Ss1.1-Liv1-LVRM1A010091.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTCCTCCTGTCCCCCCCACCTTGCCACGTGCCATGAGGAGTGGGGTGACTGGCTTGC GGGGGTGAGGGGGACAGACCAGGAGTCACCTTCTCTGTGAAGGACAGAGACAGTCCTGCC CCCTGCCCCCACCACAATTCGCCTGAGTTCCACCTCAGGATAGAAGCGCCGGGACGCTCA GATGCACGGGCTCAGAGCCCTCAGCTGGACTGGCCCTCGCTGCCGCGCTGCCGCAGCCTC CAGCACCACCTGTCCCACTTCTTCTGCTTCTTGCCCCTCCTTAGCCCTGGGGCCTGGGCT GCCCGAGAACACGACTCAGCCCGCCATACCCTTAACAGCCCAGGACCCAGCATGGCGAGG GACTTCCAGGACATCCAGCAGCTGGACTCCGAGGAGAACGACCACCAGCTGGGCAGAGGT GAGGGCCCAGGCGCTGGGTACCGTCCCAAGAGAGAAGACCCGGTCTGGAAAGGCACACCT CTTCCCCAGCCTCTTGTGCTGCAACGTCTCTGCTCCAAGCTCCGCCTCAGTCTGCTTGTC CTGGGCTTCAACGTCCTGATGCTGGTGGCTGTCTGTGTGGTGGGGTCCCAAAGAACACAG CTGCAAATGGAACTGCAGACCCTAAAGGAAACGTTCAGCAACTTCTCCTCCAGCCTCCTG ATGGAGATGCTGACGCTAAGCACCCGTGGAGGCAGCGCAGGTGACAAGGTGACATCTCTG GAAGCCAAGATGGAAAAACAGCAGCAAGACCTGAAGGCAGATCATGCCACCTTGCGCCTT CATCTGAAGCACTTCCCGAGGGATGTGCGCACGCTGACTTGTCGGTTGGTGTTCCTCCAG AGCAACGGCACGGAATGCTGCCCGGTTAACTGGGTGGACTATGAAGGCAGCTGCTACTGG TTCTCTCGCTCTGGGAAGGCCTGGGCCGAGGCTGAGAAGTACTGCCAGCTAGAGAACGCC CACCTCGTGGTCATCAACTCCAGAGAGGAGCAGAAATTCATTGCACAACGCACGAACCCC TTTCAAACGTGGATAGGTCTCACCGACAGTGACGGCTCCTGGAAATGGGTGGACGGCACA GACTATGGGAACAGCTACAAGAACTGGGGTGCCCTGCAACCAGACGACTGGCAGGGGCAC GAGCTGGGGGGCAGCGAGGACTGTGTCGAGATCCAGGGGGACGGCCGCTGGAATGATGAT TTCTGCCAGCAAGTGAAACGCTGGGTGTGTGAGATGAAGCAGAATATTACCATGTAGACC CCCGACCTCCAGCAGACCCCTGCCTCCAGCCCCCCCACCACCGGGGGGGGGGGTTGCATT TTGAAGAAAAGGAGGAGAAGAGAGTCGTCAGAGGCGGGGGGAGGGGCTGAGGAAAGCTAG CAGGGGCTGGTTGAAGAATCTCGGACCCTGGGAAGCCTGTGAGCCTGCCTCCTTCTGAAA TTCACTGTAATTATGATCATTTTCGGCCTCCTCAATGGCGTAGGAAGAGAACAAATACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTCCTCCTGTCCCCCCCACCTTGCCACGTGCCATGAGGAGTGGGGTGACTGGCTTGC GGGGGTGAGGGGGACAGACCAGGAGTCACCTTCTCTGTGAAGGACAGAGACAGTCCTGCC CCCTGCCCCCACCACAATTCGCCTGAGTTCCACCTCAGGATAGAAGCGCCGGGACGCTCA GATGCACGGGCTCAGAGCCCTCAGCTGGACTGGCCCTCGCTGCCGCGCTGCCGCAGCCTC CAGCACCACCTGTCCCACTTCTTCTGCTTCTTGCCCCTCCTTAGCCCTGGGGCCTGGGCT GCCCGAGAACACGACTCAGCCCGCCATACCCTTAACAGCCCAGGACCCAGCATGGCGAGG GACTTCCAGGACATCCAGCAGCTGGACTCCGAGGAGAACGACCACCAGCTGGGCAGAGGT GAGGGCCCAGGCGCTGGGTACCGTCCCAAGAGAGAAGACCCGGTCTGGAAAGGCACACCT CTTCCCCAGCCTCTTGTGCTGCAACGTCTCTGCTCCAAGCTCCGCCTCAGTCTGCTTGTC