Ss1.1-Liv1-LVRM10153D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTGGTCCTGACCTCCCTCGCCTCTTCTGCAACTTGGGCTCCTGAATCAGAGACCTGCA GGCATAGGAGCTGCCCTCCTTCCAAGATGTGGCTTCTCCCGCTGGTCCTGACCTCCCTCG CCTCTTCTGCAACTTGGGCAGGGCAGCCAGCCTCGCCGCCTGTTGTGGACACTGCCCAGG GCCGAGTCCTGGGGAAGTACGTCAGCTTAGAAGGCCTGGCACAGCCGGTGGCCGTCTTCC TGGGAGTCCCTTTTGCCAAGCCCCCTCTCGGATCCTTGAGGTTTGCTCCGCCGCAGCCTG CAGAACCATGGAGCTTCGTGAAGAACACCACCTCCTACCCTCCCATGTGCTGCCAGGACC CAGTAGCGGGGCAGATGACCTCAGATCTATTTACCAACAGAAAGGAGAGGCTCATTCCGG AGTTTTCTGAAGACTGTCTCTACCTAAATATTTACACCCCTGCTGACCTGACAAAGAGGG GCAGACTGCCGGTGATGGTGTGGATCCACGGAGGAGGTCTGGTGGTGGGCGGGGCTTCCA CCTATGATGGACTGGCCCTCGCTGCGCATGAAAACGTGGTGGTGGTGGCCATCCAGTACC GCCTGGGCATCTGGGGATTCTTCAGCACAGGGGACGAACACAGCCGGGGCAACTGGGGTC ACTTGGACCAGGTGGCCGCACTGCACTGGGTCCAGGAGAACATCGCCAACTTTGGAGGCG ACCCAGGCTCTGTGACCATCTTTGGAGAGTCAGCAGGAGGGGAAAGTGTCTCTGTTCTGG TGTTGTCTCCCTTGGCCAAGAACCTCTTCCACCGGGCCATCTCTGAGAGTGGCGTGGCCC TCACTGTTGCCCTGGTCAGGAAGGACATGAAGGCTGCAGCTAAGCAAATTGCTGTCCTTG CTGGGTGTAAAACCACCACCTCGGCTGTCTTTGTTCACTGCCTGCGCCAGAAGTCGGAGG ACGAGCTCTTGGACTTAACGCTGAAGATGAAATTTTTAACTCTTGATTTGCATGGAGACC AAAGAGAGAGCCATCCCTTCCTGACCACTGTGGTGGATGGAGTGCTGCTGCCCAAGATGC CTGAAGAGATTCTGGCTGAAAAGGATTTCAACACTGTCCCCTACATCGTGGGAATCAACA AGCAAGAGTTTGGCTGGCTTCTGCCAACGATGATGGGCTTCCCCCTCTCTGAAGGCAAGC TGGACCAGAAGACGGCCACGTCACTCCTGTGGAAGTCCTACCCCATCGCTAACATCCCTG AGGAACTGACTCCAGTGGCCACTGACAAGTATTTGGGGGGGACAGACGACCCCGTCAAAA AGAAAGACCTGTTCCTGGACTTGATGGGGGATGTGGTGTTTGGTGTCCCATCTGTGACGG TGGCCCGTCAACACAGAGATGCAGGAGCCCCCACCTACATGTATGAGTTTCAGTATCGCC CAAGCTTCTCATCGGACAAGAAACCCAAGACGGTGATCGGGGACCACGGGGATGAGATCT TCTCCGTCTTTGGTTTTCCACTGTTAAAAGGCGATGCCCCAGAAGAGGAGGTCAGTCTCA GCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGCAGTGGGAACCCCAATGGGGAGG GGCTGCCCCATTGGCCGATGTACGACCAGGAAGAAGGGTACCTTCAGATCGGCGTCAACA CCCAGGCAGCCAAGAGGCTGAAAGGTGAAGAAGTGGCCTTCTGGAACGATCTCCTGTCCA AGGAGGCAGCAAAGAAGCCACCCAAGATAAAGCATGCTGAGCTGTGAAGGGGAGGCTCGG CTGACCTTGAGGGCTTGTGGGACCGCAGGCAGGAGCAGTCTACCGAAGGCGTTGATGGGC CAGGAGGTATCTTCTTGTGGAGGCTGGGGAATTAGCGGGTGGGAGTGGCGGAGATCAGGG AGGGGGAATTTCTGTAGCTGCGGCCTCAATTTTAGAAATAAATGTTCTTTTGGAGACCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTGGTCCTGACCTCCCTCGCCTCTTCTGCAACTTGGGCTCCTGAATCAGAGACCTGCA GGCATAGGAGCTGCCCTCCTTCCAAGATGTGGCTTCTCCCGCTGGTCCTGACCTCCCTCG CCTCTTCTGCAACTTGGGCAGGGCAGCCAGCCTCGCCGCCTGTTGTGGACACTGCCCAGG GCCGAGTCCTGGGGAAGTACGTCAGCTTAGAAGGCCTGGCACAGCCGGTGGCCGTCTTCC TGGGAGTCCCTTTTGCCAAGCCCCCTCTCGGATCCTTGAGGTTTGCTCCGCCGCAGCCTG CAGAACCATGGAGCTTCGTGAAGAACACCACCTCCTACCCTCCCATGTGCTGCCAGGACC CAGTAGCGGGGCAGATGACCTCAGATCTATTTACCAACAGAAAGGAGAGGCTCATTCCGG AGTTTTCTGAAGACTGTCTCTACCTAAATATTTACACCCCTGCTGACCTGACAAAGAGGG GCAGACTGCCGGTGATGGTGTGGATCCACGGAGGAGGTCTGGTGGTGGGCGGGGCTTCCA CCTATGATGGACTGGCCCTCGCTGCGCATGAAAACGTGGTGGTGGTGGCCATCCAGTACC