Ss1.1-Liv1-LVRM10143C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCAAAATGGCGGCGGAGGTGGATTTTGGCGATCTAGAGCTGTTCGAGGCGTTTGACCA CGCCGAGGAGTCGATTCCGAAGCCCGTTCACACCCGCTTCAAGGAAGACGACGGCGACGA GGAGGATGAGAATGGAGTCGGCGACGCGGAGCTCCGGGAACGGCTTCGGCAGTGCGAGGA AACCGTCGAGCAGCTCCGCGCCGAGAATCAGGAACTTAAAAGAAAATTGAACATTCTCAC TCGACCAAGTGGAATATTGGTGAACAATACTAAGTTAGATGGACCTTTATTACAGATTCT ATTTATGAACAATGTTATTTCAAAGCAATATCATCAAGAAATAGAGGAATTTGTATCAAA TTTAGTAAAAAGATTTGAGGAACAGCAGAAAAATGATGTGGAAAAGACTTCCTTTAATCT TTTGCCCCAGCCATCCAGTGTTATGCTACAAGAGGACCATAAAGTAGAAGAATCCAGTGA CGTTCAAAACAACAAAGAAGCTTTTAGTGTTGTAGGAAGTGTCCTGTATTTTACTAATTT TTGCCTTGATAAATTGGGGCAACCGCTACTAAATGAAAACCCTCAGCTTACGGAAGGATG GGAAATACCCAAGTACCAGCAAGTCTTCAGCCACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCAAAATGGCGGCGGAGGTGGATTTTGGCGATCTAGAGCTGTTCGAGGCGTTTGACCA CGCCGAGGAGTCGATTCCGAAGCCCGTTCACACCCGCTTCAAGGAAGACGACGGCGACGA GGAGGATGAGAATGGAGTCGGCGACGCGGAGCTCCGGGAACGGCTTCGGCAGTGCGAGGA AACCGTCGAGCAGCTCCGCGCCGAGAATCAGGAACTTAAAAGAAAATTGAACATTCTCAC TCGACCAAGTGGAATATTGGTGAACAATACTAAGTTAGATGGACCTTTATTACAGATTCT ATTTATGAACAATGTTATTTCAAAGCAATATCATCAAGAAATAGAGGAATTTGTATCAAA TTTAGTAAAAAGATTTGAGGAACAGCAGAAAAATGATGTGGAAAAGACTTCCTTTAATCT TTTGCCCCAGCCATCCAGTGTTATGCTACAAGAGGACCATAAAGTAGAAGAATCCAGTGA CGTTCAAAACAACAAAGAAGCTTTTAGTGTTGTAGGAAGTGTCCTGTATTTTACTAATTT TTGCCTTGATAAATTGGGGCAACCGCTACTAAATGAAAACCCTCAGCTTACGGAAGGATG GGAAATACCCAAGTACCAGCAAGTCTTCAGCCACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 113-208, - strand, RNAz p=0.998179 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 113-208, - strand, RNAz p=0.998179 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-208, gnl|bosTau2|chr17 (27894159-27894366) | |
| 1-208, gnl|canFam2|chr26 (9912699-9912564) | |
| 1-208, gnl|danRer3|chr17 (38919313-38919444) | |
| 1-208, gnl|dasNov1|scaffold_2337 (136420-136285) | |
| 1-208, gnl|echTel1|scaffold_309476 (45213-45336) | |
| 1-208, gnl|fr1|chrUn (72439620-72439740) | |
| 1-208, gnl|galGal2|chr15 (5846256-5846370) | |
| 1-208, gnl|hg17|chr12 (121510062-121510197) | |
| 1-208, gnl|Hg17|chr12 (121510274-121510067) | |
| 1-208, gnl|loxAfr1|scaffold_674 (78514-78757) | |
| 1-208, gnl|mm7|chr5 (122966560-122966704) | |
| 1-208, gnl|Mm7|chr5 (122966781-122966565) | |
| 1-208, gnl|monDom2|scaffold_97 (2803223-2803403) | |
| 1-208, gnl|oryCun1|scaffold_53290 (142-4) | |
| 1-208, gnl|panTro1|chr10 (124582332-124582467) | |
| 1-208, gnl|rheMac2|chr11 (123741845-123741980) | |
| 1-208, gnl|rn3|chr12 (33871155-33871014) | |
| 325-430, gnl|bosTau2|chr17 (27901225-27901330) | |
| 325-430, gnl|canFam2|chr26 (9921068-9920602) | |
| 325-430, gnl|dasNov1|scaffold_2337 (141799-141336) | |
| 325-430, gnl|echTel1|scaffold_309476 (38716-39163) | |
| 325-430, gnl|galGal2|chr15 (5844434-5844887) | |
| 325-430, gnl|hg17|chr12 (121499863-121500328) | |
| 325-430, gnl|Hg17|chr12 (121499994-121499889) | |
| 325-430, gnl|loxAfr1|scaffold_674 (70195-70662) | |
| 325-430, gnl|mm7|chr5 (122960443-122960969) | |
| 325-430, gnl|Mm7|chr5 (122960574-122960469) | |
| 325-430, gnl|monDom2|scaffold_97 (2793015-2793440) | |
| 325-430, gnl|oryCun1|scaffold_98286 (5111-4657) | |
| 325-430, gnl|panTro1|chr10 (124571950-124572415) | |
| 325-430, gnl|rheMac2|chr11 (123730189-123730654) | |
| 325-430, gnl|rn3|chr12 (33877797-33877273) | |
| 325-430, gnl|xenTro1|scaffold_100 (1510394-1510887) | |
| 509-615, gnl|bosTau2|chr17 (27904729-27904835) | |
| 509-615, gnl|canFam2|chr26 (9927086-9926905) | |
| 509-615, gnl|danRer3|chr17 (38915141-38915314) | |
| 509-615, gnl|dasNov1|scaffold_96728 (3099-3280) | |
| 509-615, gnl|echTel1|scaffold_309476 (35538-35718) | |
