Ss1.1-Liv1-LVRM1A080204.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGGGGCCTGACGGGATCGTGGCGGTCCGCGCTCCCAGCTCGGAACTGCGGCTACCTTTG CAGACGCTGTGAAGATGGCGACGTCCCTGGGCTCCAACACCTACAACAGGCAGAACTGGG AGGATGCGGACTTTCCTATTCTGTGCCAGACTTGTCTTGGGGAAAACCCATACATCCGAA TGACCAAAGAAAAGTACGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAGTGTTTC GCTGGTGCCCCGGCGTCCGAATGCGGTTCAAGAAGACCGAAGTGTGCCAAACCTGCAGTA AATTGAAGAATGTCTGCCAGACCTGCCTCTTGGACCTAGAGTATGGCCTGCCCATCCAGG TTCGAGACGCAGGACTGTCTTTTAAGGATGACATGCCAAAGTCGGATGTCAACAAAGAGT ACTACACGCAGAACATGGAGAGAGAGATTTCCAACTCGGACGGGACGCGGCCAGTTGGCA TGTTGGGGAAGGCCACGTCCACCAGTGACATGCTGCTCAAGCTGGCCCGGACCACGCCCT ACTACAAGAGGAATCGGCCGCACATCTGTTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAG GAGAGGAGTGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGGGGCCTGACGGGATCGTGGCGGTCCGCGCTCCCAGCTCGGAACTGCGGCTACCTTTG CAGACGCTGTGAAGATGGCGACGTCCCTGGGCTCCAACACCTACAACAGGCAGAACTGGG AGGATGCGGACTTTCCTATTCTGTGCCAGACTTGTCTTGGGGAAAACCCATACATCCGAA TGACCAAAGAAAAGTACGGGAAGGAATGCAAAATCTGTGCCAGGCCATTCACAGTGTTTC GCTGGTGCCCCGGCGTCCGAATGCGGTTCAAGAAGACCGAAGTGTGCCAAACCTGCAGTA AATTGAAGAATGTCTGCCAGACCTGCCTCTTGGACCTAGAGTATGGCCTGCCCATCCAGG TTCGAGACGCAGGACTGTCTTTTAAGGATGACATGCCAAAGTCGGATGTCAACAAAGAGT ACTACACGCAGAACATGGAGAGAGAGATTTCCAACTCGGACGGGACGCGGCCAGTTGGCA TGTTGGGGAAGGCCACGTCCACCAGTGACATGCTGCTCAAGCTGGCCCGGACCACGCCCT ACTACAAGAGGAATCGGCCGCACATCTGTTCCTTCTGGGTGAAAGGAGAGTGTAAGAGAG GAGAGGAGTGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | More info |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
| 2-129, gnl|bosTau2|chr7 (39337718-39337594) | |
| 2-129, gnl|Hg17|chr5 (150060812-150060686) | |
| 2-129, gnl|Mm7|chr18 (60950196-60950319) | |
| 213-346, gnl|bosTau2|chr7 (39335431-39335298) | |
| 213-346, gnl|canFam2|chr32 (35034240-35034373) | |
| 213-346, gnl|canFam2|chr32 (35034375-35034240) | |
| 213-346, gnl|canFam2|chr4 (61666487-61666300) | |
| 213-346, gnl|danRer3|chr19 (5856936-5857068) | |
| 213-346, gnl|danRer3|chr19 (5857070-5856935) | |
| 213-346, gnl|danRer3|chr19 (5857090-5856902) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1811-1944) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1946-1811) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1967-1780) | |
| 213-346, gnl|echTel1|scaffold_312144 (47810-47677) | |
| 213-346, gnl|echTel1|scaffold_312144 (47675-47810) | |
| 213-346, gnl|echTel1|scaffold_312144 (47653-47841) | |
| 213-346, gnl|fr1|chrUn (173582729-173582597) | |
| 213-346, gnl|fr1|chrUn (173582595-173582730) | |
| 213-346, gnl|fr1|chrUn (173582588-173582743) | |
| 213-346, gnl|galGal2|chr13 (12025667-12025800) | |
| 213-346, gnl|galGal2|chr13 (12025802-12025667) | |
| 213-346, gnl|galGal2|chr13 (12025807-12025622) | |
| 213-346, gnl|hg17|chr16 (31599799-31599932) | |
| 213-346, gnl|hg17|chr5 (150058233-150058420) | |
| 213-346, gnl|Hg17|chr5 (150058386-150058253) | |
| 213-346, gnl|hg17|chr9 (76132281-76132416) | |
| 213-346, gnl|mm7|chr18 (60953801-60953934) | |
| 213-346, gnl|mm7|chr18 (60953934-60953801) | |
| 213-346, gnl|mm7|chr18 (60953957-60953771) | |
| 213-346, gnl|Mm7|chr18 (60953802-60953935) | |
| 213-346, gnl|monDom2|scaffold_6 (28784256-28784123) | |
| 213-346, gnl|monDom2|scaffold_6 (28784121-28784256) | |
| 213-346, gnl|monDom2|scaffold_6 (56981225-56981406) | |
| 213-346, gnl|oryCun1|scaffold_211537 (2921-3054) | |
| 213-346, gnl|oryCun1|scaffold_211537 (3054-2921) | |