GCCTGGGCATCTGGGGATTCTTCAGCACAGGGGACGAACACAGCCGGGGCAACTGGGGTC ACTTGGACCAGGTGGCCGCACTGCACTGGGTCCAGGAGAACATCGCCAACTTTGGAGGCG ACCCAGGCTCTGTGACCATCTTTGGAGAGTCAGCAGGAGGGGAAAGTGTCTCTGTTCTGG TGTTGTCTCCCTTGGCCAAGAACCTCTTCCACCGGGCCATCTCTGAGAGTGGCGTGGCCC TCACTGTTGCCCTGGTCAGGAAGGACATGAAGGCTGCAGCTAAGCAAATTGCTGTCCTTG CTGGGTGTAAAACCACCACCTCGGCTGTCTTTGTTCACTGCCTGCGCCAGAAGTCGGAGG ACGAGCTCTTGGACTTAACGCTGAAGATGAAATTTTTAACTCTTGATTTGCATGGAGACC AAAGAGAGAGCCATCCCTTCCTGACCACTGTGGTGGATGGAGTGCTGCTGCCCAAGATGC CTGAAGAGATTCTGGCTGAAAAGGATTTCAACACTGTCCCCTACATCGTGGGAATCAACA AGCAAGAGTTTGGCTGGCTTCTGCCAACGATGATGGGCTTCCCCCTCTCTGAAGGCAAGC TGGACCAGAAGACGGCCACGTCACTCCTGTGGAAGTCCTACCCCATCGCTAACATCCCTG AGGAACTGACTCCAGTGGCCACTGACAAGTATTTGGGGGGGACAGACGACCCCGTCAAAA AGAAAGACCTGTTCCTGGACTTGATGGGGGATGTGGTGTTTGGTGTCCCATCTGTGACGG TGGCCCGTCAACACAGAGATGCAGGAGCCCCCACCTACATGTATGAGTTTCAGTATCGCC CAAGCTTCTCATCGGACAAGAAACCCAAGACGGTGATCGGGGACCACGGGGATGAGATCT TCTCCGTCTTTGGTTTTCCACTGTTAAAAGGCGATGCCCCAGAAGAGGAGGTCAGTCTCA GCAAGATGGTGATGAAATTCTGGGCCAACTTTGCTCGCAGTGGGAACCCCAATGGGGAGG GGCTGCCCCATTGGCCGATGTACGACCAGGAAGAAGGGTACCTTCAGATCGGCGTCAACA CCCAGGCAGCCAAGAGGCTGAAAGGTGAAGAAGTGGCCTTCTGGAACGATCTCCTGTCCA AGGAGGCAGCAAAGAAGCCACCCAAGATAAAGCATGCTGAGCTGTGAAGGGGAGGCTCGG CTGACCTTGAGGGCTTGTGGGACCGCAGGCAGGAGCAGTCTACCGAAGGCGTTGATGGGC CAGGAGGTATCTTCTTGTGGAGGCTGGGGAATTAGCGGGTGGGAGTGGCGGAGATCAGGG AGGGGGAATTTCTGTAGCTGCGGCCTCAATTTTAGAAATAAATGTTCTTTTGGAGACCAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1603-1761, - strand, RNAz p=0.944844 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1603-1761, - strand, RNAz p=0.944844 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 138-348, gnl|bosTau2|chr18 (21353026-21352816) | |
| 138-348, gnl|Hg17|chr16 (54420388-54420178) | |
| 138-348, gnl|Mm7|chr8 (91813880-91813670) | |
| 622-841, gnl|bosTau2|chr18 (28193765-28193984) | |
| 622-841, gnl|canFam2|chr5 (85383594-85383428) | |
| 622-841, gnl|danRer3|chr18 (18579714-18579882) | |
| 622-841, gnl|dasNov1|scaffold_98213 (6764-6939) | |
| 622-841, gnl|echTel1|scaffold_291742 (294-128) | |
| 622-841, gnl|fr1|chrUn (293832948-293832782) | |
| 622-841, gnl|galGal2|chr11 (11486334-11486188) | |
| 622-841, gnl|hg17|chr16 (65531831-65531997) | |
| 622-841, gnl|Hg17|chr16 (65531837-65532056) | |
| 622-841, gnl|loxAfr1|scaffold_45210 (8029-8194) | |
| 622-841, gnl|mm7|chr8 (103591274-103591440) | |
| 622-841, gnl|Mm7|chr8 (103615395-103615614) | |
| 622-841, gnl|monDom2|scaffold_23 (20402702-20402537) | |
| 622-841, gnl|oryCun1|scaffold_175670 (40513-40356) | |
| 622-841, gnl|panTro1|chr18 (59772678-59772845) | |
| 622-841, gnl|rheMac2|chr20 (65233231-65233397) | |
| 622-841, gnl|rn3|chr19 (34926678-34926844) | |
| 622-841, gnl|tetNig1|chr13 (4992442-4992608) | |
