Non-Coding RNA Search

Ss1.1-Liv1-LVRM1C040034.5

Sequence:


               
               ATTTACCTGATGGTCCAGTTGAGTGCAGATACCTGGATCCGATTTAGCATTTGGATGGCA
CTTGGTTTCCTGATATACTTCGCTTATGGCATCAGACACAGCCTGGAGGGTAATTCACGG
GATGAGGATGAGGATGAAGATACTCATTCAAACAACATTCATACAGCGGCCGAAGAAAAA
TCTGCCATTCAAGCAAATGACCATCACCAAAGACACCTGAGTTTACCTTTCATATTCCAT
GAAAAGACGAGCGAATGCTAGTGCCTGCAGGGGCCGCGCTGGTCCACAGTCTAAATGTAC
ACATCCTACGTGGAGTGAACCGTGACGGCATGTCATCGTCACACTAGGTTGTCATGGGTT
TGCTGCAGACACAGTTCACCCTAATTTATACTTCCTCACCTGGACAGCACCACCTCAGAT
GCTGAACTGTGCATCCGGGGACCCTCCTGAGCTCTCTCCTCAGTGACAAGTAGCCCCAAA
TAGCGGGAGTGTGGGAGTGTGTGTATGTGTGTTTGTGTATCTTGGGGACTGTCAGTGTTA
CAAGTTGTTGGTGTTTTGCTGTTATCCCCTTGCATTTTTCCAGTGTTGTCCTTAATTGGT
AGCATATACTGCACGTACTGAAATGGAGGTAATCGTTGAAGAGAAAAGTATTTTGTATGT
GCCGGGCATGGTTGGGGTAATGACTGTTGCTTTTCCTTGTTAGGCTTTATTAATGTTGAG
TTAGAACCTGCTAAAAATGCATTTGCCCATCCTGGGGTCCGTCATGGGTCTGGAATTGGA
GGAGGGGATAGGGAAAGAGCCTTTTCTGTACCTTGTAAACTCCAGCAGTGGGTTTAGTGC
AGATTTCTCTCTGTGAGGTATGACAGTTTGTGAAAATTTTAGCCAGTAGGAGTGTTCGTG
TCTGCAGTACTGCACAGGGCACGAGCAGCCTATGCATACCCAGATGGCAGGCACCCCTTT
GAACAGCGTGCTGTTTTCTTTGAGAACAGTAGTCTTTAAATACGAGGGCTTTCACCTGCC
ACTCCCTCCCCTCACCCCAGTTCAGTCGGGGGCTTGAGAGAGGTAGTGTGGTCCACTGGC
TCCCTTTGTGCTGGAAGATAAAGGTGGTCTCCGTGGCCAGGAAGCCTGTATAGGTGGCAA
AGATGAGGACATTTTTGAAGATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTACCTGATGGTCCAGTTGAGTGCAGATACCTGGATCCGATTTAGCATTTGGATGGCA
CTTGGTTTCCTGATATACTTCGCTTATGGCATCAGACACAGCCTGGAGGGTAATTCACGG
GATGAGGATGAGGATGAAGATACTCATTCAAACAACATTCATACAGCGGCCGAAGAAAAA
TCTGCCATTCAAGCAAATGACCATCACCAAAGACACCTGAGTTTACCTTTCATATTCCAT
GAAAAGACGAGCGAATGCTAGTGCCTGCAGGGGCCGCGCTGGTCCACAGTCTAAATGTAC
ACATCCTACGTGGAGTGAACCGTGACGGCATGTCATCGTCACACTAGGTTGTCATGGGTT
TGCTGCAGACACAGTTCACCCTAATTTATACTTCCTCACCTGGACAGCACCACCTCAGAT
GCTGAACTGTGCATCCGGGGACCCTCCTGAGCTCTCTCCTCAGTGACAAGTAGCCCCAAA
TAGCGGGAGTGTGGGAGTGTGTGTATGTGTGTTTGTGTATCTTGGGGACTGTCAGTGTTA
CAAGTTGTTGGTGTTTTGCTGTTATCCCCTTGCATTTTTCCAGTGTTGTCCTTAATTGGT
AGCATATACTGCACGTACTGAAATGGAGGTAATCGTTGAAGAGAAAAGTATTTTGTATGT
GCCGGGCATGGTTGGGGTAATGACTGTTGCTTTTCCTTGTTAGGCTTTATTAATGTTGAG
TTAGAACCTGCTAAAAATGCATTTGCCCATCCTGGGGTCCGTCATGGGTCTGGAATTGGA
GGAGGGGATAGGGAAAGAGCCTTTTCTGTACCTTGTAAACTCCAGCAGTGGGTTTAGTGC
AGATTTCTCTCTGTGAGGTATGACAGTTTGTGAAAATTTTAGCCAGTAGGAGTGTTCGTG
TCTGCAGTACTGCACAGGGCACGAGCAGCCTATGCATACCCAGATGGCAGGCACCCCTTT
GAACAGCGTGCTGTTTTCTTTGAGAACAGTAGTCTTTAAATACGAGGGCTTTCACCTGCC
ACTCCCTCCCCTCACCCCAGTTCAGTCGGGGGCTTGAGAGAGGTAGTGTGGTCCACTGGC
TCCCTTTGTGCTGGAAGATAAAGGTGGTCTCCGTGGCCAGGAAGCCTGTATAGGTGGCAA
AGATGAGGACATTTTTGAAGATCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               64-1162, gnl|bosTau2|chr27 (11520965-11519861)
               

               
               64-1162, gnl|Hg17|chr8 (17466732-17467834)
               

               
               64-1162, gnl|Mm7|chr8 (39700025-39701018)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-1162, gnl|bosTau2|chr27 (11520965-11519861)
               

               
               64-1162, gnl|Hg17|chr8 (17466732-17467834)
               

               
               64-1162, gnl|Mm7|chr8 (39700025-39701018)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.300978)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.300978)

	64-1162, gnl\|bosTau2\|chr27 (11520965-11519861)
	64-1162, gnl\|Hg17\|chr8 (17466732-17467834)
	64-1162, gnl\|Mm7\|chr8 (39700025-39701018)