Non-Coding RNA Search

Ss1.1-Liv1-LVRM1B070184.5

Sequence:


               
               CATTTGGATGGAATCGGAGCGGAGAGAGAGGGGCCATTTTGACTCTGGGGTCAAAGGGAA
TGACCGATCTACTGGGGTCCGGGAGCGGAGGCACCCAGGTCCAAGGATAACTTTGGGGCC
ATGACTGCCATGATTCTCACAGTGGATCCCGGATTTCTGCATTCCGAGCAATGGCAGGTG
CCACTGGACTTGTTCTGAGAACTTTTTCCTAAAGGATGGCCAAGGGGCTCCTGATGACCT
ATGCCCTTTGGGCTGTAGGGGGCCCTGCTGGGCTCCACCACCTGTACCTGGGGCGGGACA
GCCATGCACTGCTCTGGATGCTTACCCTGGGAGGGGGTGGGCTAGGCTGGCTCTGGGAAT
TCTGGAAGCTCCCAAGCTTTGTAGCGCAGGCCAACAGAGCCCAGGGGCAGAGGCACAGCT
CAGGAAGGGGGACACCCCCTCTGAGCCCCATTCGCTTTGCTGCTCAGATGATAGTGGGCA
TCTATTTTGGCCTTGTGGCTCTCATTAGCCTTTCCTTCATGGCCAGCTTCTATATTGTGG
GCCTCCCACTGGCAGTTGGCTTAGGAGTCTTGCTGGTAGCTGCTGTTGGCAACCAGACCT
CAGACTTTAAGCACACCCTAGGGGTGGCCTTTCTTATTTCCCCTATCTTCTATGGCCGCC
CCATAGCCATCCTGCCCATCAGCTTGGCTGCCAGCATCACAGCCCAGAAGCATCGCCGCT
ACAAAACTTCAACTGGGTCAGAGACGCTCAGTGTGCGGCTCTACCGCCTGGGCTTGGCTT
ATCTGGCTTTCACAGGCCCGCTAGCATACAGCGCCCTCTGCAACACAGCCACCACCCTCA
GCTATGTGGCAGAGACCCTTGGTTCCTTCTTGAGTTGGTTCAGTTTCTTCCCCCTCCTTG
GCCACCTGATGGAGTCTGTCCTCCTTCTGCCTTACCGAGTCTGGAGTCTGCTGGTGGGAG
ATTATGGCTTCAGCAGCGGCTACTTCCAGGAGTGGGAGAAGCTATATGAGTTTGTTCAGA
GTTTTCAGGATGAGAAGCGTCAGCTGGCATACCAGGTTTTGGGTCTTGCCGAGGGGGCAA
CAAATGAAGAAATACATCACAGATACCGGGAGCTGGTGAAGATCTGGCACCCTGACCACA
ATCGGCACCAGCCGGAGGAAGCTCAGCGGCACTTCCTGGAGATCCAGGCTGCCTATGAAG
TCCTGAGTCAGCCCAGGAAGCCCAGGGGGTCCTGGAGATTAAACACCGCCTTGTTTAAGG
AAGCGCTGTAGTTCAGTAGAGAGAAGACGGATGGAGAAGGAGATGGATTCTCCTTCTGCC
ACTGGCATGACCAGGATGAGCCACTTTACCATCGGGTCCCAGTTTTTTCCCTGTAAGGTG
AAGAAGTTGGACTTTGTTAAGATCGCTTTTCTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTGGATGGAATCGGAGCGGAGAGAGAGGGGCCATTTTGACTCTGGGGTCAAAGGGAA
TGACCGATCTACTGGGGTCCGGGAGCGGAGGCACCCAGGTCCAAGGATAACTTTGGGGCC
ATGACTGCCATGATTCTCACAGTGGATCCCGGATTTCTGCATTCCGAGCAATGGCAGGTG
CCACTGGACTTGTTCTGAGAACTTTTTCCTAAAGGATGGCCAAGGGGCTCCTGATGACCT
ATGCCCTTTGGGCTGTAGGGGGCCCTGCTGGGCTCCACCACCTGTACCTGGGGCGGGACA
GCCATGCACTGCTCTGGATGCTTACCCTGGGAGGGGGTGGGCTAGGCTGGCTCTGGGAAT
TCTGGAAGCTCCCAAGCTTTGTAGCGCAGGCCAACAGAGCCCAGGGGCAGAGGCACAGCT
CAGGAAGGGGGACACCCCCTCTGAGCCCCATTCGCTTTGCTGCTCAGATGATAGTGGGCA
TCTATTTTGGCCTTGTGGCTCTCATTAGCCTTTCCTTCATGGCCAGCTTCTATATTGTGG
