Non-Coding RNA Search

Ss1.1-Liv1-LVRM1B080021.5

Sequence:


               
               TATTTTGAAAACAATCTTCCAGGAGTCCTGGTGACACCTGAACCCGCGCTGACATGCCCC
CCGACTTAGGAAGCATCTCTAAAGAGCCCGACTGCCCCCGCTTCCCGCCGGCCTCAGCTC
TCGCTGCCCCCCAGCAGCACGCCATCCATGTGTTCCTCTCACTGCTCTGCACCCGGGCGT
GCGGCTCCACGTCTGCCTCTGCCTGGATCCAGCGGGCGCCAGGGTCGGTCTGGCCAAGGT
CCACGTGATGGGTCGTGCCCATCACGCCTCTCAGCCGAGCCCCCTGCCCGCTGAGGCCGA
GACTGAGGGACAGCTCCCAGCCTATATGAAGACCAAGAGCTCCCCAAACATCTTTTGCTT
CATTCCTTTGTCTGCTCTGTCCTGGGCTCCACCCGATGTCTGGATCCGTCCCAGAAAGTC
CTGGGATGTTCTCCTTGGGGCTAACGCCTTGACTGGCAGGACAGTGACACGGACAGGATA
AGAGTATAGTCAGGCAAAAATAAACTGTTGGGACCTAATTACAATTAAAAGCTCTTGCAC
AGAAAAGGAAACCATTGACAAAATGAAAAGAGAACCTACTGAATGAGAGAAAATATTTGC
AAATGAGACGACTGATAAGATGTTTATATCTAAAATATTGAAACAGCTCATACAAATCGA
CATCAAACAACCCCCCTGGGAGTTCCTTGGTGGTGCAGTGTCAGTGCTTGGGGTTTTCAC
TGCTGCAGCCGGGCTTCAGTTCCTGGTCTGGGAACTGAGATCCCATGTCAAGCCACTGTA
TGCTGTAGCCAGACAAAAAATTACCCAATTAAAAAATGGGCCAAAGAACCCCAATAGACA
TATTTCCAAAAAGGTGTACAGATAGCCGACAGGTACATGAAAAAATGTGACTTGACATCG
CTGCTCATCGGGGAAATGCAAATCAAAACCACAGCGAGATGCCACCTCACACCTGTCAGA
ATGGCCATCATCAAAAAAACCCAAAAATAGCAAATGCTGATGAGGATGTGGAAAAAACGC
AGCCTTCGTGCACTGTTGGTGGAAGTGTGAATTGGTGCAGCCACTGGGGAAAACCTTATG
GAGGTTTCTCAAAAAACTAAAAATAGAACTGCCTATGACTCAGCAATTCCCCTCCTGGGT
ATGACTCTGAAAAAAGTGCAAACGCTAATTCAAAAAGATAACATGCACCCCAGTGTTCTT
AGCAGCATCATTCACAGGAGCCGAGATATGGAAGCATCCTAAGTGTCCGTCAACACTAGT
AAGTGGCCTGGGGATTGAACCTGTGTCGTGGTGCAGCAGAGCCGCCACCAATCCTGTTCC
GCCACAGTGGGAACTCCAAGAACTCCAGAAATCTCTAGTCATTGTCTTTCATGAGCCATC
TCAGAGTGGAACAAGCCTTTCTAAGTGTGGCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTGAAAACAATCTTCCAGGAGTCCTGGTGACACCTGAACCCGCGCTGACATGCCCC
CCGACTTAGGAAGCATCTCTAAAGAGCCCGACTGCCCCCGCTTCCCGCCGGCCTCAGCTC
TCGCTGCCCCCCAGCAGCACGCCATCCATGTGTTCCTCTCACTGCTCTGCACCCGGGCGT
GCGGCTCCACGTCTGCCTCTGCCTGGATCCAGCGGGCGCCAGGGTCGGTCTGGCCAAGGT
CCACGTGATGGGTCGTGCCCATCACGCCTCTCAGCCGAGCCCCCTGCCCGCTGAGGCCGA
GACTGAGGGACAGCTCCCAGCCTATATGAAGACCAAGAGCTCCCCAAACATCTTTTGCTT
CATTCCTTTGTCTGCTCTGTCCTGGGCTCCACCCGATGTCTGGATCCGTCCCAGAAAGTC
CTGGGATGTTCTCCTTGGGGCTAACGCCTTGACTGGCAGGACAGTGACACGGACAGGATA
AGAGTATAGTCAGGCAAAAATAAACTGTTGGGACCTAATTACAATTAAAAGCTCTTGCAC
AGAAAAGGAAACCATTGACAAAATGAAAAGAGAACCTACTGAATGAGAGAAAATATTTGC
AAATGAGACGACTGATAAGATGTTTATATCTAAAATATTGAAACAGCTCATACAAATCGA
CATCAAACAACCCCCCTGGGAGTTCCTTGGTGGTGCAGTGTCAGTGCTTGGGGTTTTCAC
TGCTGCAGCCGGGCTTCAGTTCCTGGTCTGGGAACTGAGATCCCATGTCAAGCCACTGTA
TGCTGTAGCCAGACAAAAAATTACCCAATTAAAAAATGGGCCAAAGAACCCCAATAGACA
TATTTCCAAAAAGGTGTACAGATAGCCGACAGGTACATGAAAAAATGTGACTTGACATCG
CTGCTCATCGGGGAAATGCAAATCAAAACCACAGCGAGATGCCACCTCACACCTGTCAGA
ATGGCCATCATCAAAAAAACCCAAAAATAGCAAATGCTGATGAGGATGTGGAAAAAACGC
AGCCTTCGTGCACTGTTGGTGGAAGTGTGAATTGGTGCAGCCACTGGGGAAAACCTTATG
GAGGTTTCTCAAAAAACTAAAAATAGAACTGCCTATGACTCAGCAATTCCCCTCCTGGGT
ATGACTCTGAAAAAAGTGCAAACGCTAATTCAAAAAGATAACATGCACCCCAGTGTTCTT
AGCAGCATCATTCACAGGAGCCGAGATATGGAAGCATCCTAAGTGTCCGTCAACACTAGT
AAGTGGCCTGGGGATTGAACCTGTGTCGTGGTGCAGCAGAGCCGCCACCAATCCTGTTCC
GCCACAGTGGGAACTCCAAGAACTCCAGAAATCTCTAGTCATTGTCTTTCATGAGCCATC
TCAGAGTGGAACAAGCCTTTCTAAGTGTGGCAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               145-1255, gnl|bosTau2|chr1 (40688320-40689420)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               145-1255, gnl|bosTau2|chr1 (40688320-40689420)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cbl (0.229595)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.229595)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)