Ss1.1-Liv1-LVRM10148A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACGCAGACGCACAGGGCTCAGGGCCCGCGTATGGACCCTGCCCCCTCCGCTCCCACT TTCCAGGGCTGTCCGCGCACCCTAATTCTCCAGCCTTCGGCCGCTCTCCCAGCCGGGCAT CTGCACAGCAGTGAGGGACCCAGGAGTCCACCTTGAGACCTTCAGCAACCTCAGCCTTAA CCTTGGCGGTGACCTGGTTCGAGGTCTAGCCAGCCTTAGCATGACAAAGGAATATCAGGA TCTGCAGCATCTGGACAATGAGGAGAATGACCAGCAGCACAGAAAAGGGCCACCTCCTCA ACCGTCACTCCTTCGGCGTCTCTGCTCGGGACCCTGCCTCCTCCTGATTTCCATGGGCCT TAGCCTCCTGCTGCTGGTAGTTGTCTGTGTGATCGGATCCCAGAACTCCAAGCTGCAGGA GGAGCTGCAGGCCCTGAGAGAGACCTTCAGCAACCTCACCGCGAGCACAGACGCCAAGGT CAAGACCCTCAGCATGCAGGGAGGAAATGTGGGCAGAAAGATGAAGTCCCTGGAGTCCCA GCTGGAGAAACAGCAACAGGACCTGAGTGAAGATCACTCCAGCTTGCTGCTCCACGTGAA GCAGTTTGTGTCCGACCTGCGGAGCCTCAGCTGTCAGATGGCTGTCCTCCAGGGCAATGG CTCTGAAAGGACCTGCTGCCCGGTTAACTGGGTGGACTATGAAGGCAGCTGCTACTGGTT CTCCCGCTCTGGGAAGCCCTGGCCGGAGGCCGAGAAGTACTGCCAGCTGGAGAACGCCCA CCTCGTGGTGGTGGGCTCCTGGGAGGAGCAGAAATTTATCCAGCACCACGTGGGCCCTGT GAACTCCTGGATCGGCCTCACTGATCAGAGCGGGCCCTGGAAGTGGGTGGATGGCACCGA CTACGAGTCGGGTTTCAAGAACTGGAGACCCGAGCAGCCGGATGACTGGTACGGGCATGG GCTCGGGGGTGGCGAGGACTGTGCCCACTTTACGGAGGACGGCGGCTGGAACGATGACGT CTGCCAGAGGCCCTACCGCTGGGTCTGCGAGACACAGCGGGACAGGGACAGCGGCAGCTA GGAGTCTCCTCTCCCTCTAATTTATGTCCTCAATGCTTTTACCTGCCACGGGGGTCTTGG TTGGGGGACCCTCCCCTCTGGGTGCTTCCGGATTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACGCAGACGCACAGGGCTCAGGGCCCGCGTATGGACCCTGCCCCCTCCGCTCCCACT TTCCAGGGCTGTCCGCGCACCCTAATTCTCCAGCCTTCGGCCGCTCTCCCAGCCGGGCAT CTGCACAGCAGTGAGGGACCCAGGAGTCCACCTTGAGACCTTCAGCAACCTCAGCCTTAA CCTTGGCGGTGACCTGGTTCGAGGTCTAGCCAGCCTTAGCATGACAAAGGAATATCAGGA TCTGCAGCATCTGGACAATGAGGAGAATGACCAGCAGCACAGAAAAGGGCCACCTCCTCA ACCGTCACTCCTTCGGCGTCTCTGCTCGGGACCCTGCCTCCTCCTGATTTCCATGGGCCT TAGCCTCCTGCTGCTGGTAGTTGTCTGTGTGATCGGATCCCAGAACTCCAAGCTGCAGGA GGAGCTGCAGGCCCTGAGAGAGACCTTCAGCAACCTCACCGCGAGCACAGACGCCAAGGT CAAGACCCTCAGCATGCAGGGAGGAAATGTGGGCAGAAAGATGAAGTCCCTGGAGTCCCA GCTGGAGAAACAGCAACAGGACCTGAGTGAAGATCACTCCAGCTTGCTGCTCCACGTGAA GCAGTTTGTGTCCGACCTGCGGAGCCTCAGCTGTCAGATGGCTGTCCTCCAGGGCAATGG CTCTGAAAGGACCTGCTGCCCGGTTAACTGGGTGGACTATGAAGGCAGCTGCTACTGGTT CTCCCGCTCTGGGAAGCCCTGGCCGGAGGCCGAGAAGTACTGCCAGCTGGAGAACGCCCA CCTCGTGGTGGTGGGCTCCTGGGAGGAGCAGAAATTTATCCAGCACCACGTGGGCCCTGT GAACTCCTGGATCGGCCTCACTGATCAGAGCGGGCCCTGGAAGTGGGTGGATGGCACCGA CTACGAGTCGGGTTTCAAGAACTGGAGACCCGAGCAGCCGGATGACTGGTACGGGCATGG GCTCGGGGGTGGCGAGGACTGTGCCCACTTTACGGAGGACGGCGGCTGGAACGATGACGT