Ss1.1-Liv1-LVRM1A030036.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGAGGCGCTTAGAGTTCAGATGTTCATGCCCTGTTCCTTTGAAAGCTTGTATCTCAG TTCCGAGGAGCATCCTGGGGCCTCCAAGCCTCCGATAAGCTCCTCCAGTATGACATCACG CATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGGAACGCAGGGAGCA GCAGCAGAAGCTGCAGGCGGCCCAGTTCATGCAACAGAGAGTGCCCGTGAGTCCGACACC AGCCATAAACGTCAGCGTGCCTACCACACTCCCCTCCGCCACCCAGGTGCCCATGGAAGT CCTTAAGGTGCAGACCCACCTCGAAAACCCCACCAAGTACCACATACAGCAAGCCCAAAG GCAGCAGGTAAAGCAGTACCTTTCTACCACTTTAGCAAATAAACATGCCAACCAAGTCCT GAGCTTGCCATGTCCAAACCAGCCTGGCGACCATGTCATGCCACCGGTGCCGGGGAGCAG CGCACCCAACAGCCCCATGGCTATGCTTACACTTAACTCCAACTGTGAAAAAGAGGGATT TTATAAGTTTGAAGAACAAAACAGGGCGGAGAGCGAATGCCCAAGTATGAACAAGCATTC ACGAGCGTCGTGCATGCAGATGGATGATGTAATCGATGACATCATTAGCCTAGAATCAAG TTATAATGAAGAAATCCTGGGCTTGATGGATCCTGCCTTGCAAATGGCGAATACGTTACC CGTCTCTGGAAACTTGATTGATCTTTATGGAAACCAAGGCCTGCCACCCCCAGGCCTCAC CATCAGCAACTCCTGTCCAGCTAACCTTCCCAACATCAAAAGGGAGCTCACAGAGTCTGA AGCGAGAGCGCTGGCCAAAGAGAGGCAAAAAAAGGACAATCACAACTTGATTGAACGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGAGGCGCTTAGAGTTCAGATGTTCATGCCCTGTTCCTTTGAAAGCTTGTATCTCAG TTCCGAGGAGCATCCTGGGGCCTCCAAGCCTCCGATAAGCTCCTCCAGTATGACATCACG CATCTTGCTACGCCAGCAACTCATGCGTGAGCAGATGCAGGAGCAGGAACGCAGGGAGCA GCAGCAGAAGCTGCAGGCGGCCCAGTTCATGCAACAGAGAGTGCCCGTGAGTCCGACACC AGCCATAAACGTCAGCGTGCCTACCACACTCCCCTCCGCCACCCAGGTGCCCATGGAAGT CCTTAAGGTGCAGACCCACCTCGAAAACCCCACCAAGTACCACATACAGCAAGCCCAAAG GCAGCAGGTAAAGCAGTACCTTTCTACCACTTTAGCAAATAAACATGCCAACCAAGTCCT GAGCTTGCCATGTCCAAACCAGCCTGGCGACCATGTCATGCCACCGGTGCCGGGGAGCAG CGCACCCAACAGCCCCATGGCTATGCTTACACTTAACTCCAACTGTGAAAAAGAGGGATT TTATAAGTTTGAAGAACAAAACAGGGCGGAGAGCGAATGCCCAAGTATGAACAAGCATTC ACGAGCGTCGTGCATGCAGATGGATGATGTAATCGATGACATCATTAGCCTAGAATCAAG TTATAATGAAGAAATCCTGGGCTTGATGGATCCTGCCTTGCAAATGGCGAATACGTTACC CGTCTCTGGAAACTTGATTGATCTTTATGGAAACCAAGGCCTGCCACCCCCAGGCCTCAC CATCAGCAACTCCTGTCCAGCTAACCTTCCCAACATCAAAAGGGAGCTCACAGAGTCTGA AGCGAGAGCGCTGGCCAAAGAGAGGCAAAAAAAGGACAATCACAACTTGATTGAACGAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 58-216, - strand, RNAz p=0.967143 | |
| 715-833, - strand, RNAz p=0.613414 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 58-216, - strand, RNAz p=0.967143 | |
| 715-833, - strand, RNAz p=0.613414 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 58-309, gnl|bosTau2|chr22 (25286424-25286675) | |
