Non-Coding RNA Search

Ss1.1-Liv1-LVRM10143G09.5

Sequence:


               
               AAGACTTCCTAGGAAGAGGACAGAAGAAGCTGTGTGGGACTAGTTGCTCCAGACAGAAGG
ATGCTGCAGCTGAGCCTGTCCTGGCTGGGACTGGGGCCTGTGTCAGCCTCCCCGTGGCTG
CTTCTGCAGCTGGTCGGTGCTACCTGGCTCCTGTCCCAAATCCTGTCCTGGATCTATGAC
TTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCAAAACGGAACTGGTTT
TGGGGTCACCTGGGCCTGGTGAAGAACAATGAAGAGGGCATGCGGCTGGTAGAAGATCTC
GGCCACTGCTTCCGCGACGTCCATCTCTGGTGGCTAGGGCCCTTGTACCCCGTCCTGCGG
CTTGTCCACCCCAACTTTGTTGCTCCTCTGCTCCAGGCCCCAGCCACCATCATACCCAAG
GATATGCTTTTCTACAGCTTCCTGAAGCCCTGGCTGGGGGTTGGGCTCCTGCTGAGTGCT
GGTGAGAAGTGGAGCCACCAGCGCCGCCTGCTGACACCTGCCTTCCACTTTGATATCTTG
AAGTCATATGTGAAGATTTTCAACAGGAGTGCAGACATCATGCATGCCAAGTGGCAGCGC
CCAGGTTCCCAGCTGGAGCCTTGGGAAAGGCGGAGTGGCCTCGGACACAAATAGTCTGGA
ATCCTGCTCTGCTGAATGGCTTTTTGTCGGGGGTGGCATCACTGATTTTCCTCTCGAAGC
CTCAGTTTTCTCATCTTTAAAATCAAGGTAGTAATTCCTTCTTTTTTT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CTTAAAGGGTGGTCAAGATCATGGAATGTAATCATGCTCCTGGCACAAAGCAGATGCACA
GACGACTTTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACTTCCTAGGAAGAGGACAGAAGAAGCTGTGTGGGACTAGTTGCTCCAGACAGAAGG
ATGCTGCAGCTGAGCCTGTCCTGGCTGGGACTGGGGCCTGTGTCAGCCTCCCCGTGGCTG
CTTCTGCAGCTGGTCGGTGCTACCTGGCTCCTGTCCCAAATCCTGTCCTGGATCTATGAC
TTCTATGACAACTGCTGCCGCCTCCGGTGTTTCCCGCAACCCCCAAAACGGAACTGGTTT
TGGGGTCACCTGGGCCTGGTGAAGAACAATGAAGAGGGCATGCGGCTGGTAGAAGATCTC
GGCCACTGCTTCCGCGACGTCCATCTCTGGTGGCTAGGGCCCTTGTACCCCGTCCTGCGG
CTTGTCCACCCCAACTTTGTTGCTCCTCTGCTCCAGGCCCCAGCCACCATCATACCCAAG
GATATGCTTTTCTACAGCTTCCTGAAGCCCTGGCTGGGGGTTGGGCTCCTGCTGAGTGCT
GGTGAGAAGTGGAGCCACCAGCGCCGCCTGCTGACACCTGCCTTCCACTTTGATATCTTG
AAGTCATATGTGAAGATTTTCAACAGGAGTGCAGACATCATGCATGCCAAGTGGCAGCGC
CCAGGTTCCCAGCTGGAGCCTTGGGAAAGGCGGAGTGGCCTCGGACACAAATAGTCTGGA
ATCCTGCTCTGCTGAATGGCTTTTTGTCGGGGGTGGCATCACTGATTTTCCTCTCGAAGC
CTCAGTTTTCTCATCTTTAAAATCAAGGTAGTAATTCCTTCTTTTTTT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CTTAAAGGGTGGTCAAGATCATGGAATGTAATCATGCTCCTGGCACAAAGCAGATGCACA
GACGACTTTAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61810943|ref|XP_583211.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810943|ref|XP_583211.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               58-216, - strand, RNAz p=0.745243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               58-216, - strand, RNAz p=0.745243