| 509-615, gnl|fr1|chrUn (72438730-72438902) | |
| 509-615, gnl|galGal2|chr15 (5843532-5843705) | |
| 509-615, gnl|hg17|chr12 (121492837-121493018) | |
| 509-615, gnl|Hg17|chr12 (121492990-121492884) | |
| 509-615, gnl|mm7|chr5 (122955176-122955357) | |
| 509-615, gnl|Mm7|chr5 (122955329-122955223) | |
| 509-615, gnl|monDom2|scaffold_97 (2789240-2789439) | |
| 509-615, gnl|oryCun1|scaffold_98286 (9737-9556) | |
| 509-615, gnl|panTro1|chr10 (124564843-124565026) | |
| 509-615, gnl|rheMac2|chr11 (123722669-123722850) | |
| 509-615, gnl|rn3|chr12 (33884566-33884385) | |
| 509-615, gnl|tetNig1|chr12 (7011660-7011495) | |
| 509-615, gnl|xenTro1|scaffold_100 (1508408-1508608) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-208, gnl|bosTau2|chr17 (27894159-27894366) | |
| 1-208, gnl|canFam2|chr26 (9912699-9912564) | |
| 1-208, gnl|danRer3|chr17 (38919313-38919444) | |
| 1-208, gnl|dasNov1|scaffold_2337 (136420-136285) | |
| 1-208, gnl|echTel1|scaffold_309476 (45213-45336) | |
| 1-208, gnl|fr1|chrUn (72439620-72439740) | |
| 1-208, gnl|galGal2|chr15 (5846256-5846370) | |
| 1-208, gnl|hg17|chr12 (121510062-121510197) | |
| 1-208, gnl|Hg17|chr12 (121510274-121510067) | |
| 1-208, gnl|loxAfr1|scaffold_674 (78514-78757) | |
| 1-208, gnl|mm7|chr5 (122966560-122966704) | |
| 1-208, gnl|Mm7|chr5 (122966781-122966565) | |
| 1-208, gnl|monDom2|scaffold_97 (2803223-2803403) | |
| 1-208, gnl|oryCun1|scaffold_53290 (142-4) | |
| 1-208, gnl|panTro1|chr10 (124582332-124582467) | |
| 1-208, gnl|rheMac2|chr11 (123741845-123741980) | |
| 1-208, gnl|rn3|chr12 (33871155-33871014) | |
| 325-430, gnl|bosTau2|chr17 (27901225-27901330) | |
| 325-430, gnl|canFam2|chr26 (9921068-9920602) | |
| 325-430, gnl|dasNov1|scaffold_2337 (141799-141336) | |
| 325-430, gnl|echTel1|scaffold_309476 (38716-39163) | |
| 325-430, gnl|galGal2|chr15 (5844434-5844887) | |
| 325-430, gnl|hg17|chr12 (121499863-121500328) | |
| 325-430, gnl|Hg17|chr12 (121499994-121499889) | |
| 325-430, gnl|loxAfr1|scaffold_674 (70195-70662) | |
| 325-430, gnl|mm7|chr5 (122960443-122960969) | |
| 325-430, gnl|Mm7|chr5 (122960574-122960469) | |
| 325-430, gnl|monDom2|scaffold_97 (2793015-2793440) | |
| 325-430, gnl|oryCun1|scaffold_98286 (5111-4657) | |
| 325-430, gnl|panTro1|chr10 (124571950-124572415) | |
| 325-430, gnl|rheMac2|chr11 (123730189-123730654) | |
| 325-430, gnl|rn3|chr12 (33877797-33877273) | |
| 325-430, gnl|xenTro1|scaffold_100 (1510394-1510887) | |
| 509-615, gnl|bosTau2|chr17 (27904729-27904835) | |
| 509-615, gnl|canFam2|chr26 (9927086-9926905) | |
| 509-615, gnl|danRer3|chr17 (38915141-38915314) | |
| 509-615, gnl|dasNov1|scaffold_96728 (3099-3280) | |
| 509-615, gnl|echTel1|scaffold_309476 (35538-35718) | |
| 509-615, gnl|fr1|chrUn (72438730-72438902) | |
| 509-615, gnl|galGal2|chr15 (5843532-5843705) | |
| 509-615, gnl|hg17|chr12 (121492837-121493018) | |
| 509-615, gnl|Hg17|chr12 (121492990-121492884) | |
| 509-615, gnl|mm7|chr5 (122955176-122955357) | |
| 509-615, gnl|Mm7|chr5 (122955329-122955223) | |
| 509-615, gnl|monDom2|scaffold_97 (2789240-2789439) | |
| 509-615, gnl|oryCun1|scaffold_98286 (9737-9556) | |
| 509-615, gnl|panTro1|chr10 (124564843-124565026) | |
| 509-615, gnl|rheMac2|chr11 (123722669-123722850) | |
| 509-615, gnl|rn3|chr12 (33884566-33884385) | |
| 509-615, gnl|tetNig1|chr12 (7011660-7011495) | |
| 509-615, gnl|xenTro1|scaffold_100 (1508408-1508608) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nep (0.183925) | |
| nje (0.16592) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| nje (0.16592) | |
| pgl (0.118483) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| cty (0.10408) |