Non-Coding RNA Search

Ss1.1-Liv1-LVRM10149A02.5

Sequence:


               
               ACAGAGCACACAGGGGACGCCAGCTCCTGGAGCCCTTTGGCGAATTTCTGGGCGTTCTGG
TGGTCCCTCAGCAGCACCTCCTCGGCGTCAGCCAGTCCCACCAGGGCAGCTGCAGCCAGC
ACCCCTGCCTGGCGCATCCCCCCGCCCAGGGCTTTCCGGAGGCGCCAGGCTTCTTCAATG
AAGTGCTTGGGTCCCCCGACCAGGGCTCCCACTGGTGCACCAAGACCCTTGGAGAAGCAG
AGAGACACAGAGTCACAGTGCTGCGCGATGCAGGCGGGGGGCACGCGCAGAGCCACTGCG
GCGTTCATCAACTCGTCAGCGCTCACGGCCTGCAGGCGCTGGCACAGCTCCTTGGGCGGA
AGCCCGTCCACTCTCACCATCACCACGTTCGTCTCCACGGGGCTAAGATCCACGGAGCAC
ACAGGGGACGCCAGCTCACAGACTGGGTGGTAGGGGCTCCCCAGGCCCCGTGTGATCAGC
CTCTCCAGCTCTGCCAGGTCCAGGGTGCCATGGGGCAGGTCTGGGAGAGGATGGGAATGC
ACCCCCGCAATCTGAGCCACCCCGCCCTGCTCATAAACGTGGACGTGGCATTCCTGCCCG
AGGAGGAGCTGGGAGCCCCGGCGCCGGCAGTGACACATCACAGAGATGAGGTTGGCCATG
GTGTTTGTGGGCACAAACAGGGTCCGCTCCACCCCGAGCAGCTCCGCAGCCGTGGCCTGC
AGCTCGCGCACGGTGGGGTCCTCGCCATAGTCGTCGTCCCCCACGACGGCCTCTGCCATG
GCGCGCCTCATGGCCGGCCCGGGCTGGGTAACCGTGTCGCTGCGCAGGTCCACCACGTGC
GTCGGGACCCCGGCCAGGCTCCCAGACCCCCGCGCCCAGAGGGCCCAGTGCCGCCGGGCC
GCGGCCCGGGACAGGCTGGAGAGCATGGCGGGGGCCGCGCCGCGCCCCCTGCCCCGACTC
TTCCCGGCGGGAGCGGCCCGGAGCGGCGGGGCAGGGCTTCCCGGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAGCACACAGGGGACGCCAGCTCCTGGAGCCCTTTGGCGAATTTCTGGGCGTTCTGG
TGGTCCCTCAGCAGCACCTCCTCGGCGTCAGCCAGTCCCACCAGGGCAGCTGCAGCCAGC
ACCCCTGCCTGGCGCATCCCCCCGCCCAGGGCTTTCCGGAGGCGCCAGGCTTCTTCAATG
AAGTGCTTGGGTCCCCCGACCAGGGCTCCCACTGGTGCACCAAGACCCTTGGAGAAGCAG
AGAGACACAGAGTCACAGTGCTGCGCGATGCAGGCGGGGGGCACGCGCAGAGCCACTGCG
GCGTTCATCAACTCGTCAGCGCTCACGGCCTGCAGGCGCTGGCACAGCTCCTTGGGCGGA
AGCCCGTCCACTCTCACCATCACCACGTTCGTCTCCACGGGGCTAAGATCCACGGAGCAC
ACAGGGGACGCCAGCTCACAGACTGGGTGGTAGGGGCTCCCCAGGCCCCGTGTGATCAGC
CTCTCCAGCTCTGCCAGGTCCAGGGTGCCATGGGGCAGGTCTGGGAGAGGATGGGAATGC
ACCCCCGCAATCTGAGCCACCCCGCCCTGCTCATAAACGTGGACGTGGCATTCCTGCCCG
AGGAGGAGCTGGGAGCCCCGGCGCCGGCAGTGACACATCACAGAGATGAGGTTGGCCATG
GTGTTTGTGGGCACAAACAGGGTCCGCTCCACCCCGAGCAGCTCCGCAGCCGTGGCCTGC
AGCTCGCGCACGGTGGGGTCCTCGCCATAGTCGTCGTCCCCCACGACGGCCTCTGCCATG
GCGCGCCTCATGGCCGGCCCGGGCTGGGTAACCGTGTCGCTGCGCAGGTCCACCACGTGC
GTCGGGACCCCGGCCAGGCTCCCAGACCCCCGCGCCCAGAGGGCCCAGTGCCGCCGGGCC
GCGGCCCGGGACAGGCTGGAGAGCATGGCGGGGGCCGCGCCGCGCCCCCTGCCCCGACTC
TTCCCGGCGGGAGCGGCCCGGAGCGGCGGGGCAGGGCTTCCCGGACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811299|ref|XP_584041.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811299|ref|XP_584041.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               113-242, - strand, RNAz p=0.993266

