Ss1.1-Liv1-LVRM10150A01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCGCGTGGTGATTCCGGGCTCGTGTCCTCGGCATGGGTCCTTTGCTGTCGCCGCTGCTG ACCCTGCTGTCGCTCCTCTCCGGTCCTTGGCTCGAACTAGGAAATGGGCAGACGACTGGC ATGGTCCAGCTACCTGGTGGGAGATTCCAGATGGGAACAAATTCACCAGATGGCAGAGAT GGTGAAGGACCTGTCCGGGAGGTGACAGTAAAACCCTTTGCCATTGACATATTTCCTGTC ACCAACAAAGATTTCAGGGACTTTGTCAGGGAGAAGAAGTACCGGACAGAGGCTGAGGCG TTTGGGTGGAGTTTTGTCTTTGAGGACCTTGTGCCCAATGAGCTTAGAAGCAAAGCAACC CATCAAATGCAGTCTCTTCTCTGGTGGCTGCCAGTGGAAAGGGCATTCTGGAGGCAGCCT GCAGGTCCCGGCTCTGGCATCCGAGAGAGACTGGAGTTCCCAGTGGTACACGTGAGCTGG AATGATGCCCGTGCCTACTGTGCTTGGCGGGGGAAACGGCTGCCCACTGAGGAAGAGTGG GAGTTTGCTGCCCGTGGGGGCTTGAAGGGTCAGGTGTACCCCTGGGGAAACCAGTTCCAG CCAAACCGCACCAACCTGTGGCAGGGAAAGTTCCCCAAGGGTGACAAGGCTGAGGATGGC TTCCACGGAGTCTCCCCGGTGAACGCTTTCCCCCCGCAGAACAACTACGGGCTCTATGAC CTCATGGGCAACGTGTGGGAGTGGACAGCGTCACCGTACCAGGCTGCCGACCAGGACATG CGTGTCCTCCGGGGGGCGTCTTGGATCGACACAGCCGACGGCTCCGCCAATCACCGGGCC CGCGTCACCACCAGGATGGGCAACACTCCAGATTCAGCCTCAGACAACCTAGGCTTCCGC TGTGCTTCCAGCGCAGGCCGACCGCCTGGGGAGCTGTGAGCAGCCGTGCAGGGAAGAGTC CCCGTGGTCCCCAGGTCGCTCCCTGGCCACATTCCAAACAGCCAGACTCCGAGCTCTTCA GCTTCAGCCTCAGGAACGACCTCCTTCCCCTCCGCTGTGCTCGGTGGCAGGCACCTGTCC CCAGGGCAGGAGAGGACCCTGACCTCTGAGGAGGGGCGCCACTGTCTCTCGGAGAAGGAG CCCCAGCTATTGATTGTGGCCAGGAGCCAGGTGTCTCTCTGAGAGGTCAAATATTGACCA AAGAGGGGCCAAATACTCAAACAGTTGGGGCAGAGTGCTCTGAAAGGCAGTTTGCTAGAA AATTTTAAATCTGCTTCCTCCCCTTTTGACCTAAGGATCTGACACTGGTTTCTCAAGGCA GAATTTCTCCAGGTCTCCTTGTTTTCCCAGCCAACTGCTGTTGAAGGAAAATGGTTCCTT CCTTTGCCCCATCTGTGGGGTTTCACGCTCCTCCGAGGGAACCTGATTTCCACTGTCTGT GACACGCAGTTCCGCGGGCTCTTTAAAGCACACCGTGGGTTGTAAAACGGTCTGGGAAGA TTGACTTGGCGACACCGTCCCATGGGAATCCCAGAGTAAATAATACTCCAGAAAGACAGC TAGCGGAAGCTTCCCTTTCTATTGTTACTGATGGGAGGGCTACCATATGCCTCTAAAAAC ATGTTCCCAGAGAAGAACCTGCTCCCATGGTGTCCCTGGACGTCGTGAGGTCTGTAAAAT CTCCTGTGCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCGCGTGGTGATTCCGGGCTCGTGTCCTCGGCATGGGTCCTTTGCTGTCGCCGCTGCTG ACCCTGCTGTCGCTCCTCTCCGGTCCTTGGCTCGAACTAGGAAATGGGCAGACGACTGGC ATGGTCCAGCTACCTGGTGGGAGATTCCAGATGGGAACAAATTCACCAGATGGCAGAGAT GGTGAAGGACCTGTCCGGGAGGTGACAGTAAAACCCTTTGCCATTGACATATTTCCTGTC ACCAACAAAGATTTCAGGGACTTTGTCAGGGAGAAGAAGTACCGGACAGAGGCTGAGGCG TTTGGGTGGAGTTTTGTCTTTGAGGACCTTGTGCCCAATGAGCTTAGAAGCAAAGCAACC CATCAAATGCAGTCTCTTCTCTGGTGGCTGCCAGTGGAAAGGGCATTCTGGAGGCAGCCT