Ss1.1-Liv1-LVRM1A080170.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGGGGACAGAAGCTGACGGTAGCATTCCCTGTGCAGGTTCTTCATGGATCCATGAGCC TCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGGGCTTGGAGGA TGCCGGCAAAGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTACCTGGCTCCA GAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTTGGCAAGAGTA GACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTGTCCAGCTGGT CCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCCTCCTTGCTCC GGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTTGAAGACTGTG TTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGTGCGCAGACAG GGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGAGATCAGTCGG ATGAGGCGAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGACCAGTACTGGG CCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAGGGCCCAGTTC TCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAACACGAGGTTTC GGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAAGGAAAATATGACTTTGTAC TGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGCAGCAATTAGCA AGTCTAGTTTCAGCTTCGGTTTTAAAATATCTGGAATGTTTGAATTTGGCATCAGTAGCA CAAGTGATAAAGGCAAACGTTTTATTAGCAGAACCAAGCGATTCTCTCACACGAAAAGCA CATTTCTGCACGCGCGCTCTGACCTTGAGGTAGCGCGTTACAAGCTGAAATCCAGAAACC TCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGAGTACAGCTACG GGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGAGGCCGTGCTCG GGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAGAGCAGATTATT CTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGTCGCCATAGAAG AGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCTCAATGAGATAA AAGACAGAAACAAGAGAAGCAGCATGGTGAATGACTTGGTGGTCCTTGTGCGGGGAGGTG CAAGTGAACACATCACTGCCCTGGCATATAAGGATCTGCCAACAGCGGACCTGATGCAGG AATGGGGAGATGCAGTGCAGTACAACCCAGACATCATCAAAATTAAGGCAGAGCCTCTCT ATGAACTGGTGACAGCCGCGGACTTTGCCTATTCCAGCACAGTGAAGCAGAACATGAAGC GAGCCCTGGAGGAGTTCGAGAAGGAAATCAGCTCCTGCCACTGTGCTCCCTGCCAGGGGA ATGGAGTCCCTGTCCTGAAAGAATCACGCTGTGACTGCATCTGTCCTGCTGGATTCCAAG GCTCAGCCTGTGAGGTCACCAATCGGAAAAATGTCCCCATTGATGGGAAGTGGAATTGCT GGTCAGACTGGTCTCCGTGTTCTGGAGGACGTAAAACAAGACGAAGGCAGTGCAACAATC CACCTCCTCAAAATGGGGGCAGCCCCTGCTTGGGTCCTGCTTCAGAAACACTTAACTGTT AAGGAAGGGAGAGCTTCTAGCGGGTGATGCTACTGTGGGCTGCACACAGTGAGAGCTCTG AGCCCTTAGGAACCCAGGCCAGCTCATCTCCACACCAGCTCCCACCTGGGCCTGGCCCAG GGGTGGGAGGGCTGTGCCATTCAGATTTGAAATAAAGATGGTATTTGTAAAATGCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGGGGACAGAAGCTGACGGTAGCATTCCCTGTGCAGGTTCTTCATGGATCCATGAGCC TCAGTCAGATCTCCTGTCGCATAGAAAAAATGAAGACCTCTGGGACGTGGGCTTGGAGGA TGCCGGCAAAGCTGTTTCTTCTCTGTGCTGCCCTGGGGTGTCTCAGTTTACCTGGCTCCA GAGGTGAGAGGCCACACTCTCTTGAGTCAAATGCAGTCAACGAGAGCCTTGGCAAGAGTA GACAGACGCGGAGTGTGGATGTCACCTTGACGCCTATTGATTGTGAACTGTCCAGCTGGT CCTCCTGGACCACGTGTGATCCCTGTCAGAAGAAAAGGTACAGACATGCCTCCTTGCTCC GGCCCTCTCAGTTCCATGGGGAACCGTGCCACTTCTCTGACAAGGAAGTTGAAGACTGTG TTTCCAACAGACCATGCCGAAGTCAAGTGCGATGTGAAGGCTTTGTCTGTGCGCAGACAG GGAGGTGCATCAACCGTAGACTTCTTTGCAATGGTGACAATGACTGTGGAGATCAGTCGG ATGAGGCGAACTGTAAAAGGATTTATAAAAAGTGTCAGCAGGAAATGGACCAGTACTGGG CCATTGGCAGCCTGGCCAGTGGGATAAATTTGTTCACGAACAACTTGGAGGGCCCAGTTC TCGATCACAGGTATTACGCCGGTGCATGCTCCCCCCATTACATACTCAACACGAGGTTTC GGAAACCATACAATGTGGAAAACTTCAACCCACAGACCCAAGGAAAATATGACTTTGTAC