Non-Coding RNA Search

Ss1.1-Liv1-LVRM10156E04.5

Sequence:


               
               CAGTATTTCCTTCTCACTTGTTACATTTCTAATCCTTTGGAGAACAGAGAAGTAAAATTC
AAAGGCAGTTAAATCAGAAGTGTTTGAAATCTGACATCTACTCCCAAACAAGCATTTCTC
AGGAGGCCCCCATACCATGTGGCTGTACCTGGCTGTCCTCGTGGGCCTGTACTACCTCCT
TCGCTGGTACCGGGAAAGGCAGATGGTTAGCCACCTTGGGGATAAGTATGTCTTCATCAC
GGGCTGTGACTCGGGCTTTGGGAACCTGCTGGCGAGGCAGCTGGATGTGAGGGGCTTGAG
GGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAGA
CAGGCTGGAGACGGTGCTCTTGGACGTGACCAAGACAGAGAGCATTGCTGCGGCCACCCA
GTGGGTGAAGGAGCGTGTCGGGGACAGAGGACTCTGGGGTCTGGTCAACAATGCAGGCAC
TTTTCACCCACTGTGCATCACTGAGTGGCTGAAGACTGAGACCTGGATACATACCCTCAA
AGTGAACCTCATTGGTGTGACAGAGGTGACCTTGAGCATGCTTCCCTTGGTGAAGAAAGC
ACAGGGGAGAATTGTCAATGTCTCCAGCATTCTGGGAAGAGTTGCTTTCTTTGGAGCAGT
CTACTCTAGCTCCAAGCATGGAGTGGAAGCCTTTTCAGATGTCCTGAGATGTGAGCTTCA
GCATTTTGGGGTGAAAGTCAGCATAGTTGAACCTGGTTACTTCAGAACAGGAATGACAGA
TGTGCAGAAGTCCTCAGAGGCAATGAAGCAAGTCTGGAAAGAAGTCCCTGCTCATATTAA
GGACACCTATGGACAGAAGTTTTTTGATGCCTATCACGATGTTATGAAACAAGGGCTGTC
TAGTTGTAGCACAAACCTGAACCTGGTCACGGACTGCATGGAACACGCTCTGACATCTGT
GCATCCCCGCACTCGGTACTCAGCTGGCTGGGATGCTCAATTTTTCTTCATCCCTCTGTC
TTATTTACCTACATCACTGGCAGACTACATACTGACTAGATCTTGGCCCAAACCAGTGCA
GGCAGTCTAAAGAAAATTATTTTGGTGGCTCTTCAAACGAAGAAGACAAAAATCTGAAAT
TGTTAGTGTCTCAGTAATCTTTATGTCTAATCCATACTTTTTATAACAACAAGCTTTCTT
GCCTAAACTCACTTATCTGGCACTATCTGAGAACCAATATCTTTATATTCCGTATATTAT
CCAAAGCTTACTCCTTTAGGTGATGAAAGGTTACTATTTTAAACCATTTTTTGATGACAG
TTTATTTCCAAAATTCATCAGTCTTTCTTGCTTGCCCTATTAAACAGAGTAGACAGAAAA
CAACTGAACTTTTTTGGATGCTCTTTCTTTATGTAAATAAATAGCTGTTCTGTGCTGTGA
TAAACTACTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTATTTCCTTCTCACTTGTTACATTTCTAATCCTTTGGAGAACAGAGAAGTAAAATTC
AAAGGCAGTTAAATCAGAAGTGTTTGAAATCTGACATCTACTCCCAAACAAGCATTTCTC
AGGAGGCCCCCATACCATGTGGCTGTACCTGGCTGTCCTCGTGGGCCTGTACTACCTCCT
TCGCTGGTACCGGGAAAGGCAGATGGTTAGCCACCTTGGGGATAAGTATGTCTTCATCAC
GGGCTGTGACTCGGGCTTTGGGAACCTGCTGGCGAGGCAGCTGGATGTGAGGGGCTTGAG
GGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAGA
CAGGCTGGAGACGGTGCTCTTGGACGTGACCAAGACAGAGAGCATTGCTGCGGCCACCCA
GTGGGTGAAGGAGCGTGTCGGGGACAGAGGACTCTGGGGTCTGGTCAACAATGCAGGCAC
TTTTCACCCACTGTGCATCACTGAGTGGCTGAAGACTGAGACCTGGATACATACCCTCAA
AGTGAACCTCATTGGTGTGACAGAGGTGACCTTGAGCATGCTTCCCTTGGTGAAGAAAGC
ACAGGGGAGAATTGTCAATGTCTCCAGCATTCTGGGAAGAGTTGCTTTCTTTGGAGCAGT
CTACTCTAGCTCCAAGCATGGAGTGGAAGCCTTTTCAGATGTCCTGAGATGTGAGCTTCA
GCATTTTGGGGTGAAAGTCAGCATAGTTGAACCTGGTTACTTCAGAACAGGAATGACAGA
TGTGCAGAAGTCCTCAGAGGCAATGAAGCAAGTCTGGAAAGAAGTCCCTGCTCATATTAA
GGACACCTATGGACAGAAGTTTTTTGATGCCTATCACGATGTTATGAAACAAGGGCTGTC
TAGTTGTAGCACAAACCTGAACCTGGTCACGGACTGCATGGAACACGCTCTGACATCTGT
GCATCCCCGCACTCGGTACTCAGCTGGCTGGGATGCTCAATTTTTCTTCATCCCTCTGTC
TTATTTACCTACATCACTGGCAGACTACATACTGACTAGATCTTGGCCCAAACCAGTGCA
GGCAGTCTAAAGAAAATTATTTTGGTGGCTCTTCAAACGAAGAAGACAAAAATCTGAAAT
TGTTAGTGTCTCAGTAATCTTTATGTCTAATCCATACTTTTTATAACAACAAGCTTTCTT
GCCTAAACTCACTTATCTGGCACTATCTGAGAACCAATATCTTTATATTCCGTATATTAT
CCAAAGCTTACTCCTTTAGGTGATGAAAGGTTACTATTTTAAACCATTTTTTGATGACAG
TTTATTTCCAAAATTCATCAGTCTTTCTTGCTTGCCCTATTAAACAGAGTAGACAGAAAA
CAACTGAACTTTTTTGGATGCTCTTTCTTTATGTAAATAAATAGCTGTTCTGTGCTGTGA
TAAACTACTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18088774|gb|AAH20710.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088774|gb|AAH20710.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               121-450, gnl|bosTau2|chr5 (32987871-32987542)
               