| 58-309, gnl|Hg17|chr3 (70010975-70011226) | |
| 58-309, gnl|Mm7|chr6 (98029134-98029385) | |
| 715-833, gnl|bosTau2|chr22 (25517600-25517482) | |
| 715-833, gnl|canFam2|chr20 (24872033-24871839) | |
| 715-833, gnl|danRer3|chr23 (770779-770618) | |
| 715-833, gnl|dasNov1|scaffold_9405 (40426-40615) | |
| 715-833, gnl|echTel1|scaffold_291988 (7316-7122) | |
| 715-833, gnl|fr1|chrUn (89057399-89057545) | |
| 715-833, gnl|galGal2|chr12 (15406784-15406944) | |
| 715-833, gnl|hg17|chr3 (70080847-70081044) | |
| 715-833, gnl|Hg17|chr3 (70080891-70081009) | |
| 715-833, gnl|loxAfr1|scaffold_1767 (37259-37067) | |
| 715-833, gnl|mm7|chr6 (98091928-98092120) | |
| 715-833, gnl|Mm7|chr6 (98091967-98092085) | |
| 715-833, gnl|monDom2|scaffold_5 (17395040-17395218) | |
| 715-833, gnl|oryCun1|scaffold_214924 (76186-75904) | |
| 715-833, gnl|panTro1|chr2 (71891207-71891404) | |
| 715-833, gnl|rheMac2|chr2 (66223975-66223778) | |
| 715-833, gnl|rn3|chr4 (132968852-132969044) | |
| 715-833, gnl|tetNig1|chr11 (10225000-10224878) | |
| 715-833, gnl|xenTro1|scaffold_7775 (9260-9456) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-309, gnl|bosTau2|chr22 (25286424-25286675) | |
| 58-309, gnl|Hg17|chr3 (70010975-70011226) | |
| 58-309, gnl|Mm7|chr6 (98029134-98029385) | |
| 715-833, gnl|bosTau2|chr22 (25517600-25517482) | |
| 715-833, gnl|canFam2|chr20 (24872033-24871839) | |
| 715-833, gnl|danRer3|chr23 (770779-770618) | |
| 715-833, gnl|dasNov1|scaffold_9405 (40426-40615) | |
| 715-833, gnl|echTel1|scaffold_291988 (7316-7122) | |
| 715-833, gnl|fr1|chrUn (89057399-89057545) | |
| 715-833, gnl|galGal2|chr12 (15406784-15406944) | |
| 715-833, gnl|hg17|chr3 (70080847-70081044) | |
| 715-833, gnl|Hg17|chr3 (70080891-70081009) | |
| 715-833, gnl|loxAfr1|scaffold_1767 (37259-37067) | |
| 715-833, gnl|mm7|chr6 (98091928-98092120) | |
| 715-833, gnl|Mm7|chr6 (98091967-98092085) | |
| 715-833, gnl|monDom2|scaffold_5 (17395040-17395218) | |
| 715-833, gnl|oryCun1|scaffold_214924 (76186-75904) | |
| 715-833, gnl|panTro1|chr2 (71891207-71891404) | |
| 715-833, gnl|rheMac2|chr2 (66223975-66223778) | |
| 715-833, gnl|rn3|chr4 (132968852-132969044) | |
| 715-833, gnl|tetNig1|chr11 (10225000-10224878) | |
| 715-833, gnl|xenTro1|scaffold_7775 (9260-9456) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (0.146284) | |
| ldo (0.0970026) |