Non-Coding RNA Search

Ss1.1-Liv1-LVRM1B120200.5

Sequence:


               
               ATCGACCTCCCAGGGAAGCGCCTCTATGTTGTTGCAGCCGTCATTGAGTCTCCAGGCGGG
GAGATGGAGGAGGCAGAGCTCACATCCTGGCGTTTCGTGTCATCTCCCTTCTCCTTGGAT
CTAAGCAAAACCAAGCGACACCTCATACCTGGGGCCCCCTTTCTGCTGCAGGCCCTGGTT
CGAGATGTGTCAGGCTCCCCAGCCGCTGGCATTCCCGTCAAGGTTTCTGCCAAGTTGTTT
TCTGGATCTGCTCCTAAAAACCAGGATTTTCAACAGAACACAGACGAGAGGGGCCACGTC
ACTGTTCCCATTGGCATCCCCAAGACCATCTCGGAAATGCAGCTCTCGGTGTCTGCAGGC
TCCCCCCATCCCGCCACAGGCACGATCATCGTGAGAGCCCCCCCGCCAAGAAGCCCCGGC
TTTCTGTCCATTGAGCAGCTGGACACTCGACCCCCTAAAGTCGGGGACACACTTAACCTA
AACCTGCGAGCCATGGGCCTCGTCGGGAGCTTCTCTCACTTCTACTACATGATCCTCTCC
CGGGGCCAGATCGTGTCTGTGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGACCTCCCAGGGAAGCGCCTCTATGTTGTTGCAGCCGTCATTGAGTCTCCAGGCGGG
GAGATGGAGGAGGCAGAGCTCACATCCTGGCGTTTCGTGTCATCTCCCTTCTCCTTGGAT
CTAAGCAAAACCAAGCGACACCTCATACCTGGGGCCCCCTTTCTGCTGCAGGCCCTGGTT
CGAGATGTGTCAGGCTCCCCAGCCGCTGGCATTCCCGTCAAGGTTTCTGCCAAGTTGTTT
TCTGGATCTGCTCCTAAAAACCAGGATTTTCAACAGAACACAGACGAGAGGGGCCACGTC
ACTGTTCCCATTGGCATCCCCAAGACCATCTCGGAAATGCAGCTCTCGGTGTCTGCAGGC
TCCCCCCATCCCGCCACAGGCACGATCATCGTGAGAGCCCCCCCGCCAAGAAGCCCCGGC
TTTCTGTCCATTGAGCAGCTGGACACTCGACCCCCTAAAGTCGGGGACACACTTAACCTA
AACCTGCGAGCCATGGGCCTCGTCGGGAGCTTCTCTCACTTCTACTACATGATCCTCTCC
CGGGGCCAGATCGTGTCTGTGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UMV1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UMV1_HUMAN

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               142-350, gnl|bosTau2|chr23 (23576976-23577186)
               

               
               142-350, gnl|canFam2|chr12 (4439509-4440080)
               

               
               142-350, gnl|canFam2|chr12 (4439509-4440080)
               

               
               142-350, gnl|hg17|chr6 (32099725-32100275)
               

               
               142-350, gnl|hg17|chr6 (32066988-32067538)
               

               
               142-350, gnl|Hg17|chr6 (32099869-32100081)
               

               
               142-350, gnl|mm7|chr17 (32826857-32826324)
               

               
               142-350, gnl|mm7|chr17 (32916180-32915651)
               

               
               142-350, gnl|Mm7|chr17 (32826720-32826516)
               

               
               142-350, gnl|monDom2|scaffold_42 (17354341-17353729)
               

               
               142-350, gnl|monDom2|scaffold_42 (17354341-17353729)
               

               
               142-350, gnl|oryCun1|scaffold_210031 (8310-8855)
               

               
               142-350, gnl|oryCun1|scaffold_210031 (8310-8855)
               

               
               142-350, gnl|panTro1|chr5 (32462301-32462851)
               

               
               142-350, gnl|panTro1|chr5 (32462301-32462851)
               

               
               142-350, gnl|rn3|chr20 (4304108-4304634)
               

               
               142-350, gnl|rn3|chr20 (4109658-4110184)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-350, gnl|bosTau2|chr23 (23576976-23577186)
               

               
               142-350, gnl|canFam2|chr12 (4439509-4440080)
               

               
               142-350, gnl|canFam2|chr12 (4439509-4440080)
               

               
               142-350, gnl|hg17|chr6 (32099725-32100275)
               

               
               142-350, gnl|hg17|chr6 (32066988-32067538)
               

               
               142-350, gnl|Hg17|chr6 (32099869-32100081)
               

               
               142-350, gnl|mm7|chr17 (32826857-32826324)
               

               
               142-350, gnl|mm7|chr17 (32916180-32915651)
               

               
               142-350, gnl|Mm7|chr17 (32826720-32826516)
               

               
               142-350, gnl|monDom2|scaffold_42 (17354341-17353729)
               

               
               142-350, gnl|monDom2|scaffold_42 (17354341-17353729)
               

               
               142-350, gnl|oryCun1|scaffold_210031 (8310-8855)
               

               
               142-350, gnl|oryCun1|scaffold_210031 (8310-8855)
               

               
               142-350, gnl|panTro1|chr5 (32462301-32462851)
               

               
               142-350, gnl|panTro1|chr5 (32462301-32462851)
               

               
               142-350, gnl|rn3|chr20 (4304108-4304634)
               

               
               142-350, gnl|rn3|chr20 (4109658-4110184)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	142-350, gnl\|bosTau2\|chr23 (23576976-23577186)
	142-350, gnl\|canFam2\|chr12 (4439509-4440080)
	142-350, gnl\|canFam2\|chr12 (4439509-4440080)
	142-350, gnl\|hg17\|chr6 (32099725-32100275)
	142-350, gnl\|hg17\|chr6 (32066988-32067538)
	142-350, gnl\|Hg17\|chr6 (32099869-32100081)
	142-350, gnl\|mm7\|chr17 (32826857-32826324)
	142-350, gnl\|mm7\|chr17 (32916180-32915651)
	142-350, gnl\|Mm7\|chr17 (32826720-32826516)
	142-350, gnl\|monDom2\|scaffold_42 (17354341-17353729)
	142-350, gnl\|monDom2\|scaffold_42 (17354341-17353729)
	142-350, gnl\|oryCun1\|scaffold_210031 (8310-8855)
	142-350, gnl\|oryCun1\|scaffold_210031 (8310-8855)
	142-350, gnl\|panTro1\|chr5 (32462301-32462851)
	142-350, gnl\|panTro1\|chr5 (32462301-32462851)
	142-350, gnl\|rn3\|chr20 (4304108-4304634)
	142-350, gnl\|rn3\|chr20 (4109658-4110184)