Non-Coding RNA Search

Ss1.1-Liv1-LVRM10144D10.5.5

Sequence:


               
               GAGCATTGCGGGTAGGCGGCGGCTCTGGCTCCACTCAGCGCATCCTGCTCTGCGAGGCAG
ACATGAGGGCGGAGGGCATGTCCCTCTTCCTGGCTCTGGGGCTCCTGGTGGCTGGGCTCT
GCTCCAGGGTCCACTGCCTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGG
GCCAGATCAAGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCG
CCTTCAGCCTCTACAAGCAGCTGGCTCTGACGAACCCGCATGAGAACGTCATCTTCTCCC
CGCTGAGTGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCCCCACCCTGA
CAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACC
AGGGCTTCCAGCACCTCCTGAGGACGCTCAACAGGCTGAGTAACCTGCTGCAGCTGAGGT
TGGGCAATGCCATGTTTGTTGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATG
CCCATGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCA
GGAGACTCATTAATGACTATGTGAAGAATAAGACCGAGGGAAAAATTGTGGACTTGTTCA
AGAAGCTTGACCCACTCACCAAGGTGGTCCTGGTGAACTATATCTACTTTAAAGCCAAGT
GGAAGATGCCCTTCAATCCCAACTTAACCACGGAGGCAGATTTCCACGTGAGCAAGAACA
GGACGGTGAGGGTGCCCATGATGGGCATTAGGGCCCTGACCGTGCCATACTTCCGGGACG
AGGAGCTGGCCTGCACGGTGGTGGAGCTCACATACACCAGCAACGACAGCGCCCTCTTCA
TCCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACGCTGA
GGAGGTGGAGAGACTTCCTGCACCCCAGATGGATCGTTGAACTTTACTTGCCAAAGTTTT
CCATCTCCAGCGACTACAGACTGCATGAGATCCTTCCCCAGCTGGGCATTGAGGAAATCT
TCGGCGACAATGCTAACCTGTCAGGAATCACAAATACCGAGCACTTGAAAGTTTCCCAGG
TGGTCCACAGCGCTGTGCTTGACGTGAACGAGGAGGGCACAGAAGCGGCTGCCGCCACCG
GAATCGACATTAACGTCAGGTCCCTGGAAAGAATCGCTCTGCACTTCAACAGGCCCTTTC
TGTTCGTCATAATCAGCAACGACATCCAGAGCATCATCTTTCTGGGCAAAGTCACCAAGC
CCTAGAGCTCCCCTCCGAGTGGCGAGACCCTCCGAAACGAGCTGGGCACCTCATTCTGGG
CACCTCACCTCTGGCTACCTGGCCCCACCTTTCATCCTTGAGGAGGTACAGTCACCCTCT
GGAGGCGCCACACGCCCAGGGAGTCTGTGCCCTGCTCCGCGGGGGCTCTGAGACCTCCCA
CAGCAATAAAGCATCTTTTGGGGCTGGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCATTGCGGGTAGGCGGCGGCTCTGGCTCCACTCAGCGCATCCTGCTCTGCGAGGCAG
ACATGAGGGCGGAGGGCATGTCCCTCTTCCTGGCTCTGGGGCTCCTGGTGGCTGGGCTCT
GCTCCAGGGTCCACTGCCTCCCAGCGGATGACCTTGCCTCAAAGATTGTGACCCTGAAGG
GCCAGATCAAGAAGCTGCCAGCGCACAACACCGCCGTCGTCTCCAGCAACACCGACTTCG
CCTTCAGCCTCTACAAGCAGCTGGCTCTGACGAACCCGCATGAGAACGTCATCTTCTCCC
CGCTGAGTGTCTCCATAGCCTTGGCCTTCCTGTCTCTGGGGGCCCAAGGCCCCACCCTGA
CAGAGCTCCTGGAAGGCCTCAAGTTCAACCTCACAAAGACCCCCGAGGCAGAAATCCACC
AGGGCTTCCAGCACCTCCTGAGGACGCTCAACAGGCTGAGTAACCTGCTGCAGCTGAGGT
TGGGCAATGCCATGTTTGTTGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATG
CCCATGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCA
GGAGACTCATTAATGACTATGTGAAGAATAAGACCGAGGGAAAAATTGTGGACTTGTTCA
AGAAGCTTGACCCACTCACCAAGGTGGTCCTGGTGAACTATATCTACTTTAAAGCCAAGT
GGAAGATGCCCTTCAATCCCAACTTAACCACGGAGGCAGATTTCCACGTGAGCAAGAACA
GGACGGTGAGGGTGCCCATGATGGGCATTAGGGCCCTGACCGTGCCATACTTCCGGGACG
AGGAGCTGGCCTGCACGGTGGTGGAGCTCACATACACCAGCAACGACAGCGCCCTCTTCA
TCCTCCCTGACGACGGCAGGATGGCGGCCGTGGAAGCCAAGCTGCTCCCGGAGACGCTGA
GGAGGTGGAGAGACTTCCTGCACCCCAGATGGATCGTTGAACTTTACTTGCCAAAGTTTT
CCATCTCCAGCGACTACAGACTGCATGAGATCCTTCCCCAGCTGGGCATTGAGGAAATCT
TCGGCGACAATGCTAACCTGTCAGGAATCACAAATACCGAGCACTTGAAAGTTTCCCAGG
TGGTCCACAGCGCTGTGCTTGACGTGAACGAGGAGGGCACAGAAGCGGCTGCCGCCACCG
GAATCGACATTAACGTCAGGTCCCTGGAAAGAATCGCTCTGCACTTCAACAGGCCCTTTC
TGTTCGTCATAATCAGCAACGACATCCAGAGCATCATCTTTCTGGGCAAAGTCACCAAGC
CCTAGAGCTCCCCTCCGAGTGGCGAGACCCTCCGAAACGAGCTGGGCACCTCATTCTGGG
CACCTCACCTCTGGCTACCTGGCCCCACCTTTCATCCTTGAGGAGGTACAGTCACCCTCT
GGAGGCGCCACACGCCCAGGGAGTCTGTGCCCTGCTCCGCGGGGGCTCTGAGACCTCCCA
CAGCAATAAAGCATCTTTTGGGGCTGGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9GMA6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GMA6_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               406-525, - strand, RNAz p=0.522598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-525, - strand, RNAz p=0.522598