| 213-346, gnl|oryCun1|scaffold_211537 (3082-2896) | |
| 213-346, gnl|panTro1|chr11 (60016459-60016594) | |
| 213-346, gnl|panTro1|chr18 (32484182-32484315) | |
| 213-346, gnl|panTro1|chr4 (157009401-157009588) | |
| 213-346, gnl|rheMac2|chr15 (85054198-85054333) | |
| 213-346, gnl|rheMac2|chr20 (29824013-29824155) | |
| 213-346, gnl|rheMac2|chr6 (147174058-147174245) | |
| 213-346, gnl|rn3|chr18 (56584697-56584830) | |
| 213-346, gnl|rn3|chr18 (56584830-56584697) | |
| 213-346, gnl|rn3|chr18 (56584853-56584669) | |
| 213-346, gnl|tetNig1|chr1 (538219-538065) | |
| 213-346, gnl|xenTro1|scaffold_64 (1861037-1860904) | |
| 213-346, gnl|xenTro1|scaffold_64 (1860902-1861037) | |
| 213-346, gnl|xenTro1|scaffold_64 (1860895-1861080) | |
| 445-612, gnl|bosTau2|chr7 (39334036-39333869) | |
| 445-612, gnl|canFam2|chr32 (35034486-35034646) | |
| 445-612, gnl|canFam2|chr32 (35034646-35034475) | |
| 445-612, gnl|danRer3|chr19 (5848090-5847934) | |
| 445-612, gnl|danRer3|chr19 (5847932-5848103) | |
| 445-612, gnl|dasNov1|scaffold_37885 (4486-4643) | |
| 445-612, gnl|dasNov1|scaffold_37885 (4646-4475) | |
| 445-612, gnl|fr1|chrUn (173582203-173582046) | |
| 445-612, gnl|fr1|chrUn (173582045-173582211) | |
| 445-612, gnl|galGal2|chr13 (12026382-12026539) | |
| 445-612, gnl|galGal2|chr13 (12026535-12026374) | |
| 445-612, gnl|hg17|chr16 (31600027-31600183) | |
| 445-612, gnl|Hg17|chr5 (150056462-150056295) | |
| 445-612, gnl|hg17|chr9 (76131694-76131865) | |
| 445-612, gnl|loxAfr1|scaffold_29481 (7528-7683) | |
| 445-612, gnl|loxAfr1|scaffold_29481 (7686-7516) | |
| 445-612, gnl|mm7|chr18 (60955803-60955963) | |
| 445-612, gnl|mm7|chr18 (60955963-60955792) | |
| 445-612, gnl|Mm7|chr18 (60955790-60955957) | |
| 445-612, gnl|monDom2|scaffold_6 (28784010-28783850) | |
| 445-612, gnl|monDom2|scaffold_6 (28783850-28784021) | |
| 445-612, gnl|oryCun1|scaffold_192975 (124-9) | |
| 445-612, gnl|oryCun1|scaffold_192975 (9-147) | |
| 445-612, gnl|panTro1|chr11 (60015872-60016043) | |
| 445-612, gnl|panTro1|chr18 (32484410-32484566) | |
| 445-612, gnl|rheMac2|chr15 (85053926-85054098) | |
| 445-612, gnl|rheMac2|chr20 (29824250-29824407) | |
| 445-612, gnl|rn3|chr18 (56586568-56586726) | |
| 445-612, gnl|rn3|chr18 (56586726-56586555) | |
| 445-612, gnl|xenTro1|scaffold_64 (1859275-1859115) | |
| 445-612, gnl|xenTro1|scaffold_64 (1859115-1859285) |
| Aligned organism(s): 80 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-129, gnl|bosTau2|chr7 (39337718-39337594) | |
| 2-129, gnl|Hg17|chr5 (150060812-150060686) | |
| 2-129, gnl|Mm7|chr18 (60950196-60950319) | |
| 213-346, gnl|bosTau2|chr7 (39335431-39335298) | |
| 213-346, gnl|canFam2|chr32 (35034240-35034373) | |
| 213-346, gnl|canFam2|chr32 (35034375-35034240) | |
| 213-346, gnl|canFam2|chr4 (61666487-61666300) | |
| 213-346, gnl|danRer3|chr19 (5856936-5857068) | |
| 213-346, gnl|danRer3|chr19 (5857070-5856935) | |
| 213-346, gnl|danRer3|chr19 (5857090-5856902) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1811-1944) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1946-1811) | |
| 213-346, gnl|dasNov1|scaffold_37885 (1967-1780) | |
| 213-346, gnl|echTel1|scaffold_312144 (47810-47677) | |
| 213-346, gnl|echTel1|scaffold_312144 (47675-47810) | |
| 213-346, gnl|echTel1|scaffold_312144 (47653-47841) | |
| 213-346, gnl|fr1|chrUn (173582729-173582597) | |
| 213-346, gnl|fr1|chrUn (173582595-173582730) | |