CTGGGCTTCAACGTCCTGATGCTGGTGGCTGTCTGTGTGGTGGGGTCCCAAAGAACACAG CTGCAAATGGAACTGCAGACCCTAAAGGAAACGTTCAGCAACTTCTCCTCCAGCCTCCTG ATGGAGATGCTGACGCTAAGCACCCGTGGAGGCAGCGCAGGTGACAAGGTGACATCTCTG GAAGCCAAGATGGAAAAACAGCAGCAAGACCTGAAGGCAGATCATGCCACCTTGCGCCTT CATCTGAAGCACTTCCCGAGGGATGTGCGCACGCTGACTTGTCGGTTGGTGTTCCTCCAG AGCAACGGCACGGAATGCTGCCCGGTTAACTGGGTGGACTATGAAGGCAGCTGCTACTGG TTCTCTCGCTCTGGGAAGGCCTGGGCCGAGGCTGAGAAGTACTGCCAGCTAGAGAACGCC CACCTCGTGGTCATCAACTCCAGAGAGGAGCAGAAATTCATTGCACAACGCACGAACCCC TTTCAAACGTGGATAGGTCTCACCGACAGTGACGGCTCCTGGAAATGGGTGGACGGCACA GACTATGGGAACAGCTACAAGAACTGGGGTGCCCTGCAACCAGACGACTGGCAGGGGCAC GAGCTGGGGGGCAGCGAGGACTGTGTCGAGATCCAGGGGGACGGCCGCTGGAATGATGAT TTCTGCCAGCAAGTGAAACGCTGGGTGTGTGAGATGAAGCAGAATATTACCATGTAGACC CCCGACCTCCAGCAGACCCCTGCCTCCAGCCCCCCCACCACCGGGGGGGGGGGTTGCATT TTGAAGAAAAGGAGGAGAAGAGAGTCGTCAGAGGCGGGGGGAGGGGCTGAGGAAAGCTAG CAGGGGCTGGTTGAAGAATCTCGGACCCTGGGAAGCCTGTGAGCCTGCCTCCTTCTGAAA TTCACTGTAATTATGATCATTTTCGGCCTCCTCAATGGCGTAGGAAGAGAACAAATACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 48-158, - strand, RNAz p=0.838351 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 48-158, - strand, RNAz p=0.838351 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-158, gnl|bosTau2|chr19 (20409439-20409279) | |
| 2-158, gnl|Hg17|chr17 (6959035-6958881) | |
| 2-158, gnl|Mm7|chr11 (70173920-70174145) | |
| 471-593, gnl|bosTau2|chr19 (20407226-20407104) | |
| 471-593, gnl|canFam2|chr5 (35114592-35114784) | |
| 471-593, gnl|dasNov1|scaffold_139789 (1347-1508) | |
| 471-593, gnl|echTel1|scaffold_204842 (2185-2018) | |
| 471-593, gnl|hg17|chr17 (6952760-6952944) | |
| 471-593, gnl|Hg17|chr17 (6952933-6952814) | |
| 471-593, gnl|loxAfr1|scaffold_29116 (26373-26540) | |
| 471-593, gnl|mm7|chr11 (70178550-70178365) | |
| 471-593, gnl|Mm7|chr11 (70178374-70178493) | |
| 471-593, gnl|monDom2|scaffold_66 (4068544-4068728) | |
| 471-593, gnl|panTro1|chr19 (7285274-7285458) | |
| 471-593, gnl|rheMac2|chr16 (6817175-6817359) | |
| 471-593, gnl|rn3|chr10 (56961526-56961346) | |
| 847-993, gnl|bosTau2|chr19 (20405549-20405403) | |
| 847-993, gnl|canFam2|chr5 (35113446-35113583) | |
| 847-993, gnl|dasNov1|scaffold_30233 (18067-18204) | |
| 847-993, gnl|echTel1|scaffold_204842 (4334-4197) | |