CTGCCAGAGGCCCTACCGCTGGGTCTGCGAGACACAGCGGGACAGGGACAGCGGCAGCTA GGAGTCTCCTCTCCCTCTAATTTATGTCCTCAATGCTTTTACCTGCCACGGGGGTCTTGG TTGGGGGACCCTCCCCTCTGGGTGCTTCCGGATTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-120, - strand, RNAz p=0.995184 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, - strand, RNAz p=0.995184 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-168, gnl|bosTau2|chr19 (20442332-20442169) | |
| 1-168, gnl|canFam2|chr5 (35156218-35156550) | |
| 1-168, gnl|dasNov1|scaffold_139789 (2949-3276) | |
| 1-168, gnl|hg17|chr17 (7023139-7023504) | |
| 1-168, gnl|Hg17|chr17 (7023400-7023233) | |
| 1-168, gnl|mm7|chr11 (70136159-70135854) | |
| 1-168, gnl|monDom2|scaffold_66 (4074943-4075286) | |
| 1-168, gnl|oryCun1|scaffold_124540 (3218-2911) | |
| 1-168, gnl|panTro1|chr19_random (44730471-44730105) | |
| 1-168, gnl|rheMac2|chr16 (6905036-6905400) | |
| 1-168, gnl|rn3|chr10 (56913378-56913070) | |
| 286-404, gnl|bosTau2|chr19 (20440468-20440350) | |
| 286-404, gnl|canFam2|chr5 (35154900-35155047) | |
| 286-404, gnl|dasNov1|scaffold_139789 (1373-1511) | |
| 286-404, gnl|echTel1|scaffold_294150 (2668-2812) | |
| 286-404, gnl|hg17|chr17 (7021247-7021394) | |
| 286-404, gnl|Hg17|chr17 (7021371-7021253) | |
| 286-404, gnl|loxAfr1|scaffold_100223 (4670-4523) | |
| 286-404, gnl|mm7|chr11 (70137695-70137551) | |
| 286-404, gnl|Mm7|chr11 (70137569-70137687) | |
| 286-404, gnl|monDom2|scaffold_66 (4068590-4068724) | |
| 286-404, gnl|panTro1|chr19_random (44835118-44834971) | |
| 286-404, gnl|rheMac2|chr16 (6903123-6903270) | |
| 286-404, gnl|rn3|chr10 (56914886-56914742) | |
| 659-811, gnl|bosTau2|chr19 (20439579-20439427) | |
| 659-811, gnl|canFam2|chr5 (35154106-35154218) | |
| 659-811, gnl|dasNov1|scaffold_139789 (4-113) | |
| 659-811, gnl|echTel1|scaffold_294150 (1403-1515) | |
| 659-811, gnl|fr1|chrUn (296997867-296997979) | |
| 659-811, gnl|hg17|chr17 (7018176-7018288) | |
| 659-811, gnl|Hg17|chr17 (7018333-7018181) | |
| 659-811, gnl|loxAfr1|scaffold_23922 (18792-18906) | |
| 659-811, gnl|mm7|chr11 (70138764-70138652) | |
| 659-811, gnl|Mm7|chr11 (70138605-70138757) | |
| 659-811, gnl|monDom2|scaffold_66 (4067225-4067337) | |
| 659-811, gnl|panTro1|chr19 (7283527-7283637) | |
| 659-811, gnl|rheMac2|chr16 (6787174-6787286) | |
| 659-811, gnl|rn3|chr10 (56916073-56915961) | |
