Non-Coding RNA Search

Ss1.1-Liv1-LVRM10155A01.5

Sequence:


               
               AGTTTTCCAGTAAGTACAAATGGATCCTAGGTGAGGAACCTGTGGAGAAACGAAGGAAGC
TCCAGAATGAGATGACAACACCTCCGCTAGATTATTCCATGCCGGGCCCTTACAGGAGGG
TAGAGGCAGCAGTTGCCTACCCAGAAGGGGAGAACAGCCATGATAAATCCAGTTCTGAGA
GAAGCACACCACCGTACCTTTCCCCAGAATACCCAGAAGCTGTTAAGAGTACCAGTCAGA
GCAGGGAGGTTTCAGTTCTGTATGCAGGGGCCCAAGACCCACACCAGGGGTCCCTGCTCC
CTGAAGAATTAGAAGATCAGATGCCAAGATTGGTAGCAGAAGAATCTAACAGAGGCAGCA
CACACATAAACAAGGAAGAAGTAAGCAAGGGACCTTTCGTAGCTGTTGTCGGTGTTGCAA
AAGGTGTTAGAGATTCAGGAGCTCCCATTCAGCTGATCCCTTTTAACAGAGAGGAGCTTG
CTGAGCGACGAAAAGCAGTTGAATCCTGGAACCCCCCGGCGCCTTACTCTGCTGTGGCCT
CTGCTGCAACCCCTGCTGCAGCCGCCGGGGAGAAAGGAAAAGGCTGTGAGGAGAGTGGAG
GACGTAATACACCAAAGATGAAGAACCAAAGAGAGCTGGAAGAACTGAAGAGAACCACAG
AGAAGTTGGAACGTGTTTTGGCAGAAAGGAATATGTTCCAGCAAAAGGTGGAGGAGCTGG
AACAGGAGAGGAATCACTGGCATTCTGAATTCAAGAAAGTCCAACACGAATTGGTGACCT
ATAGTACCCAGGAGACAGAAGGCTTGTATTGGAGCAAGAAACACATGGGTTATCGCCAGG
CTGAATTCCAGATTCTGAAAGCTGAGCTGGAAAGAACCAAAGAGGAAAAGCAGGAGCTAA
AGGAGAAACTGAAGGAGACAGAGACACACCTGGAAGTGCTGCAGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTTCCAGTAAGTACAAATGGATCCTAGGTGAGGAACCTGTGGAGAAACGAAGGAAGC
TCCAGAATGAGATGACAACACCTCCGCTAGATTATTCCATGCCGGGCCCTTACAGGAGGG
TAGAGGCAGCAGTTGCCTACCCAGAAGGGGAGAACAGCCATGATAAATCCAGTTCTGAGA
GAAGCACACCACCGTACCTTTCCCCAGAATACCCAGAAGCTGTTAAGAGTACCAGTCAGA
GCAGGGAGGTTTCAGTTCTGTATGCAGGGGCCCAAGACCCACACCAGGGGTCCCTGCTCC
CTGAAGAATTAGAAGATCAGATGCCAAGATTGGTAGCAGAAGAATCTAACAGAGGCAGCA
CACACATAAACAAGGAAGAAGTAAGCAAGGGACCTTTCGTAGCTGTTGTCGGTGTTGCAA
AAGGTGTTAGAGATTCAGGAGCTCCCATTCAGCTGATCCCTTTTAACAGAGAGGAGCTTG
CTGAGCGACGAAAAGCAGTTGAATCCTGGAACCCCCCGGCGCCTTACTCTGCTGTGGCCT
CTGCTGCAACCCCTGCTGCAGCCGCCGGGGAGAAAGGAAAAGGCTGTGAGGAGAGTGGAG
GACGTAATACACCAAAGATGAAGAACCAAAGAGAGCTGGAAGAACTGAAGAGAACCACAG
AGAAGTTGGAACGTGTTTTGGCAGAAAGGAATATGTTCCAGCAAAAGGTGGAGGAGCTGG
AACAGGAGAGGAATCACTGGCATTCTGAATTCAAGAAAGTCCAACACGAATTGGTGACCT
ATAGTACCCAGGAGACAGAAGGCTTGTATTGGAGCAAGAAACACATGGGTTATCGCCAGG
CTGAATTCCAGATTCTGAAAGCTGAGCTGGAAAGAACCAAAGAGGAAAAGCAGGAGCTAA
AGGAGAAACTGAAGGAGACAGAGACACACCTGGAAGTGCTGCAGAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9HAI7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9HAI7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               45-164, - strand, RNAz p=0.759152
               

               
               245-404, + strand, RNAz p=0.640285

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-164, - strand, RNAz p=0.759152
               

               
               245-404, + strand, RNAz p=0.640285

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-709, gnl|bosTau2|chrX (16960756-16960055)
               

               
               5-709, gnl|Hg17|chrX (105992584-105991888)
               

               
               5-709, gnl|Mm7|chrX (134543863-134543177)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-709, gnl|bosTau2|chrX (16960756-16960055)
               

               
               5-709, gnl|Hg17|chrX (105992584-105991888)
               

               
               5-709, gnl|Mm7|chrX (134543863-134543177)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               cty (0.10408)

	45-164, - strand, RNAz p=0.759152
	245-404, + strand, RNAz p=0.640285

	5-709, gnl\|bosTau2\|chrX (16960756-16960055)
	5-709, gnl\|Hg17\|chrX (105992584-105991888)
	5-709, gnl\|Mm7\|chrX (134543863-134543177)