Ss1.1-Liv1-LVRM10154D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGAGTCTTTCGTCGCACCGCGTCTGCCGCCACCGCCGCGCCTCCGCCTCGGCCGCCGC CACAGCTACTTCGCCTCCCTTTCCCTTGGCCGCCCTTGCCAGACCCAGCCTTCCCACGCC GCCGCCTCCCTACGCGCCTCGCCATGCCACTCTACTCCGTTACTGTGAAATGGGGAAAGG AGAAATTTGAAGGTGTGGAACTGAATACTGATGAACCTCCCATGGTGTTCAAGGCTCAGC TTTTTGCATTGACTGGAGTCCAGCCGGCCAGACAGAAAGTTATGGTAAAAGGAGGAACTC TGAAGGATGATGATTGGGGAAACATCAAAATAAAAAATGGAATGACTTTACTAATGATGG GGTCAGCAGATGCGCTTCCTGAGGAACCCTCAGCTAAAACTGTCTTCGTAGAAGACATGA CAGAAGAACAGCTGGCATCTGCTATGGAATTACCATGTGGATTGACAAACCTTGGTAACA CTTGTTACATGAATGCTACAGTTCAGTGTATTCGTTCTGTGCCTGAACTCAAAGATGCCC TTAAAAGGTATGCAGGTGCCTTAAGAGCTTCAGGGGAGATGGCTTCAGCACAGTATATTA CTGCAGCCCTTAGAGATTTGTTTGATTCCATGGATAAAACTTCTTCTAGTATTCCACCTA TTATCCTACTGCAGTTTTTGCACATGGCTTTTCCACAGTTTGCAGAAAAGGGCGAACAAG GACAGTATCTTCAACAGGATGCTAACGAATGTTGGATACAAATGATGCGAGTATTGCAAC AGAAATTGGAAGCCATAGAGGATGATACTGTTAAAGAGACAGATTCTTCATCTGCATCAG CAGTGACGCCTTCTAAAAAGAAAAGTTTAATCGATCAGTTCTTCGGAGTTGAGTTTGAAA CCACCATGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGAGTCTTTCGTCGCACCGCGTCTGCCGCCACCGCCGCGCCTCCGCCTCGGCCGCCGC CACAGCTACTTCGCCTCCCTTTCCCTTGGCCGCCCTTGCCAGACCCAGCCTTCCCACGCC GCCGCCTCCCTACGCGCCTCGCCATGCCACTCTACTCCGTTACTGTGAAATGGGGAAAGG AGAAATTTGAAGGTGTGGAACTGAATACTGATGAACCTCCCATGGTGTTCAAGGCTCAGC TTTTTGCATTGACTGGAGTCCAGCCGGCCAGACAGAAAGTTATGGTAAAAGGAGGAACTC TGAAGGATGATGATTGGGGAAACATCAAAATAAAAAATGGAATGACTTTACTAATGATGG GGTCAGCAGATGCGCTTCCTGAGGAACCCTCAGCTAAAACTGTCTTCGTAGAAGACATGA CAGAAGAACAGCTGGCATCTGCTATGGAATTACCATGTGGATTGACAAACCTTGGTAACA CTTGTTACATGAATGCTACAGTTCAGTGTATTCGTTCTGTGCCTGAACTCAAAGATGCCC TTAAAAGGTATGCAGGTGCCTTAAGAGCTTCAGGGGAGATGGCTTCAGCACAGTATATTA CTGCAGCCCTTAGAGATTTGTTTGATTCCATGGATAAAACTTCTTCTAGTATTCCACCTA TTATCCTACTGCAGTTTTTGCACATGGCTTTTCCACAGTTTGCAGAAAAGGGCGAACAAG GACAGTATCTTCAACAGGATGCTAACGAATGTTGGATACAAATGATGCGAGTATTGCAAC AGAAATTGGAAGCCATAGAGGATGATACTGTTAAAGAGACAGATTCTTCATCTGCATCAG CAGTGACGCCTTCTAAAAAGAAAAGTTTAATCGATCAGTTCTTCGGAGTTGAGTTTGAAA CCACCATGAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 339-443, - strand, RNAz p=0.966332 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 339-443, - strand, RNAz p=0.966332 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 159-306, gnl|bosTau2|chr24 (25531406-25531553) | |
| 159-306, gnl|canFam2|chr7 (70080967-70081144) | |
| 159-306, gnl|danRer3|chrNA (178448794-178448952) | |
| 159-306, gnl|dasNov1|scaffold_214471 (1933-2078) | |
| 159-306, gnl|echTel1|scaffold_285784 (42572-42748) | |
| 159-306, gnl|fr1|chrUn (196717191-196717009) | |
| 159-306, gnl|galGal2|chr2 (101371324-101371151) | |
| 159-306, gnl|hg17|chr18 (153303-153480) | |
| 159-306, gnl|Hg17|chr18 (153307-153454) | |
| 159-306, gnl|loxAfr1|scaffold_34035 (8581-8757) | |