TGACAGAATACGAATCATACTCAGATTTCGAACAAAATGTCACAACTGCAGCAATTAGCA AGTCTAGTTTCAGCTTCGGTTTTAAAATATCTGGAATGTTTGAATTTGGCATCAGTAGCA CAAGTGATAAAGGCAAACGTTTTATTAGCAGAACCAAGCGATTCTCTCACACGAAAAGCA CATTTCTGCACGCGCGCTCTGACCTTGAGGTAGCGCGTTACAAGCTGAAATCCAGAAACC TCATGCTGCATTACGAGTTCCTTCAGAGGGTCAAGCAGCTGCCTCTGGAGTACAGCTACG GGGAGTACAGAGATCTCTTCCGAGATTTTGGGACCCACTACATCACAGAGGCCGTGCTCG GGGGTGTTTATGAGTACACACTCATCATGAACAAAGAGGCCATGGAGAGAGCAGATTATT CTCTAAAGGATGTCCATGCCTGTGCCCAACATGGTTTTAAAATTGGTGTCGCCATAGAAG AGGTCTACATCAAGTTGGGGGTGTCGGTGCACAAGTGCAAGGACATTCTCAATGAGATAA AAGACAGAAACAAGAGAAGCAGCATGGTGAATGACTTGGTGGTCCTTGTGCGGGGAGGTG CAAGTGAACACATCACTGCCCTGGCATATAAGGATCTGCCAACAGCGGACCTGATGCAGG AATGGGGAGATGCAGTGCAGTACAACCCAGACATCATCAAAATTAAGGCAGAGCCTCTCT ATGAACTGGTGACAGCCGCGGACTTTGCCTATTCCAGCACAGTGAAGCAGAACATGAAGC GAGCCCTGGAGGAGTTCGAGAAGGAAATCAGCTCCTGCCACTGTGCTCCCTGCCAGGGGA ATGGAGTCCCTGTCCTGAAAGAATCACGCTGTGACTGCATCTGTCCTGCTGGATTCCAAG GCTCAGCCTGTGAGGTCACCAATCGGAAAAATGTCCCCATTGATGGGAAGTGGAATTGCT GGTCAGACTGGTCTCCGTGTTCTGGAGGACGTAAAACAAGACGAAGGCAGTGCAACAATC CACCTCCTCAAAATGGGGGCAGCCCCTGCTTGGGTCCTGCTTCAGAAACACTTAACTGTT AAGGAAGGGAGAGCTTCTAGCGGGTGATGCTACTGTGGGCTGCACACAGTGAGAGCTCTG AGCCCTTAGGAACCCAGGCCAGCTCATCTCCACACCAGCTCCCACCTGGGCCTGGCCCAG GGGTGGGAGGGCTGTGCCATTCAGATTTGAAATAAAGATGGTATTTGTAAAATGCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1322-1440, + strand, RNAz p=0.696673 | |
| 1711-1829, + strand, RNAz p=0.950403 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1322-1440, + strand, RNAz p=0.696673 | |
| 1711-1829, + strand, RNAz p=0.950403 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 180-338, gnl|bosTau2|chr3 (59192490-59192332) | |
| 180-338, gnl|Hg17|chr1 (57137872-57137714) | |
| 180-338, gnl|Mm7|chr4 (104150716-104150874) | |
| 478-630, gnl|bosTau2|chr3 (59187323-59187172) | |
| 478-630, gnl|canFam2|chr5 (55551781-55551661) | |
| 478-630, gnl|dasNov1|scaffold_1432 (5-101) | |
| 478-630, gnl|echTel1|scaffold_321595 (4228-4108) | |
| 478-630, gnl|fr1|chrUn (282478574-282478475) | |
| 478-630, gnl|galGal2|chr8 (26088308-26088412) | |
| 478-630, gnl|hg17|chr1 (57132345-57132465) | |
| 478-630, gnl|Hg17|chr1 (57132524-57132373) | |
| 478-630, gnl|loxAfr1|scaffold_57094 (7601-7721) | |
| 478-630, gnl|mm7|chr4 (104159507-104159387) | |
| 478-630, gnl|Mm7|chr4 (104159326-104159477) | |
| 478-630, gnl|oryCun1|scaffold_204024 (179748-179868) | |
| 478-630, gnl|panTro1|chr1 (55474928-55475048) | |
| 478-630, gnl|rheMac2|chr1 (59822202-59822322) | |
| 478-630, gnl|rn3|chr5 (125748718-125748598) | |
| 478-630, gnl|tetNig1|chr15 (2765465-2765555) | |
| 478-630, gnl|xenTro1|scaffold_1 (4565232-4565119) | |
| 953-1194, gnl|bosTau2|chr3 (59175841-59175600) | |
| 953-1194, gnl|Hg17|chr1 (57123756-57123515) | |
| 953-1194, gnl|Mm7|chr4 (104166913-104167154) | |
| 1322-1488, gnl|bosTau2|chr3 (59170895-59170729) | |
| 1322-1488, gnl|canFam2|chr5 (55566025-55565879) | |
| 1322-1488, gnl|danRer3|chrNA (33628306-33628160) | |
| 1322-1488, gnl|dasNov1|scaffold_197829 (4905-4759) | |
| 1322-1488, gnl|echTel1|scaffold_325152 (83917-84063) | |
| 1322-1488, gnl|fr1|chrUn (282479884-282479752) | |
| 1322-1488, gnl|galGal2|chr8 (26082536-26082680) | |