| 847-993, gnl|hg17|chr17 (6951038-6951175) | |
| 847-993, gnl|Hg17|chr17 (6951195-6951043) | |
| 847-993, gnl|loxAfr1|scaffold_29116 (24370-24506) | |
| 847-993, gnl|mm7|chr11 (70179954-70179817) | |
| 847-993, gnl|Mm7|chr11 (70179801-70179947) | |
| 847-993, gnl|monDom2|scaffold_66 (4067225-4067362) | |
| 847-993, gnl|oryCun1|scaffold_94127 (3318-3447) | |
| 847-993, gnl|panTro1|chr19 (7283525-7283662) | |
| 847-993, gnl|rheMac2|chr16 (6787174-6787311) | |
| 847-993, gnl|rn3|chr10 (56962932-56962795) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-158, gnl|bosTau2|chr19 (20409439-20409279) | |
| 2-158, gnl|Hg17|chr17 (6959035-6958881) | |
| 2-158, gnl|Mm7|chr11 (70173920-70174145) | |
| 471-593, gnl|bosTau2|chr19 (20407226-20407104) | |
| 471-593, gnl|canFam2|chr5 (35114592-35114784) | |
| 471-593, gnl|dasNov1|scaffold_139789 (1347-1508) | |
| 471-593, gnl|echTel1|scaffold_204842 (2185-2018) | |
| 471-593, gnl|hg17|chr17 (6952760-6952944) | |
| 471-593, gnl|Hg17|chr17 (6952933-6952814) | |
| 471-593, gnl|loxAfr1|scaffold_29116 (26373-26540) | |
| 471-593, gnl|mm7|chr11 (70178550-70178365) | |
| 471-593, gnl|Mm7|chr11 (70178374-70178493) | |
| 471-593, gnl|monDom2|scaffold_66 (4068544-4068728) | |
| 471-593, gnl|panTro1|chr19 (7285274-7285458) | |
| 471-593, gnl|rheMac2|chr16 (6817175-6817359) | |
| 471-593, gnl|rn3|chr10 (56961526-56961346) | |
| 847-993, gnl|bosTau2|chr19 (20405549-20405403) | |
| 847-993, gnl|canFam2|chr5 (35113446-35113583) | |
| 847-993, gnl|dasNov1|scaffold_30233 (18067-18204) | |
| 847-993, gnl|echTel1|scaffold_204842 (4334-4197) | |
| 847-993, gnl|hg17|chr17 (6951038-6951175) | |
| 847-993, gnl|Hg17|chr17 (6951195-6951043) | |
| 847-993, gnl|loxAfr1|scaffold_29116 (24370-24506) | |
| 847-993, gnl|mm7|chr11 (70179954-70179817) | |
| 847-993, gnl|Mm7|chr11 (70179801-70179947) | |
| 847-993, gnl|monDom2|scaffold_66 (4067225-4067362) | |
| 847-993, gnl|oryCun1|scaffold_94127 (3318-3447) | |
| 847-993, gnl|panTro1|chr19 (7283525-7283662) | |
| 847-993, gnl|rheMac2|chr16 (6787174-6787311) | |
| 847-993, gnl|rn3|chr10 (56962932-56962795) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) | |
| cli (0.152812) | |
| pty (0.142714) |