GCCTCCCACTGGCAGTTGGCTTAGGAGTCTTGCTGGTAGCTGCTGTTGGCAACCAGACCT
CAGACTTTAAGCACACCCTAGGGGTGGCCTTTCTTATTTCCCCTATCTTCTATGGCCGCC
CCATAGCCATCCTGCCCATCAGCTTGGCTGCCAGCATCACAGCCCAGAAGCATCGCCGCT
ACAAAACTTCAACTGGGTCAGAGACGCTCAGTGTGCGGCTCTACCGCCTGGGCTTGGCTT
ATCTGGCTTTCACAGGCCCGCTAGCATACAGCGCCCTCTGCAACACAGCCACCACCCTCA
GCTATGTGGCAGAGACCCTTGGTTCCTTCTTGAGTTGGTTCAGTTTCTTCCCCCTCCTTG
GCCACCTGATGGAGTCTGTCCTCCTTCTGCCTTACCGAGTCTGGAGTCTGCTGGTGGGAG
ATTATGGCTTCAGCAGCGGCTACTTCCAGGAGTGGGAGAAGCTATATGAGTTTGTTCAGA
GTTTTCAGGATGAGAAGCGTCAGCTGGCATACCAGGTTTTGGGTCTTGCCGAGGGGGCAA
CAAATGAAGAAATACATCACAGATACCGGGAGCTGGTGAAGATCTGGCACCCTGACCACA
ATCGGCACCAGCCGGAGGAAGCTCAGCGGCACTTCCTGGAGATCCAGGCTGCCTATGAAG
TCCTGAGTCAGCCCAGGAAGCCCAGGGGGTCCTGGAGATTAAACACCGCCTTGTTTAAGG
AAGCGCTGTAGTTCAGTAGAGAGAAGACGGATGGAGAAGGAGATGGATTCTCCTTCTGCC
ACTGGCATGACCAGGATGAGCCACTTTACCATCGGGTCCCAGTTTTTTCCCTGTAAGGTG
AAGAAGTTGGACTTTGTTAAGATCGCTTTTCTCACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5RBD7_PONPY

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5RBD7_PONPY

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               256-935, - strand, RNAz p=0.956828

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-935, - strand, RNAz p=0.956828

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               98-1070, gnl|bosTau2|chr5 (24519528-24520500)
               

               
               98-1070, gnl|Hg17|chr12 (48028816-48029777)
               

               
               98-1070, gnl|Mm7|chr15 (99086230-99087198)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-1070, gnl|bosTau2|chr5 (24519528-24520500)
               

               
               98-1070, gnl|Hg17|chr12 (48028816-48029777)
               

               
               98-1070, gnl|Mm7|chr15 (99086230-99087198)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               jej (0.0989218)

	98-1070, gnl\|bosTau2\|chr5 (24519528-24520500)
	98-1070, gnl\|Hg17\|chr12 (48028816-48029777)
	98-1070, gnl\|Mm7\|chr15 (99086230-99087198)

	pro (0.512033)
	rec (0.17307)
	lun (0.150489)
	pty (0.142714)
	cst (0.140036)
	jej (0.0989218)