCCCTGCGCAG
GGTGGCTGCAGAAGCCCTGAAAGCAAGTTCCAGGTCATCAAGCAAGAGCCCATGGAACTG
GAGAGCTATGCCAGGGAGCCGAGAGACGACCGGGGCACCTGTCGGGCGGCTGTGTATCAG
AACTACATGGGGAATTCTTTCCCTGGCTATTCACACTCACCCCCTCTGCTGCAGGTCAAC
CGGTCCTCCAGTAACTCGCCAAGAACATCAGAGACCGATGACGGCACGGTAGGAAAGTCA
TCTGATGGGGAAGATGAGCAGCAGGTACCTAAGGGCCCGATCCACTCTCCCGTCGAGCTT
CAGCGTGTCCACGCCACCGTGGTTAAAGTCCCGGAAGTGAATTCCTCTGCCTTGCCACAC
AAGCTTCGGATTAAAGCCAAAGCCATGCAGATCAAAGTGGAAGCCTTCGATCACGAATTC
GATGGCACGCAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|3642656|gb|AAC36518.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3642656|gb|AAC36518.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr8 (46261529-46262380)
               

               
               1-852, gnl|Hg17|chr9 (91252376-91251525)
               

               
               1-852, gnl|Mm7|chr13 (52009478-52008627)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr8 (46261529-46262380)
               

               
               1-852, gnl|Hg17|chr9 (91252376-91251525)
               

               
               1-852, gnl|Mm7|chr13 (52009478-52008627)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.344392)
               

               
               spl (0.143184)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               spl (0.143184)
               

               
               pla (0.133672)

	1-852, gnl\|bosTau2\|chr8 (46261529-46262380)
	1-852, gnl\|Hg17\|chr9 (91252376-91251525)
	1-852, gnl\|Mm7\|chr13 (52009478-52008627)