               
               121-450, gnl|Hg17|chr12 (55453882-55454217)
               

               
               121-450, gnl|Mm7|chr10 (127499414-127499085)
               


               
               711-872, gnl|bosTau2|chr5 (32980897-32980736)
               

               
               711-872, gnl|Hg17|chr12 (55464906-55465067)
               

               
               711-872, gnl|Mm7|chr10 (127495145-127494984)
               


               
               873-1452, gnl|bosTau2|chr5 (32977257-32976694)
               

               
               873-1452, gnl|Hg17|chr12 (55467176-55467744)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               121-450, gnl|bosTau2|chr5 (32987871-32987542)
               

               
               121-450, gnl|Hg17|chr12 (55453882-55454217)
               

               
               121-450, gnl|Mm7|chr10 (127499414-127499085)
               


               
               711-872, gnl|bosTau2|chr5 (32980897-32980736)
               

               
               711-872, gnl|Hg17|chr12 (55464906-55465067)
               

               
               711-872, gnl|Mm7|chr10 (127495145-127494984)
               


               
               873-1452, gnl|bosTau2|chr5 (32977257-32976694)
               

               
               873-1452, gnl|Hg17|chr12 (55467176-55467744)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               lun (2.10685)
               

               
               mga (0.32041)
               

               
               cli (0.305623)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.10685)
               

               
               mga (0.32041)
               

               
               cli (0.305623)
               

               
               mgm (0.180343)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               spc (0.113366)

	121-450, gnl\|bosTau2\|chr5 (32987871-32987542)
	121-450, gnl\|Hg17\|chr12 (55453882-55454217)
	121-450, gnl\|Mm7\|chr10 (127499414-127499085)

	711-872, gnl\|bosTau2\|chr5 (32980897-32980736)
	711-872, gnl\|Hg17\|chr12 (55464906-55465067)
	711-872, gnl\|Mm7\|chr10 (127495145-127494984)

	873-1452, gnl\|bosTau2\|chr5 (32977257-32976694)
	873-1452, gnl\|Hg17\|chr12 (55467176-55467744)

	lun (2.10685)
	mga (0.32041)
	cli (0.305623)
	mgm (0.180343)
	fhi (0.169578)
	fco (0.157208)
	hyp (0.142837)
	spc (0.113366)