| 623-797, gnl|bosTau2|chr18 (24108999-24108826) | |
| 623-797, gnl|Hg17|chr16 (54363779-54363970) | |
| 623-797, gnl|Mm7|chr8 (91629273-91629101) | |
| 883-989, gnl|bosTau2|chr18 (21340364-21340258) | |
| 883-989, gnl|canFam2|chr2 (63171794-63172065) | |
| 883-989, gnl|echTel1|scaffold_83189 (4671-4402) | |
| 883-989, gnl|hg17|chr16 (54324757-54325008) | |
| 883-989, gnl|Hg17|chr16 (54411054-54410948) | |
| 883-989, gnl|loxAfr1|scaffold_386 (20808-21081) | |
| 883-989, gnl|mm7|chr8 (91804000-91803726) | |
| 883-989, gnl|Mm7|chr8 (91803939-91803833) | |
| 883-989, gnl|oryCun1|scaffold_173938 (50456-50191) | |
| 883-989, gnl|panTro1|chr18 (48493147-48492881) | |
| 883-989, gnl|rheMac2|chr20 (54124211-54123944) | |
| 883-989, gnl|rn3|chrUn (8983036-8983272) | |
| 1027-1173, gnl|bosTau2|chr18 (21335799-21335653) | |
| 1027-1173, gnl|canFam2|chr2 (63178286-63178510) | |
| 1027-1173, gnl|dasNov1|scaffold_13287 (8291-8068) | |
| 1027-1173, gnl|echTel1|scaffold_83189 (3236-3068) | |
| 1027-1173, gnl|hg17|chr16 (54331802-54332025) | |
| 1027-1173, gnl|Hg17|chr16 (54404458-54404312) | |
| 1027-1173, gnl|loxAfr1|scaffold_386 (25533-25738) | |
| 1027-1173, gnl|mm7|chr8 (91800208-91799981) | |
| 1027-1173, gnl|Mm7|chr8 (91800194-91800048) | |
| 1027-1173, gnl|oryCun1|scaffold_173938 (45166-44942) | |
| 1027-1173, gnl|panTro1|chr18 (48394960-48395183) | |
| 1027-1173, gnl|rheMac2|chr20 (53994325-53994548) | |
| 1027-1173, gnl|rn3|chrUn (8985917-8986150) | |
| 1253-1401, gnl|bosTau2|chr18 (24098361-24098213) | |
| 1253-1401, gnl|Hg17|chr16 (54377372-54377520) | |
| 1253-1401, gnl|Mm7|chr8 (91618507-91618359) | |
| 1603-1980, gnl|bosTau2|chr18 (24092183-24091824) | |
| 1603-1980, gnl|Hg17|chr16 (54385189-54385570) | |
| 1603-1980, gnl|Mm7|chr8 (91613762-91613381) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 138-348, gnl|bosTau2|chr18 (21353026-21352816) | |
| 138-348, gnl|Hg17|chr16 (54420388-54420178) | |
| 138-348, gnl|Mm7|chr8 (91813880-91813670) | |
| 622-841, gnl|bosTau2|chr18 (28193765-28193984) | |
| 622-841, gnl|canFam2|chr5 (85383594-85383428) | |
| 622-841, gnl|danRer3|chr18 (18579714-18579882) | |
| 622-841, gnl|dasNov1|scaffold_98213 (6764-6939) | |
| 622-841, gnl|echTel1|scaffold_291742 (294-128) | |
| 622-841, gnl|fr1|chrUn (293832948-293832782) | |
| 622-841, gnl|galGal2|chr11 (11486334-11486188) | |
| 622-841, gnl|hg17|chr16 (65531831-65531997) | |
| 622-841, gnl|Hg17|chr16 (65531837-65532056) | |
| 622-841, gnl|loxAfr1|scaffold_45210 (8029-8194) | |
| 622-841, gnl|mm7|chr8 (103591274-103591440) | |
| 622-841, gnl|Mm7|chr8 (103615395-103615614) | |
| 622-841, gnl|monDom2|scaffold_23 (20402702-20402537) | |
| 622-841, gnl|oryCun1|scaffold_175670 (40513-40356) | |
| 622-841, gnl|panTro1|chr18 (59772678-59772845) | |