GCAGGTCCCGGCTCTGGCATCCGAGAGAGACTGGAGTTCCCAGTGGTACACGTGAGCTGG AATGATGCCCGTGCCTACTGTGCTTGGCGGGGGAAACGGCTGCCCACTGAGGAAGAGTGG GAGTTTGCTGCCCGTGGGGGCTTGAAGGGTCAGGTGTACCCCTGGGGAAACCAGTTCCAG CCAAACCGCACCAACCTGTGGCAGGGAAAGTTCCCCAAGGGTGACAAGGCTGAGGATGGC TTCCACGGAGTCTCCCCGGTGAACGCTTTCCCCCCGCAGAACAACTACGGGCTCTATGAC CTCATGGGCAACGTGTGGGAGTGGACAGCGTCACCGTACCAGGCTGCCGACCAGGACATG CGTGTCCTCCGGGGGGCGTCTTGGATCGACACAGCCGACGGCTCCGCCAATCACCGGGCC CGCGTCACCACCAGGATGGGCAACACTCCAGATTCAGCCTCAGACAACCTAGGCTTCCGC TGTGCTTCCAGCGCAGGCCGACCGCCTGGGGAGCTGTGAGCAGCCGTGCAGGGAAGAGTC CCCGTGGTCCCCAGGTCGCTCCCTGGCCACATTCCAAACAGCCAGACTCCGAGCTCTTCA GCTTCAGCCTCAGGAACGACCTCCTTCCCCTCCGCTGTGCTCGGTGGCAGGCACCTGTCC CCAGGGCAGGAGAGGACCCTGACCTCTGAGGAGGGGCGCCACTGTCTCTCGGAGAAGGAG CCCCAGCTATTGATTGTGGCCAGGAGCCAGGTGTCTCTCTGAGAGGTCAAATATTGACCA AAGAGGGGCCAAATACTCAAACAGTTGGGGCAGAGTGCTCTGAAAGGCAGTTTGCTAGAA AATTTTAAATCTGCTTCCTCCCCTTTTGACCTAAGGATCTGACACTGGTTTCTCAAGGCA GAATTTCTCCAGGTCTCCTTGTTTTCCCAGCCAACTGCTGTTGAAGGAAAATGGTTCCTT CCTTTGCCCCATCTGTGGGGTTTCACGCTCCTCCGAGGGAACCTGATTTCCACTGTCTGT GACACGCAGTTCCGCGGGCTCTTTAAAGCACACCGTGGGTTGTAAAACGGTCTGGGAAGA TTGACTTGGCGACACCGTCCCATGGGAATCCCAGAGTAAATAATACTCCAGAAAGACAGC TAGCGGAAGCTTCCCTTTCTATTGTTACTGATGGGAGGGCTACCATATGCCTCTAAAAAC ATGTTCCCAGAGAAGAACCTGCTCCCATGGTGTCCCTGGACGTCGTGAGGTCTGTAAAAT CTCCTGTGCTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 99-262, gnl|bosTau2|chr25 (23523934-23524097) | |
| 99-262, gnl|Hg17|chr7 (64677276-64677439) | |
| 99-262, gnl|Mm7|chr5 (129087731-129087894) | |
| 415-570, gnl|bosTau2|chr25 (23528258-23528413) | |
| 415-570, gnl|canFam2|chr6 (3565878-3566073) | |
| 415-570, gnl|danRer3|chr25 (9100887-9101043) | |
| 415-570, gnl|dasNov1|scaffold_1319 (135037-135230) | |
| 415-570, gnl|echTel1|scaffold_231469 (2855-2665) | |
| 415-570, gnl|fr1|chrUn (44257517-44257685) | |
| 415-570, gnl|galGal2|chr19 (4587895-4588056) | |
| 415-570, gnl|hg17|chr7 (55916482-55916676) | |
| 415-570, gnl|Hg17|chr7 (55916485-55916640) | |
| 415-570, gnl|loxAfr1|scaffold_14093 (22114-21920) | |
| 415-570, gnl|mm7|chr5 (129092514-129092686) | |
| 415-570, gnl|Mm7|chr5 (129092517-129092672) | |
| 415-570, gnl|monDom2|scaffold_56 (4382414-4382243) | |
| 415-570, gnl|oryCun1|scaffold_177419 (43664-43855) | |