| 1322-1488, gnl|hg17|chr1 (57118540-57118686) | |
| 1322-1488, gnl|Hg17|chr1 (57118708-57118542) | |
| 1322-1488, gnl|loxAfr1|scaffold_5667 (11317-11433) | |
| 1322-1488, gnl|mm7|chr4 (104169835-104169689) | |
| 1322-1488, gnl|Mm7|chr4 (104169665-104169831) | |
| 1322-1488, gnl|monDom2|scaffold_40 (18703398-18703252) | |
| 1322-1488, gnl|panTro1|chr1 (55461036-55461182) | |
| 1322-1488, gnl|rheMac2|chr1 (59808387-59808533) | |
| 1322-1488, gnl|rn3|chr5 (125759894-125759748) | |
| 1322-1488, gnl|tetNig1|chr15 (2764256-2764388) | |
| 1322-1488, gnl|xenTro1|scaffold_1 (4573359-4573214) | |
| 1711-2036, gnl|bosTau2|chr3 (59156977-59156651) | |
| 1711-2036, gnl|Hg17|chr1 (57107252-57106939) | |
| 1711-2036, gnl|Mm7|chr4 (104180448-104180741) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 180-338, gnl|bosTau2|chr3 (59192490-59192332) | |
| 180-338, gnl|Hg17|chr1 (57137872-57137714) | |
| 180-338, gnl|Mm7|chr4 (104150716-104150874) | |
| 478-630, gnl|bosTau2|chr3 (59187323-59187172) | |
| 478-630, gnl|canFam2|chr5 (55551781-55551661) | |
| 478-630, gnl|dasNov1|scaffold_1432 (5-101) | |
| 478-630, gnl|echTel1|scaffold_321595 (4228-4108) | |
| 478-630, gnl|fr1|chrUn (282478574-282478475) | |
| 478-630, gnl|galGal2|chr8 (26088308-26088412) | |
| 478-630, gnl|hg17|chr1 (57132345-57132465) | |
| 478-630, gnl|Hg17|chr1 (57132524-57132373) | |
| 478-630, gnl|loxAfr1|scaffold_57094 (7601-7721) | |
| 478-630, gnl|mm7|chr4 (104159507-104159387) | |
| 478-630, gnl|Mm7|chr4 (104159326-104159477) | |
| 478-630, gnl|oryCun1|scaffold_204024 (179748-179868) | |
| 478-630, gnl|panTro1|chr1 (55474928-55475048) | |
| 478-630, gnl|rheMac2|chr1 (59822202-59822322) | |
| 478-630, gnl|rn3|chr5 (125748718-125748598) | |
| 478-630, gnl|tetNig1|chr15 (2765465-2765555) | |
| 478-630, gnl|xenTro1|scaffold_1 (4565232-4565119) | |
| 953-1194, gnl|bosTau2|chr3 (59175841-59175600) | |
| 953-1194, gnl|Hg17|chr1 (57123756-57123515) | |
| 953-1194, gnl|Mm7|chr4 (104166913-104167154) | |
| 1322-1488, gnl|bosTau2|chr3 (59170895-59170729) | |
| 1322-1488, gnl|canFam2|chr5 (55566025-55565879) | |
| 1322-1488, gnl|danRer3|chrNA (33628306-33628160) | |
| 1322-1488, gnl|dasNov1|scaffold_197829 (4905-4759) | |
| 1322-1488, gnl|echTel1|scaffold_325152 (83917-84063) | |
| 1322-1488, gnl|fr1|chrUn (282479884-282479752) | |
| 1322-1488, gnl|galGal2|chr8 (26082536-26082680) | |
| 1322-1488, gnl|hg17|chr1 (57118540-57118686) | |
| 1322-1488, gnl|Hg17|chr1 (57118708-57118542) | |
| 1322-1488, gnl|loxAfr1|scaffold_5667 (11317-11433) | |
| 1322-1488, gnl|mm7|chr4 (104169835-104169689) | |
| 1322-1488, gnl|Mm7|chr4 (104169665-104169831) | |
| 1322-1488, gnl|monDom2|scaffold_40 (18703398-18703252) | |
| 1322-1488, gnl|panTro1|chr1 (55461036-55461182) | |
| 1322-1488, gnl|rheMac2|chr1 (59808387-59808533) | |
| 1322-1488, gnl|rn3|chr5 (125759894-125759748) | |
| 1322-1488, gnl|tetNig1|chr15 (2764256-2764388) | |
| 1322-1488, gnl|xenTro1|scaffold_1 (4573359-4573214) | |
| 1711-2036, gnl|bosTau2|chr3 (59156977-59156651) | |
| 1711-2036, gnl|Hg17|chr1 (57107252-57106939) | |
| 1711-2036, gnl|Mm7|chr4 (104180448-104180741) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) |