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               58-262, gnl|bosTau2|chr7 (6741946-6741742)
               

               
               58-262, gnl|canFam2|chr20 (49666316-49665780)
               

               
               58-262, gnl|dasNov1|scaffold_102785 (4561-3971)
               

               
               58-262, gnl|echTel1|scaffold_264234 (9242-9716)
               

               
               58-262, gnl|hg17|chr19 (15535620-15536155)
               

               
               58-262, gnl|Hg17|chr19 (15535881-15536085)
               

               
               58-262, gnl|loxAfr1|scaffold_87764 (1353-1903)
               

               
               58-262, gnl|mm7|chr17 (30705587-30706033)
               

               
               58-262, gnl|Mm7|chr17 (30705785-30705989)
               

               
               58-262, gnl|oryCun1|scaffold_83220 (804-1300)
               

               
               58-262, gnl|panTro1|chr20 (16254333-16254868)
               

               
               58-262, gnl|rheMac2|chr19 (15160615-15161144)
               

               
               58-262, gnl|rn3|chr7 (13095366-13095825)
               


               
               453-742, gnl|bosTau2|chr7 (6732836-6732554)
               

               
               453-742, gnl|Hg17|chr19 (15545544-15545822)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-262, gnl|bosTau2|chr7 (6741946-6741742)
               

               
               58-262, gnl|canFam2|chr20 (49666316-49665780)
               

               
               58-262, gnl|dasNov1|scaffold_102785 (4561-3971)
               

               
               58-262, gnl|echTel1|scaffold_264234 (9242-9716)
               

               
               58-262, gnl|hg17|chr19 (15535620-15536155)
               

               
               58-262, gnl|Hg17|chr19 (15535881-15536085)
               

               
               58-262, gnl|loxAfr1|scaffold_87764 (1353-1903)
               

               
               58-262, gnl|mm7|chr17 (30705587-30706033)
               

               
               58-262, gnl|Mm7|chr17 (30705785-30705989)
               

               
               58-262, gnl|oryCun1|scaffold_83220 (804-1300)
               

               
               58-262, gnl|panTro1|chr20 (16254333-16254868)
               

               
               58-262, gnl|rheMac2|chr19 (15160615-15161144)
               

               
               58-262, gnl|rn3|chr7 (13095366-13095825)
               


               
               453-742, gnl|bosTau2|chr7 (6732836-6732554)
               

               
               453-742, gnl|Hg17|chr19 (15545544-15545822)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fbs (0.175346)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)

	58-262, gnl\|bosTau2\|chr7 (6741946-6741742)
	58-262, gnl\|canFam2\|chr20 (49666316-49665780)
	58-262, gnl\|dasNov1\|scaffold_102785 (4561-3971)
	58-262, gnl\|echTel1\|scaffold_264234 (9242-9716)
	58-262, gnl\|hg17\|chr19 (15535620-15536155)
	58-262, gnl\|Hg17\|chr19 (15535881-15536085)
	58-262, gnl\|loxAfr1\|scaffold_87764 (1353-1903)
	58-262, gnl\|mm7\|chr17 (30705587-30706033)
	58-262, gnl\|Mm7\|chr17 (30705785-30705989)
	58-262, gnl\|oryCun1\|scaffold_83220 (804-1300)
	58-262, gnl\|panTro1\|chr20 (16254333-16254868)
	58-262, gnl\|rheMac2\|chr19 (15160615-15161144)
	58-262, gnl\|rn3\|chr7 (13095366-13095825)

	453-742, gnl\|bosTau2\|chr7 (6732836-6732554)
	453-742, gnl\|Hg17\|chr19 (15545544-15545822)