Ss1.1-Liv1-LVRM10154F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTGCGCGGAGGACACAGCTCCAGAGCCGGGCTCCCGGGTAGCCATGGAGCGCCCGGTG AGAGTGAAGGCTTGGGTGGAGGAGAACCGGGCCTCCTTCCTGCCCCCGGTCTGCAACAAG CTCCTGCACCAGAAGCAGCTCAAAATCATGTTCGTGGGAGGCCCCAACACCAGGAAGGAC TACCACATCGAGGAGGGCGAGGAGGTGTTTTACCAGCTGGAGGGCGACATGCTTCTCCGG GTCCTGGAGCGAGGCGAACACCGGGATGTGGTCATTCGGCAGGGCGAGATCTTCCTCCTG CCCGCTGGCGTCCCCCACTCTCCACAGAGGTTTGCCAACACCGTGGGGCTGGTGATTGAG CGGAGGCGGCTGAAAACCGAGCTAGATGGGCTCAGGTACTACATCGGGGACACTACGGAT GTCCTGTTTGAGAAGTGGTTCTACTGCGAGGACCTCGGCACACAGTTGGCCCCCATCATC CAAGAGTTCTTCAGCTCTGAGCAGCACAGAACAGGAAAACCCAACCCTGACCAGCTGCTC AAGGAACCGCCATTCCCCCTGAGCACACGGTCCGTCATGGAGCCCATGTCCCTGGAGGCC TGGCTGGCTGGCCACCGCAAGGAACTGCAGGCGGGCACACCACTCAGCCTGTTTGGGGAC ACCTATGAGACCCAGGTAATCGTCCATGGACAAGGCAGCAGCAAAGGCCCGAGACAGGAT GTGGATGTGTGGCTGTGGCAGCTGGAGGGCTCCTCAGTGGTGACAATGGAAGGAGAGCAC CTGAGCCTGACCCCCGGTGACAGCCTCCTGGTGCCAGCCGGGACTGCGTATGGCTGGGAG CGAGGGCAAGGTTCTGCTGCACTGTCTGTGACCCAGGACCCCACCCGCAAAAAGCCCCTG GGGTGATCCTCGCACTGTGGGCCAAAGCAGCCACAGGGCTCAGCACTTGCCTGTGCCCAG AAGGTTCTTCATAAAGGCTTCCTGGTGGACCAGCGCCTGCCGGTCTGCACACACACAGGC TGTGGTCCATGGCAGACACCGAATGTTCCCGTGACTGTGTATATGTTGGGGGAGGGGTGT CTGGGGCACTGGTGACCATGGACGTGTGGGGGACCTGTTATGAGGTACCCCCCACTTGCA GAGAAGCACTCATGCTGTGTGGCCCCTCCATGCGTGCCCCTGTGTCTGTCCTGGGGGCAC AGATGAGGTCATCCCTCTGCCTCTCTTTCTCACTTATTCAAGTAACTTTAAAAAAAAAAA ATAGCACCTATCAAGGTTTTTCTCCTTAATAACAGAAGTGAAAATGTAGAAATACATGAA AACACAAAATCCCCCAGCCAGGGTTAACCAGTTAACCACAGCCCTGGGCCAGAGCCTGAC CACTGGGGGAAGAGAAGTCTTGCTTTAGAAATTGGACAGTTGCTTCTTCTGTAATCTCCA GTTTGTCTTTTTCAATACTAATAAACTTCCTTTTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTGCGCGGAGGACACAGCTCCAGAGCCGGGCTCCCGGGTAGCCATGGAGCGCCCGGTG AGAGTGAAGGCTTGGGTGGAGGAGAACCGGGCCTCCTTCCTGCCCCCGGTCTGCAACAAG CTCCTGCACCAGAAGCAGCTCAAAATCATGTTCGTGGGAGGCCCCAACACCAGGAAGGAC TACCACATCGAGGAGGGCGAGGAGGTGTTTTACCAGCTGGAGGGCGACATGCTTCTCCGG GTCCTGGAGCGAGGCGAACACCGGGATGTGGTCATTCGGCAGGGCGAGATCTTCCTCCTG CCCGCTGGCGTCCCCCACTCTCCACAGAGGTTTGCCAACACCGTGGGGCTGGTGATTGAG CGGAGGCGGCTGAAAACCGAGCTAGATGGGCTCAGGTACTACATCGGGGACACTACGGAT GTCCTGTTTGAGAAGTGGTTCTACTGCGAGGACCTCGGCACACAGTTGGCCCCCATCATC CAAGAGTTCTTCAGCTCTGAGCAGCACAGAACAGGAAAACCCAACCCTGACCAGCTGCTC AAGGAACCGCCATTCCCCCTGAGCACACGGTCCGTCATGGAGCCCATGTCCCTGGAGGCC TGGCTGGCTGGCCACCGCAAGGAACTGCAGGCGGGCACACCACTCAGCCTGTTTGGGGAC ACCTATGAGACCCAGGTAATCGTCCATGGACAAGGCAGCAGCAAAGGCCCGAGACAGGAT GTGGATGTGTGGCTGTGGCAGCTGGAGGGCTCCTCAGTGGTGACAATGGAAGGAGAGCAC CTGAGCCTGACCCCCGGTGACAGCCTCCTGGTGCCAGCCGGGACTGCGTATGGCTGGGAG CGAGGGCAAGGTTCTGCTGCACTGTCTGTGACCCAGGACCCCACCCGCAAAAAGCCCCTG GGGTGATCCTCGCACTGTGGGCCAAAGCAGCCACAGGGCTCAGCACTTGCCTGTGCCCAG AAGGTTCTTCATAAAGGCTTCCTGGTGGACCAGCGCCTGCCGGTCTGCACACACACAGGC TGTGGTCCATGGCAGACACCGAATGTTCCCGTGACTGTGTATATGTTGGGGGAGGGGTGT CTGGGGCACTGGTGACCATGGACGTGTGGGGGACCTGTTATGAGGTACCCCCCACTTGCA GAGAAGCACTCATGCTGTGTGGCCCCTCCATGCGTGCCCCTGTGTCTGTCCTGGGGGCAC AGATGAGGTCATCCCTCTGCCTCTCTTTCTCACTTATTCAAGTAACTTTAAAAAAAAAAA ATAGCACCTATCAAGGTTTTTCTCCTTAATAACAGAAGTGAAAATGTAGAAATACATGAA AACACAAAATCCCCCAGCCAGGGTTAACCAGTTAACCACAGCCCTGGGCCAGAGCCTGAC CACTGGGGGAAGAGAAGTCTTGCTTTAGAAATTGGACAGTTGCTTCTTCTGTAATCTCCA GTTTGTCTTTTTCAATACTAATAAACTTCCTTTTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 2-126, gnl|bosTau2|chr11 (22100969-22100845) | |