| 415-570, gnl|panTro1|chr6 (57613153-57613347) | |
| 415-570, gnl|rheMac2|chr3 (70052997-70052803) | |
| 415-570, gnl|rn3|chr12 (27876855-27877035) | |
| 415-570, gnl|tetNig1|chr7 (7724463-7724625) | |
| 415-570, gnl|xenTro1|scaffold_63 (1116605-1116417) | |
| 853-1313, gnl|bosTau2|chr25 (23532043-23532484) | |
| 853-1313, gnl|Hg17|chr7 (55921428-55921884) | |
| 853-1313, gnl|Mm7|chr5 (129100469-129100870) | |
| 1319-1688, gnl|bosTau2|chr25 (23532582-23532954) | |
| 1319-1688, gnl|Hg17|chr7 (55921921-55922563) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-262, gnl|bosTau2|chr25 (23523934-23524097) | |
| 99-262, gnl|Hg17|chr7 (64677276-64677439) | |
| 99-262, gnl|Mm7|chr5 (129087731-129087894) | |
| 415-570, gnl|bosTau2|chr25 (23528258-23528413) | |
| 415-570, gnl|canFam2|chr6 (3565878-3566073) | |
| 415-570, gnl|danRer3|chr25 (9100887-9101043) | |
| 415-570, gnl|dasNov1|scaffold_1319 (135037-135230) | |
| 415-570, gnl|echTel1|scaffold_231469 (2855-2665) | |
| 415-570, gnl|fr1|chrUn (44257517-44257685) | |
| 415-570, gnl|galGal2|chr19 (4587895-4588056) | |
| 415-570, gnl|hg17|chr7 (55916482-55916676) | |
| 415-570, gnl|Hg17|chr7 (55916485-55916640) | |
| 415-570, gnl|loxAfr1|scaffold_14093 (22114-21920) | |
| 415-570, gnl|mm7|chr5 (129092514-129092686) | |
| 415-570, gnl|Mm7|chr5 (129092517-129092672) | |
| 415-570, gnl|monDom2|scaffold_56 (4382414-4382243) | |
| 415-570, gnl|oryCun1|scaffold_177419 (43664-43855) | |
| 415-570, gnl|panTro1|chr6 (57613153-57613347) | |
| 415-570, gnl|rheMac2|chr3 (70052997-70052803) | |
| 415-570, gnl|rn3|chr12 (27876855-27877035) | |
| 415-570, gnl|tetNig1|chr7 (7724463-7724625) | |
| 415-570, gnl|xenTro1|scaffold_63 (1116605-1116417) | |
| 853-1313, gnl|bosTau2|chr25 (23532043-23532484) | |
| 853-1313, gnl|Hg17|chr7 (55921428-55921884) | |
| 853-1313, gnl|Mm7|chr5 (129100469-129100870) | |
| 1319-1688, gnl|bosTau2|chr25 (23532582-23532954) | |
| 1319-1688, gnl|Hg17|chr7 (55921921-55922563) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cty (0.20816) | |
| col (0.195008) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eje (0.0988338) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| col (0.195008) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eje (0.0988338) |