| 622-841, gnl|rheMac2|chr20 (65233231-65233397) | |
| 622-841, gnl|rn3|chr19 (34926678-34926844) | |
| 622-841, gnl|tetNig1|chr13 (4992442-4992608) | |
| 623-797, gnl|bosTau2|chr18 (24108999-24108826) | |
| 623-797, gnl|Hg17|chr16 (54363779-54363970) | |
| 623-797, gnl|Mm7|chr8 (91629273-91629101) | |
| 883-989, gnl|bosTau2|chr18 (21340364-21340258) | |
| 883-989, gnl|canFam2|chr2 (63171794-63172065) | |
| 883-989, gnl|echTel1|scaffold_83189 (4671-4402) | |
| 883-989, gnl|hg17|chr16 (54324757-54325008) | |
| 883-989, gnl|Hg17|chr16 (54411054-54410948) | |
| 883-989, gnl|loxAfr1|scaffold_386 (20808-21081) | |
| 883-989, gnl|mm7|chr8 (91804000-91803726) | |
| 883-989, gnl|Mm7|chr8 (91803939-91803833) | |
| 883-989, gnl|oryCun1|scaffold_173938 (50456-50191) | |
| 883-989, gnl|panTro1|chr18 (48493147-48492881) | |
| 883-989, gnl|rheMac2|chr20 (54124211-54123944) | |
| 883-989, gnl|rn3|chrUn (8983036-8983272) | |
| 1027-1173, gnl|bosTau2|chr18 (21335799-21335653) | |
| 1027-1173, gnl|canFam2|chr2 (63178286-63178510) | |
| 1027-1173, gnl|dasNov1|scaffold_13287 (8291-8068) | |
| 1027-1173, gnl|echTel1|scaffold_83189 (3236-3068) | |
| 1027-1173, gnl|hg17|chr16 (54331802-54332025) | |
| 1027-1173, gnl|Hg17|chr16 (54404458-54404312) | |
| 1027-1173, gnl|loxAfr1|scaffold_386 (25533-25738) | |
| 1027-1173, gnl|mm7|chr8 (91800208-91799981) | |
| 1027-1173, gnl|Mm7|chr8 (91800194-91800048) | |
| 1027-1173, gnl|oryCun1|scaffold_173938 (45166-44942) | |
| 1027-1173, gnl|panTro1|chr18 (48394960-48395183) | |
| 1027-1173, gnl|rheMac2|chr20 (53994325-53994548) | |
| 1027-1173, gnl|rn3|chrUn (8985917-8986150) | |
| 1253-1401, gnl|bosTau2|chr18 (24098361-24098213) | |
| 1253-1401, gnl|Hg17|chr16 (54377372-54377520) | |
| 1253-1401, gnl|Mm7|chr8 (91618507-91618359) | |
| 1603-1980, gnl|bosTau2|chr18 (24092183-24091824) | |
| 1603-1980, gnl|Hg17|chr16 (54385189-54385570) | |
| 1603-1980, gnl|Mm7|chr8 (91613762-91613381) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cli (1.98655) | |
| cje (1.65235) | |
| cki (0.991408) | |
| jej (0.692452) | |
| cmu (0.55918) | |
| nje (0.49776) | |
| eje (0.494169) | |
| ill (0.351185) | |
| sin (0.349895) | |
| sme (0.305437) | |
| lun (0.300978) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| pty (0.142714) | |
| cov (0.132153) | |
| kid (0.129735) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.98655) | |
| cje (1.65235) | |
| cki (0.991408) | |
| jej (0.692452) | |
| cmu (0.55918) | |
| nje (0.49776) | |
| eje (0.494169) | |
| ill (0.351185) | |
| sin (0.349895) | |
| sme (0.305437) | |
| lun (0.300978) | |
| fli (0.202881) | |
| col (0.195008) | |
| sto (0.179824) | |
| ton (0.1755) | |
| pty (0.142714) | |
| cov (0.132153) | |
| kid (0.129735) |