| 2-126, gnl|Hg17|chr2 (42931369-42931247) | |
| 287-398, gnl|bosTau2|chr11 (22093002-22092891) | |
| 287-398, gnl|Hg17|chr2 (42922213-42922102) | |
| 287-398, gnl|Mm7|chr17 (82133027-82132916) | |
| 529-680, gnl|bosTau2|chr11 (22089500-22089349) | |
| 529-680, gnl|canFam2|chr10 (48497810-48497963) | |
| 529-680, gnl|dasNov1|scaffold_191715 (1301-1453) | |
| 529-680, gnl|echTel1|scaffold_228065 (4949-4796) | |
| 529-680, gnl|hg17|chr2 (42908495-42908648) | |
| 529-680, gnl|Hg17|chr2 (42908650-42908499) | |
| 529-680, gnl|mm7|chr17 (82129218-82129370) | |
| 529-680, gnl|Mm7|chr17 (82129372-82129221) | |
| 529-680, gnl|oryCun1|scaffold_197385 (9589-9742) | |
| 529-680, gnl|panTro1|chr12 (44547632-44547785) | |
| 529-680, gnl|rheMac2|chr13 (42888115-42888268) | |
| 529-680, gnl|rn3|chr6 (7199587-7199743) | |
| 529-680, gnl|tetNig1|chrUn_random (139396659-139396812) | |
| 828-934, gnl|bosTau2|chr11 (22087249-22087138) | |
| 828-934, gnl|Hg17|chr2 (42906306-42906200) | |
| 828-934, gnl|Mm7|chr17 (82126168-82126062) | |
| 941-1301, gnl|bosTau2|chr11 (22086886-22086542) | |
| 941-1301, gnl|Hg17|chr2 (42905930-42905350) | |
| 941-1301, gnl|Mm7|chr17 (82125842-82125507) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-126, gnl|bosTau2|chr11 (22100969-22100845) | |
| 2-126, gnl|Hg17|chr2 (42931369-42931247) | |
| 287-398, gnl|bosTau2|chr11 (22093002-22092891) | |
| 287-398, gnl|Hg17|chr2 (42922213-42922102) | |
| 287-398, gnl|Mm7|chr17 (82133027-82132916) | |
| 529-680, gnl|bosTau2|chr11 (22089500-22089349) | |
| 529-680, gnl|canFam2|chr10 (48497810-48497963) | |
| 529-680, gnl|dasNov1|scaffold_191715 (1301-1453) | |
| 529-680, gnl|echTel1|scaffold_228065 (4949-4796) | |
| 529-680, gnl|hg17|chr2 (42908495-42908648) | |
| 529-680, gnl|Hg17|chr2 (42908650-42908499) | |
| 529-680, gnl|mm7|chr17 (82129218-82129370) | |
| 529-680, gnl|Mm7|chr17 (82129372-82129221) | |
| 529-680, gnl|oryCun1|scaffold_197385 (9589-9742) | |
| 529-680, gnl|panTro1|chr12 (44547632-44547785) | |
| 529-680, gnl|rheMac2|chr13 (42888115-42888268) | |
| 529-680, gnl|rn3|chr6 (7199587-7199743) | |
| 529-680, gnl|tetNig1|chrUn_random (139396659-139396812) | |
| 828-934, gnl|bosTau2|chr11 (22087249-22087138) | |
| 828-934, gnl|Hg17|chr2 (42906306-42906200) | |
| 828-934, gnl|Mm7|chr17 (82126168-82126062) | |
| 941-1301, gnl|bosTau2|chr11 (22086886-22086542) | |
| 941-1301, gnl|Hg17|chr2 (42905930-42905350) | |
| 941-1301, gnl|Mm7|chr17 (82125842-82125507) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| fli (0.811524) | |
| cli (0.611247) | |
| nje (0.49776) | |
| cty (0.31224) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| eli (0.151814) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.811524) | |
| cli (0.611247) | |
| nje (0.49776) | |
| cty (0.31224) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| eli (0.151814) | |
| clu (0.119646) | |
| jej (0.0989218) |