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-242, - strand, RNAz p=0.993266

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               34-242, gnl|bosTau2|chr19 (45695781-45695988)
               

               
               34-242, gnl|Hg17|chr17 (73756961-73757169)
               

               
               34-242, gnl|Mm7|chr11 (117978404-117978611)
               


               
               433-554, gnl|bosTau2|chr19 (45697060-45697181)
               

               
               433-554, gnl|canFam2|chr9 (5912942-5912751)
               

               
               433-554, gnl|fr1|chrUn (301889808-301889999)
               

               
               433-554, gnl|hg17|chr17 (73758279-73758469)
               

               
               433-554, gnl|Hg17|chr17 (73758347-73758467)
               

               
               433-554, gnl|loxAfr1|scaffold_32357 (20696-20514)
               

               
               433-554, gnl|mm7|chr11 (117979479-117979670)
               

               
               433-554, gnl|Mm7|chr11 (117979547-117979668)
               

               
               433-554, gnl|oryCun1|scaffold_61171 (1282-1091)
               

               
               433-554, gnl|panTro1|chr19 (77316630-77316820)
               

               
               433-554, gnl|rheMac2|chr16 (73546794-73546986)
               

               
               433-554, gnl|tetNig1|chrUn_random (50807768-50807577)
               


               
               725-976, gnl|bosTau2|chr19 (45700085-45700336)
               

               
               725-976, gnl|Hg17|chr17 (73761911-73762179)
               

               
               725-976, gnl|Mm7|chr11 (117982216-117982480)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-242, gnl|bosTau2|chr19 (45695781-45695988)
               

               
               34-242, gnl|Hg17|chr17 (73756961-73757169)
               

               
               34-242, gnl|Mm7|chr11 (117978404-117978611)
               


               
               433-554, gnl|bosTau2|chr19 (45697060-45697181)
               

               
               433-554, gnl|canFam2|chr9 (5912942-5912751)
               

               
               433-554, gnl|fr1|chrUn (301889808-301889999)
               

               
               433-554, gnl|hg17|chr17 (73758279-73758469)
               

               
               433-554, gnl|Hg17|chr17 (73758347-73758467)
               

               
               433-554, gnl|loxAfr1|scaffold_32357 (20696-20514)
               

               
               433-554, gnl|mm7|chr11 (117979479-117979670)
               

               
               433-554, gnl|Mm7|chr11 (117979547-117979668)
               

               
               433-554, gnl|oryCun1|scaffold_61171 (1282-1091)
               

               
               433-554, gnl|panTro1|chr19 (77316630-77316820)
               

               
               433-554, gnl|rheMac2|chr16 (73546794-73546986)
               

               
               433-554, gnl|tetNig1|chrUn_random (50807768-50807577)
               


               
               725-976, gnl|bosTau2|chr19 (45700085-45700336)
               

               
               725-976, gnl|Hg17|chr17 (73761911-73762179)
               

               
               725-976, gnl|Mm7|chr11 (117982216-117982480)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	34-242, gnl\|bosTau2\|chr19 (45695781-45695988)
	34-242, gnl\|Hg17\|chr17 (73756961-73757169)
	34-242, gnl\|Mm7\|chr11 (117978404-117978611)

	433-554, gnl\|bosTau2\|chr19 (45697060-45697181)
	433-554, gnl\|canFam2\|chr9 (5912942-5912751)
	433-554, gnl\|fr1\|chrUn (301889808-301889999)
	433-554, gnl\|hg17\|chr17 (73758279-73758469)
	433-554, gnl\|Hg17\|chr17 (73758347-73758467)
	433-554, gnl\|loxAfr1\|scaffold_32357 (20696-20514)
	433-554, gnl\|mm7\|chr11 (117979479-117979670)
	433-554, gnl\|Mm7\|chr11 (117979547-117979668)
	433-554, gnl\|oryCun1\|scaffold_61171 (1282-1091)
	433-554, gnl\|panTro1\|chr19 (77316630-77316820)
	433-554, gnl\|rheMac2\|chr16 (73546794-73546986)
	433-554, gnl\|tetNig1\|chrUn_random (50807768-50807577)

	725-976, gnl\|bosTau2\|chr19 (45700085-45700336)
	725-976, gnl\|Hg17\|chr17 (73761911-73762179)
	725-976, gnl\|Mm7\|chr11 (117982216-117982480)