| 159-306, gnl|mm7|chr18 (10231236-10231060) | |
| 159-306, gnl|Mm7|chr18 (10231230-10231083) | |
| 159-306, gnl|monDom2|scaffold_21 (35444420-35444243) | |
| 159-306, gnl|oryCun1|scaffold_194601 (48317-48140) | |
| 159-306, gnl|panTro1|chr17 (12649264-12649087) | |
| 159-306, gnl|rheMac2|chr18 (13909342-13909165) | |
| 159-306, gnl|rn3|chr18 (1324735-1324559) | |
| 159-306, gnl|tetNig1|chr15_random (1301590-1301431) | |
| 159-306, gnl|xenTro1|scaffold_549 (634968-635144) | |
| 339-443, gnl|bosTau2|chr24 (25541325-25541429) | |
| 339-443, gnl|canFam2|chr7 (70097352-70097467) | |
| 339-443, gnl|danRer3|chrNA (178451936-178452051) | |
| 339-443, gnl|dasNov1|scaffold_130702 (532-417) | |
| 339-443, gnl|echTel1|scaffold_285784 (49414-49529) | |
| 339-443, gnl|fr1|chrUn (196716688-196716580) | |
| 339-443, gnl|galGal2|chr2 (101369114-101369003) | |
| 339-443, gnl|hg17|chr18 (168925-169040) | |
| 339-443, gnl|Hg17|chr18 (168933-169037) | |
| 339-443, gnl|loxAfr1|scaffold_27140 (1072-1187) | |
| 339-443, gnl|mm7|chr18 (10224653-10224540) | |
| 339-443, gnl|Mm7|chr18 (10224645-10224541) | |
| 339-443, gnl|monDom2|scaffold_21 (35424328-35424213) | |
| 339-443, gnl|oryCun1|scaffold_194601 (35627-35513) | |
| 339-443, gnl|panTro1|chr17 (12633603-12633488) | |
| 339-443, gnl|rheMac2|chr18 (13893586-13893471) | |
| 339-443, gnl|rn3|chr18 (1318704-1318590) | |
| 339-443, gnl|tetNig1|chr15_random (1301215-1301106) | |
| 339-443, gnl|xenTro1|scaffold_549 (636097-636206) | |
| 605-738, gnl|bosTau2|chr24 (25567670-25567803) | |
| 605-738, gnl|canFam2|chr7 (70107635-70107771) | |
| 605-738, gnl|dasNov1|scaffold_60952 (11694-11558) | |
| 605-738, gnl|echTel1|scaffold_192661 (622-750) | |
| 605-738, gnl|fr1|chrUn (196716065-196715929) | |
| 605-738, gnl|galGal2|chr2 (101364089-101363953) | |
| 605-738, gnl|hg17|chr18 (186636-186772) | |
| 605-738, gnl|Hg17|chr18 (186635-186768) | |
| 605-738, gnl|loxAfr1|scaffold_32843 (4441-4577) | |
| 605-738, gnl|mm7|chr18 (10216635-10216499) | |
| 605-738, gnl|Mm7|chr18 (10216634-10216501) | |
| 605-738, gnl|monDom2|scaffold_21 (35418295-35418159) | |
| 605-738, gnl|oryCun1|scaffold_194601 (17452-17316) | |
| 605-738, gnl|panTro1|chr17 (12616210-12616074) | |
| 605-738, gnl|rheMac2|chr18 (13876023-13875887) | |
| 605-738, gnl|rn3|chr18 (1309775-1309639) | |
| 605-738, gnl|tetNig1|chr15_random (1300774-1300638) | |
| 605-738, gnl|xenTro1|scaffold_549 (638221-638357) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-306, gnl|bosTau2|chr24 (25531406-25531553) | |
| 159-306, gnl|canFam2|chr7 (70080967-70081144) | |
| 159-306, gnl|danRer3|chrNA (178448794-178448952) | |
| 159-306, gnl|dasNov1|scaffold_214471 (1933-2078) | |
| 159-306, gnl|echTel1|scaffold_285784 (42572-42748) | |