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               47-721, gnl|bosTau2|chr21 (40639740-40639084)
               

               
               47-721, gnl|Hg17|chr14 (94150510-94151183)
               

               
               47-721, gnl|Mm7|chr12 (101902962-101903636)
               


               
               1137-1518, gnl|bosTau2|chr21 (39147350-39146939)
               

               
               1137-1518, gnl|Hg17|chr14 (94159698-94160136)
               

               
               1137-1518, gnl|Mm7|chr12 (101907731-101908141)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-721, gnl|bosTau2|chr21 (40639740-40639084)
               

               
               47-721, gnl|Hg17|chr14 (94150510-94151183)
               

               
               47-721, gnl|Mm7|chr12 (101902962-101903636)
               


               
               1137-1518, gnl|bosTau2|chr21 (39147350-39146939)
               

               
               1137-1518, gnl|Hg17|chr14 (94159698-94160136)
               

               
               1137-1518, gnl|Mm7|chr12 (101907731-101908141)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (5.04279)
               

               
               fli (0.202881)
               

               
               cut (0.169924)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (5.04279)
               

               
               fli (0.202881)
               

               
               cut (0.169924)

	47-721, gnl\|bosTau2\|chr21 (40639740-40639084)
	47-721, gnl\|Hg17\|chr14 (94150510-94151183)
	47-721, gnl\|Mm7\|chr12 (101902962-101903636)

	1137-1518, gnl\|bosTau2\|chr21 (39147350-39146939)
	1137-1518, gnl\|Hg17\|chr14 (94159698-94160136)
	1137-1518, gnl\|Mm7\|chr12 (101907731-101908141)