Non-Coding RNA Search

Ss1.1-Liv1-LVRM1C020202.5

Sequence:


               
               GAGGAGGTGGAGGTGTTGAAAGCGCTTTGCCTTGCGTTATGTTTTGCTTCTTTTCTGTGT
CCTCTGTTCACCTGTTAGCACATTGTACTTGAATTACCTCAGTTTTTTGTGACCTCATGA
GCTTTTTTGACCCCTGTATCTCTTTTTTGGTTGGGGGTTGGAGGAATGGGGAGAGTGTTC
TTTTCTGTTGCTTGTGTAAACTAAGAGCTGGTTTAATAGACGCCAGCCAGCCGAGGCTCT
CCGCGTCCCCCGGTGACGAGCCTCCCAGGTGCAGGGAGCTGGGCAGAAGGAGCAGAGGAC
TCAGGATCTGAATGTGAGGGCCGGGCCAAGGTGGGTGCCAGGGATGGGGGACCGGGGGCA
CAGCAGAATCACGGCTGGCTCTGCCCAGGGCGTGACGTCATCGCGCCCAGCATCGCCTCC
GCCTGAAACAGTCTGGAGAGAATTCCACCTTTCCTGTGGTTTGCTGGGTCACCCAGGTCT
CGGGGCCCGTGTTTCTCAGATCCTTGCAACTGCCTGGCCCCACCTCGGTGTGCATTATCA
TGGCCAAAACTGGTCTCTTTGCAGGCCGTTTGGGGACGAGCCGGCCTTGTGTGTTGTCCT
GATGGGGCGGGGGGTGTTGTTTTTCTAAAAGCTACCTCTTATGTTCGTCCAGTTCTTTTG
TTCCCTTCATGCCTCCCATCCTGCTGCTCTGCTCCCCCCGCCTCCTCTCCAGCCTCCCCT
CCCTGAATTTTTGGAAAAGCACATTTGCAATATTTGTGTTCGCTTTGGGACGGGTCTTCC
GTTTCATCTCATGCTTTATTTGTAAGATGTGTGTGTGTTTTTCTTTCCTTTCTCTCTCTG
AGAAAGTTGTGGCTGCGTTTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGGTGGAGGTGTTGAAAGCGCTTTGCCTTGCGTTATGTTTTGCTTCTTTTCTGTGT
CCTCTGTTCACCTGTTAGCACATTGTACTTGAATTACCTCAGTTTTTTGTGACCTCATGA
GCTTTTTTGACCCCTGTATCTCTTTTTTGGTTGGGGGTTGGAGGAATGGGGAGAGTGTTC
TTTTCTGTTGCTTGTGTAAACTAAGAGCTGGTTTAATAGACGCCAGCCAGCCGAGGCTCT
CCGCGTCCCCCGGTGACGAGCCTCCCAGGTGCAGGGAGCTGGGCAGAAGGAGCAGAGGAC
TCAGGATCTGAATGTGAGGGCCGGGCCAAGGTGGGTGCCAGGGATGGGGGACCGGGGGCA
CAGCAGAATCACGGCTGGCTCTGCCCAGGGCGTGACGTCATCGCGCCCAGCATCGCCTCC
GCCTGAAACAGTCTGGAGAGAATTCCACCTTTCCTGTGGTTTGCTGGGTCACCCAGGTCT
CGGGGCCCGTGTTTCTCAGATCCTTGCAACTGCCTGGCCCCACCTCGGTGTGCATTATCA
TGGCCAAAACTGGTCTCTTTGCAGGCCGTTTGGGGACGAGCCGGCCTTGTGTGTTGTCCT
GATGGGGCGGGGGGTGTTGTTTTTCTAAAAGCTACCTCTTATGTTCGTCCAGTTCTTTTG
TTCCCTTCATGCCTCCCATCCTGCTGCTCTGCTCCCCCCGCCTCCTCTCCAGCCTCCCCT
CCCTGAATTTTTGGAAAAGCACATTTGCAATATTTGTGTTCGCTTTGGGACGGGTCTTCC
GTTTCATCTCATGCTTTATTTGTAAGATGTGTGTGTGTTTTTCTTTCCTTTCTCTCTCTG
AGAAAGTTGTGGCTGCGTTTTTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               733-830, - strand, RNAz p=0.919874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               733-830, - strand, RNAz p=0.919874

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-864, gnl|bosTau2|chr15 (10901233-10900379)
               

               
               9-864, gnl|Hg17|chr11 (113627723-113628616)
               

               
               9-864, gnl|Mm7|chr9 (48628086-48627224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-864, gnl|bosTau2|chr15 (10901233-10900379)
               

               
               9-864, gnl|Hg17|chr11 (113627723-113628616)
               

               
               9-864, gnl|Mm7|chr9 (48628086-48627224)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.20816)
               

               
               nep (0.183925)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               jca (0.11396)

	9-864, gnl\|bosTau2\|chr15 (10901233-10900379)
	9-864, gnl\|Hg17\|chr11 (113627723-113628616)
	9-864, gnl\|Mm7\|chr9 (48628086-48627224)