| 914-1176, gnl|bosTau2|chr19 (20439112-20438852) | |
| 914-1176, gnl|Hg17|chr17 (7017881-7017613) | |
| 914-1176, gnl|Mm7|chr11 (70139056-70139316) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-168, gnl|bosTau2|chr19 (20442332-20442169) | |
| 1-168, gnl|canFam2|chr5 (35156218-35156550) | |
| 1-168, gnl|dasNov1|scaffold_139789 (2949-3276) | |
| 1-168, gnl|hg17|chr17 (7023139-7023504) | |
| 1-168, gnl|Hg17|chr17 (7023400-7023233) | |
| 1-168, gnl|mm7|chr11 (70136159-70135854) | |
| 1-168, gnl|monDom2|scaffold_66 (4074943-4075286) | |
| 1-168, gnl|oryCun1|scaffold_124540 (3218-2911) | |
| 1-168, gnl|panTro1|chr19_random (44730471-44730105) | |
| 1-168, gnl|rheMac2|chr16 (6905036-6905400) | |
| 1-168, gnl|rn3|chr10 (56913378-56913070) | |
| 286-404, gnl|bosTau2|chr19 (20440468-20440350) | |
| 286-404, gnl|canFam2|chr5 (35154900-35155047) | |
| 286-404, gnl|dasNov1|scaffold_139789 (1373-1511) | |
| 286-404, gnl|echTel1|scaffold_294150 (2668-2812) | |
| 286-404, gnl|hg17|chr17 (7021247-7021394) | |
| 286-404, gnl|Hg17|chr17 (7021371-7021253) | |
| 286-404, gnl|loxAfr1|scaffold_100223 (4670-4523) | |
| 286-404, gnl|mm7|chr11 (70137695-70137551) | |
| 286-404, gnl|Mm7|chr11 (70137569-70137687) | |
| 286-404, gnl|monDom2|scaffold_66 (4068590-4068724) | |
| 286-404, gnl|panTro1|chr19_random (44835118-44834971) | |
| 286-404, gnl|rheMac2|chr16 (6903123-6903270) | |
| 286-404, gnl|rn3|chr10 (56914886-56914742) | |
| 659-811, gnl|bosTau2|chr19 (20439579-20439427) | |
| 659-811, gnl|canFam2|chr5 (35154106-35154218) | |
| 659-811, gnl|dasNov1|scaffold_139789 (4-113) | |
| 659-811, gnl|echTel1|scaffold_294150 (1403-1515) | |
| 659-811, gnl|fr1|chrUn (296997867-296997979) | |
| 659-811, gnl|hg17|chr17 (7018176-7018288) | |
| 659-811, gnl|Hg17|chr17 (7018333-7018181) | |
| 659-811, gnl|loxAfr1|scaffold_23922 (18792-18906) | |
| 659-811, gnl|mm7|chr11 (70138764-70138652) | |
| 659-811, gnl|Mm7|chr11 (70138605-70138757) | |
| 659-811, gnl|monDom2|scaffold_66 (4067225-4067337) | |
| 659-811, gnl|panTro1|chr19 (7283527-7283637) | |
| 659-811, gnl|rheMac2|chr16 (6787174-6787286) | |
| 659-811, gnl|rn3|chr10 (56916073-56915961) | |
| 914-1176, gnl|bosTau2|chr19 (20439112-20438852) | |
| 914-1176, gnl|Hg17|chr17 (7017881-7017613) | |
| 914-1176, gnl|Mm7|chr11 (70139056-70139316) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| cli (0.152812) |