Non-Coding RNA Search

Ss1.1-Liv1-LVRM1B100185.5

Sequence:


               
               GCCGGTTCAGGTGTTTAACTTGCAGGGGGCGGTGGAGCCCATGCAGATTGACGTGGATCC
CCAGGAGGACCCGCAGAACGCACCCGATGTCAACTATGTCGTGGAGAACCCCACCCTGGA
TCTGGAGCAGTATGCGGCCAGCTACAGCGGCCTGATGCGCATCGAGCGGCTGCAGTTCAT
CGCCGACCACTGCCCCCCGCTGCGGGCGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCA
GCGGACCTTCAACGTGGACATGTACGAGGAGATCCACCGCAAGCTCTCGGAGGCCACCAG
GGAGCTGCAGAACACGCCCGACGCCATCCCCGAGAGTGGGGTGGAGCCCCCGCCCTTGGA
CACGGCCTGGGTGGAGGCCACTCGGAAGAAGGCCCTGCTGAAGCTGGAGAAGCTGGACAC
GGATCTGAAGAATTACAAGGGCAATTCTATCAAGGAGAGCATCAGGCGGGGCCATGACGA
CCTGGGCGACCACTATCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGTTATTCCCG
GGCCCGCGACTACTGCACCAGCGCCAAGCACGTCATTAACATGTGTCTGAACGTCATCAA
GGTCAGTGTGTACTTGCAGAATTGGTCTCATGTCTTGAGCTACGTCAGCAAGGCCGAGTC
CACCCCAGAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGTTCAGGTGTTTAACTTGCAGGGGGCGGTGGAGCCCATGCAGATTGACGTGGATCC
CCAGGAGGACCCGCAGAACGCACCCGATGTCAACTATGTCGTGGAGAACCCCACCCTGGA
TCTGGAGCAGTATGCGGCCAGCTACAGCGGCCTGATGCGCATCGAGCGGCTGCAGTTCAT
CGCCGACCACTGCCCCCCGCTGCGGGCGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCA
GCGGACCTTCAACGTGGACATGTACGAGGAGATCCACCGCAAGCTCTCGGAGGCCACCAG
GGAGCTGCAGAACACGCCCGACGCCATCCCCGAGAGTGGGGTGGAGCCCCCGCCCTTGGA
CACGGCCTGGGTGGAGGCCACTCGGAAGAAGGCCCTGCTGAAGCTGGAGAAGCTGGACAC
GGATCTGAAGAATTACAAGGGCAATTCTATCAAGGAGAGCATCAGGCGGGGCCATGACGA
CCTGGGCGACCACTATCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGTTATTCCCG
GGCCCGCGACTACTGCACCAGCGCCAAGCACGTCATTAACATGTGTCTGAACGTCATCAA
GGTCAGTGTGTACTTGCAGAATTGGTCTCATGTCTTGAGCTACGTCAGCAAGGCCGAGTC
CACCCCAGAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823687|ref|XP_603925.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823687|ref|XP_603925.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               114-301, gnl|bosTau2|chr19 (45606373-45606560)
               

               
               114-301, gnl|Hg17|chr17 (77605028-77605215)
               

               
               114-301, gnl|Mm7|chr11 (120894736-120894927)
               


               
               463-603, gnl|bosTau2|chr19 (45607277-45607417)
               

               
               463-603, gnl|Hg17|chr17 (77605837-77605977)
               

               
               463-603, gnl|Mm7|chr11 (120895594-120895734)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               114-301, gnl|bosTau2|chr19 (45606373-45606560)
               

               
               114-301, gnl|Hg17|chr17 (77605028-77605215)
               

               
               114-301, gnl|Mm7|chr11 (120894736-120894927)
               


               
               463-603, gnl|bosTau2|chr19 (45607277-45607417)
               

               
               463-603, gnl|Hg17|chr17 (77605837-77605977)
               

               
               463-603, gnl|Mm7|chr11 (120895594-120895734)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.267344)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)

	114-301, gnl\|bosTau2\|chr19 (45606373-45606560)
	114-301, gnl\|Hg17\|chr17 (77605028-77605215)
	114-301, gnl\|Mm7\|chr11 (120894736-120894927)

	463-603, gnl\|bosTau2\|chr19 (45607277-45607417)
	463-603, gnl\|Hg17\|chr17 (77605837-77605977)
	463-603, gnl\|Mm7\|chr11 (120895594-120895734)