| 213-346, gnl|fr1|chrUn (173582588-173582743) | |
| 213-346, gnl|galGal2|chr13 (12025667-12025800) | |
| 213-346, gnl|galGal2|chr13 (12025802-12025667) | |
| 213-346, gnl|galGal2|chr13 (12025807-12025622) | |
| 213-346, gnl|hg17|chr16 (31599799-31599932) | |
| 213-346, gnl|hg17|chr5 (150058233-150058420) | |
| 213-346, gnl|Hg17|chr5 (150058386-150058253) | |
| 213-346, gnl|hg17|chr9 (76132281-76132416) | |
| 213-346, gnl|mm7|chr18 (60953801-60953934) | |
| 213-346, gnl|mm7|chr18 (60953934-60953801) | |
| 213-346, gnl|mm7|chr18 (60953957-60953771) | |
| 213-346, gnl|Mm7|chr18 (60953802-60953935) | |
| 213-346, gnl|monDom2|scaffold_6 (28784256-28784123) | |
| 213-346, gnl|monDom2|scaffold_6 (28784121-28784256) | |
| 213-346, gnl|monDom2|scaffold_6 (56981225-56981406) | |
| 213-346, gnl|oryCun1|scaffold_211537 (2921-3054) | |
| 213-346, gnl|oryCun1|scaffold_211537 (3054-2921) | |
| 213-346, gnl|oryCun1|scaffold_211537 (3082-2896) | |
| 213-346, gnl|panTro1|chr11 (60016459-60016594) | |
| 213-346, gnl|panTro1|chr18 (32484182-32484315) | |
| 213-346, gnl|panTro1|chr4 (157009401-157009588) | |
| 213-346, gnl|rheMac2|chr15 (85054198-85054333) | |
| 213-346, gnl|rheMac2|chr20 (29824013-29824155) | |
| 213-346, gnl|rheMac2|chr6 (147174058-147174245) | |
| 213-346, gnl|rn3|chr18 (56584697-56584830) | |
| 213-346, gnl|rn3|chr18 (56584830-56584697) | |
| 213-346, gnl|rn3|chr18 (56584853-56584669) | |
| 213-346, gnl|tetNig1|chr1 (538219-538065) | |
| 213-346, gnl|xenTro1|scaffold_64 (1861037-1860904) | |
| 213-346, gnl|xenTro1|scaffold_64 (1860902-1861037) | |
| 213-346, gnl|xenTro1|scaffold_64 (1860895-1861080) | |
| 445-612, gnl|bosTau2|chr7 (39334036-39333869) | |
| 445-612, gnl|canFam2|chr32 (35034486-35034646) | |
| 445-612, gnl|canFam2|chr32 (35034646-35034475) | |
| 445-612, gnl|danRer3|chr19 (5848090-5847934) | |
| 445-612, gnl|danRer3|chr19 (5847932-5848103) | |
| 445-612, gnl|dasNov1|scaffold_37885 (4486-4643) | |
| 445-612, gnl|dasNov1|scaffold_37885 (4646-4475) | |
| 445-612, gnl|fr1|chrUn (173582203-173582046) | |
| 445-612, gnl|fr1|chrUn (173582045-173582211) | |
| 445-612, gnl|galGal2|chr13 (12026382-12026539) | |
| 445-612, gnl|galGal2|chr13 (12026535-12026374) | |
| 445-612, gnl|hg17|chr16 (31600027-31600183) | |
| 445-612, gnl|Hg17|chr5 (150056462-150056295) | |
| 445-612, gnl|hg17|chr9 (76131694-76131865) | |
| 445-612, gnl|loxAfr1|scaffold_29481 (7528-7683) | |
| 445-612, gnl|loxAfr1|scaffold_29481 (7686-7516) | |
| 445-612, gnl|mm7|chr18 (60955803-60955963) | |
| 445-612, gnl|mm7|chr18 (60955963-60955792) | |
| 445-612, gnl|Mm7|chr18 (60955790-60955957) | |
| 445-612, gnl|monDom2|scaffold_6 (28784010-28783850) | |
| 445-612, gnl|monDom2|scaffold_6 (28783850-28784021) | |
| 445-612, gnl|oryCun1|scaffold_192975 (124-9) | |
| 445-612, gnl|oryCun1|scaffold_192975 (9-147) | |
| 445-612, gnl|panTro1|chr11 (60015872-60016043) | |
| 445-612, gnl|panTro1|chr18 (32484410-32484566) | |
| 445-612, gnl|rheMac2|chr15 (85053926-85054098) | |
| 445-612, gnl|rheMac2|chr20 (29824250-29824407) | |
| 445-612, gnl|rn3|chr18 (56586568-56586726) | |
| 445-612, gnl|rn3|chr18 (56586726-56586555) | |
| 445-612, gnl|xenTro1|scaffold_64 (1859275-1859115) | |
| 445-612, gnl|xenTro1|scaffold_64 (1859115-1859285) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nca (0.136874) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| nmm (0.132802) | |
| ebs (0.118301) | |
| cty (0.10408) |