| 159-306, gnl|fr1|chrUn (196717191-196717009) | |
| 159-306, gnl|galGal2|chr2 (101371324-101371151) | |
| 159-306, gnl|hg17|chr18 (153303-153480) | |
| 159-306, gnl|Hg17|chr18 (153307-153454) | |
| 159-306, gnl|loxAfr1|scaffold_34035 (8581-8757) | |
| 159-306, gnl|mm7|chr18 (10231236-10231060) | |
| 159-306, gnl|Mm7|chr18 (10231230-10231083) | |
| 159-306, gnl|monDom2|scaffold_21 (35444420-35444243) | |
| 159-306, gnl|oryCun1|scaffold_194601 (48317-48140) | |
| 159-306, gnl|panTro1|chr17 (12649264-12649087) | |
| 159-306, gnl|rheMac2|chr18 (13909342-13909165) | |
| 159-306, gnl|rn3|chr18 (1324735-1324559) | |
| 159-306, gnl|tetNig1|chr15_random (1301590-1301431) | |
| 159-306, gnl|xenTro1|scaffold_549 (634968-635144) | |
| 339-443, gnl|bosTau2|chr24 (25541325-25541429) | |
| 339-443, gnl|canFam2|chr7 (70097352-70097467) | |
| 339-443, gnl|danRer3|chrNA (178451936-178452051) | |
| 339-443, gnl|dasNov1|scaffold_130702 (532-417) | |
| 339-443, gnl|echTel1|scaffold_285784 (49414-49529) | |
| 339-443, gnl|fr1|chrUn (196716688-196716580) | |
| 339-443, gnl|galGal2|chr2 (101369114-101369003) | |
| 339-443, gnl|hg17|chr18 (168925-169040) | |
| 339-443, gnl|Hg17|chr18 (168933-169037) | |
| 339-443, gnl|loxAfr1|scaffold_27140 (1072-1187) | |
| 339-443, gnl|mm7|chr18 (10224653-10224540) | |
| 339-443, gnl|Mm7|chr18 (10224645-10224541) | |
| 339-443, gnl|monDom2|scaffold_21 (35424328-35424213) | |
| 339-443, gnl|oryCun1|scaffold_194601 (35627-35513) | |
| 339-443, gnl|panTro1|chr17 (12633603-12633488) | |
| 339-443, gnl|rheMac2|chr18 (13893586-13893471) | |
| 339-443, gnl|rn3|chr18 (1318704-1318590) | |
| 339-443, gnl|tetNig1|chr15_random (1301215-1301106) | |
| 339-443, gnl|xenTro1|scaffold_549 (636097-636206) | |
| 605-738, gnl|bosTau2|chr24 (25567670-25567803) | |
| 605-738, gnl|canFam2|chr7 (70107635-70107771) | |
| 605-738, gnl|dasNov1|scaffold_60952 (11694-11558) | |
| 605-738, gnl|echTel1|scaffold_192661 (622-750) | |
| 605-738, gnl|fr1|chrUn (196716065-196715929) | |
| 605-738, gnl|galGal2|chr2 (101364089-101363953) | |
| 605-738, gnl|hg17|chr18 (186636-186772) | |
| 605-738, gnl|Hg17|chr18 (186635-186768) | |
| 605-738, gnl|loxAfr1|scaffold_32843 (4441-4577) | |
| 605-738, gnl|mm7|chr18 (10216635-10216499) | |
| 605-738, gnl|Mm7|chr18 (10216634-10216501) | |
| 605-738, gnl|monDom2|scaffold_21 (35418295-35418159) | |
| 605-738, gnl|oryCun1|scaffold_194601 (17452-17316) | |
| 605-738, gnl|panTro1|chr17 (12616210-12616074) | |
| 605-738, gnl|rheMac2|chr18 (13876023-13875887) | |
| 605-738, gnl|rn3|chr18 (1309775-1309639) | |
| 605-738, gnl|tetNig1|chr15_random (1300774-1300638) | |
| 605-738, gnl|xenTro1|scaffold_549 (638221-638357) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| clu (0.119646) |