Ss1.1-Liv1-LVRM1C050033.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGTCCTCCGCTGGCCGACCGGGAAGTAGGTGAAGGCTAGGCGATGGCAATTTTGGAGG CCCTGGTCCCGGGTAGACCCACGGCCACGATGCCCCCGCGGTAGACCGGACCAGGGTAGC GGGCTCCGGGTCCCGAGGGATGGAGGGGTCTAAGACATCCAGCAGCACCATGCAGGTGAG CTTCGTGTGTCAGCGCTGCAGCCAGCCCCTGAAACTGGACACGAGCTTCAAGATCCTGGA TCGTGTTACCATTCAGGAGCTTACAGCTCCATTACTTGCCACAGCCCAGGTGAAACCAGG AGAGACCCAGGAGGAAGAGGCTAACCCAGGAGAGGAGCCATTTATTGAAACTCGCCAGGA TGGTGTCTCTCGCAGATTCATCCCCCCAGCCAGGATGATGTCTACAGAAAGTGCCAACAG CTTCACTCTGATCGGGGAGGCATCCGATGGTGGCACCATGGAGAACCTCAGCCGAAGACT GAAGGTCACTGGGGATCTTTTTGACATCATGTCAGGCCAGACAGATGTGGATCACCCGCT GTGTGAGGAATGCACAGATACTCTTTTAGACCAGCTGGACACTCAGCTCAATGTCACTGA AAATGAGTGTCAGAACTACAAACGCTGTTTGGAGATCTTAGAGCAAATGCATGAAGATGA CAGCGAACAGCTCCGGATGGAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGTCCTCCGCTGGCCGACCGGGAAGTAGGTGAAGGCTAGGCGATGGCAATTTTGGAGG CCCTGGTCCCGGGTAGACCCACGGCCACGATGCCCCCGCGGTAGACCGGACCAGGGTAGC GGGCTCCGGGTCCCGAGGGATGGAGGGGTCTAAGACATCCAGCAGCACCATGCAGGTGAG CTTCGTGTGTCAGCGCTGCAGCCAGCCCCTGAAACTGGACACGAGCTTCAAGATCCTGGA TCGTGTTACCATTCAGGAGCTTACAGCTCCATTACTTGCCACAGCCCAGGTGAAACCAGG AGAGACCCAGGAGGAAGAGGCTAACCCAGGAGAGGAGCCATTTATTGAAACTCGCCAGGA TGGTGTCTCTCGCAGATTCATCCCCCCAGCCAGGATGATGTCTACAGAAAGTGCCAACAG CTTCACTCTGATCGGGGAGGCATCCGATGGTGGCACCATGGAGAACCTCAGCCGAAGACT GAAGGTCACTGGGGATCTTTTTGACATCATGTCAGGCCAGACAGATGTGGATCACCCGCT GTGTGAGGAATGCACAGATACTCTTTTAGACCAGCTGGACACTCAGCTCAATGTCACTGA AAATGAGTGTCAGAACTACAAACGCTGTTTGGAGATCTTAGAGCAAATGCATGAAGATGA CAGCGAACAGCTCCGGATGGAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-273, gnl|bosTau2|chr20 (10556790-10556527) | |
| 1-273, gnl|Hg17|chr17 (38229832-38229292) | |
| 1-273, gnl|Mm7|chr11 (101411305-101410767) | |
| 136-269, gnl|bosTau2|chr19 (38920420-38920553) | |
| 136-269, gnl|Hg17|chr17 (38229425-38229289) | |
| 136-269, gnl|Mm7|chr11 (101410897-101410764) | |
| 483-621, gnl|bosTau2|chr19 (38924491-38924629) | |
| 483-621, gnl|canFam2|chr9 (23526987-23526838) | |
| 483-621, gnl|danRer3|chr12 (9589311-9589162) | |
| 483-621, gnl|dasNov1|scaffold_30821 (3412-3550) | |
| 483-621, gnl|echTel1|scaffold_94221 (2593-2444) | |
| 483-621, gnl|fr1|chrUn (226234953-226235100) | |
| 483-621, gnl|galGal2|chr27_random (138984-138835) | |
| 483-621, gnl|hg17|chr17 (38224083-38224232) | |
| 483-621, gnl|Hg17|chr17 (38224226-38224088) | |
| 483-621, gnl|loxAfr1|scaffold_5870 (50909-51058) | |
| 483-621, gnl|mm7|chr11 (101404329-101404478) | |
| 483-621, gnl|Mm7|chr11 (101404472-101404334) | |
| 483-621, gnl|monDom2|scaffold_18 (53359889-53360037) | |
| 483-621, gnl|oryCun1|scaffold_197065 (49507-49656) | |
| 483-621, gnl|panTro1|chr19 (41412629-41412778) | |
| 483-621, gnl|rheMac2|chr16 (52940181-52940330) | |
| 483-621, gnl|rn3|chr10 (90339400-90339549) | |
| 483-621, gnl|tetNig1|chr2 (6450048-6450195) | |
| 483-621, gnl|xenTro1|scaffold_92 (375074-374929) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-273, gnl|bosTau2|chr20 (10556790-10556527) | |
| 1-273, gnl|Hg17|chr17 (38229832-38229292) | |
| 1-273, gnl|Mm7|chr11 (101411305-101410767) | |
| 136-269, gnl|bosTau2|chr19 (38920420-38920553) | |
| 136-269, gnl|Hg17|chr17 (38229425-38229289) | |
| 136-269, gnl|Mm7|chr11 (101410897-101410764) | |
| 483-621, gnl|bosTau2|chr19 (38924491-38924629) | |
| 483-621, gnl|canFam2|chr9 (23526987-23526838) | |
| 483-621, gnl|danRer3|chr12 (9589311-9589162) | |
| 483-621, gnl|dasNov1|scaffold_30821 (3412-3550) | |
| 483-621, gnl|echTel1|scaffold_94221 (2593-2444) | |
| 483-621, gnl|fr1|chrUn (226234953-226235100) | |
| 483-621, gnl|galGal2|chr27_random (138984-138835) | |
| 483-621, gnl|hg17|chr17 (38224083-38224232) | |
| 483-621, gnl|Hg17|chr17 (38224226-38224088) | |
| 483-621, gnl|loxAfr1|scaffold_5870 (50909-51058) | |
| 483-621, gnl|mm7|chr11 (101404329-101404478) | |
| 483-621, gnl|Mm7|chr11 (101404472-101404334) | |
| 483-621, gnl|monDom2|scaffold_18 (53359889-53360037) | |
| 483-621, gnl|oryCun1|scaffold_197065 (49507-49656) | |
| 483-621, gnl|panTro1|chr19 (41412629-41412778) | |
| 483-621, gnl|rheMac2|chr16 (52940181-52940330) | |
| 483-621, gnl|rn3|chr10 (90339400-90339549) | |
| 483-621, gnl|tetNig1|chr2 (6450048-6450195) | |
| 483-621, gnl|xenTro1|scaffold_92 (375074-374929) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cbl (0.344392) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.344392) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| cty (0.10408) |