Non-Coding RNA Search

Ss1.1-Liv1-LVRM1C080037.5

Sequence:


               
               AAAGTTTCCCGGGCGGCAGCGGCGACTGCGCCTCGCGTGAGCGATGGCCGCGGAGCTGAG
CATGGGGCCCGAGCTGCCCACCAGCCCGCTGGCCATGGAGTACGTCAACGACTTCGACCT
GCTCAAGTTCGACGTAAAGAAGGAGCCGCTGGGGCGCGCGGAGCGCCCGGGCCGGCCCTG
CACGCGCCTGCAGCCAGCTGGCTCGGTGTCGTCTACACCTCTCAGCACGCCGTGCAGCTC
GGTGCCCTCGTCGCCCAGCTTCAGCCCCACCGAACAGAAGACCCACCTCGAGGACCTGTA
CTGGATGGCGAGCAACTACCAGCAGATGAACCCCGAGGCGCTCAACCTGACGCCCGAAGA
CGCGGTGGAGGCGCTCATCGGCTCGCACCCAGTGCCACAGCCGTTGCAGAGCTTCGACGG
CTTCCGAGGCGCGCACCACCACCATCACCATCATCACCAAGCATCGCCACCGCCGTCCAG
CGCGGCCAGCCCCGCGCAGCAGCTGCCCACCAGCCATCCCGGGCCTGGGCCGCACGCGGC
GGCCACCGCGACGGCGGCTGGCGGTAGCGGCAGCGTGGAGGACCGCTTCTCTGACGACCA
GCTCGTGTCCATGTCCGTGCGCGAGCTGAACCGCCACCTGCGGGGCTTCACCAAGGACGA
GGTGATCCGCCTGAAGCAGAAGCGGCGGACCCTGAAGAACCGGGGCTACGCCCAGTCGTG
CAGGTATAAACGCGTCCAGCAGAAGCACCACCTGGAGAATGAGAAGACACAGCTCATTCA
GCAGGTGGAGCAGCTTAAGCAGGAGGTGTCCCGGCTGGCCCGCGAAAGAGACGCCTACAA
GGTCAAGTGTGAGAAACTCGCCAACTCCGGCTTCAGGGAGGCGGGCTCCACCAGCGACAG
CCCCTCCTCTCCCGAGTTCTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTTTCCCGGGCGGCAGCGGCGACTGCGCCTCGCGTGAGCGATGGCCGCGGAGCTGAG
CATGGGGCCCGAGCTGCCCACCAGCCCGCTGGCCATGGAGTACGTCAACGACTTCGACCT
GCTCAAGTTCGACGTAAAGAAGGAGCCGCTGGGGCGCGCGGAGCGCCCGGGCCGGCCCTG
CACGCGCCTGCAGCCAGCTGGCTCGGTGTCGTCTACACCTCTCAGCACGCCGTGCAGCTC
GGTGCCCTCGTCGCCCAGCTTCAGCCCCACCGAACAGAAGACCCACCTCGAGGACCTGTA
CTGGATGGCGAGCAACTACCAGCAGATGAACCCCGAGGCGCTCAACCTGACGCCCGAAGA
CGCGGTGGAGGCGCTCATCGGCTCGCACCCAGTGCCACAGCCGTTGCAGAGCTTCGACGG
CTTCCGAGGCGCGCACCACCACCATCACCATCATCACCAAGCATCGCCACCGCCGTCCAG
CGCGGCCAGCCCCGCGCAGCAGCTGCCCACCAGCCATCCCGGGCCTGGGCCGCACGCGGC
GGCCACCGCGACGGCGGCTGGCGGTAGCGGCAGCGTGGAGGACCGCTTCTCTGACGACCA
GCTCGTGTCCATGTCCGTGCGCGAGCTGAACCGCCACCTGCGGGGCTTCACCAAGGACGA
GGTGATCCGCCTGAAGCAGAAGCGGCGGACCCTGAAGAACCGGGGCTACGCCCAGTCGTG
CAGGTATAAACGCGTCCAGCAGAAGCACCACCTGGAGAATGAGAAGACACAGCTCATTCA
GCAGGTGGAGCAGCTTAAGCAGGAGGTGTCCCGGCTGGCCCGCGAAAGAGACGCCTACAA
GGTCAAGTGTGAGAAACTCGCCAACTCCGGCTTCAGGGAGGCGGGCTCCACCAGCGACAG
CCCCTCCTCTCCCGAGTTCTTTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               MAFB_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               MAFB_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               670-829, - strand, RNAz p=0.924052

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               670-829, - strand, RNAz p=0.924052

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               430-924, gnl|bosTau2|chr13 (50963066-50962572)
               

               
               430-924, gnl|Hg17|chr20 (38750431-38749937)
               

               
               430-924, gnl|Mm7|chr2 (160107093-160106599)
               


               
               570-842, gnl|bosTau2|chr10 (12417423-12417694)
               

               
               570-842, gnl|Hg17|chr14 (23620621-23620350)
               

               
               570-842, gnl|Mm7|chr14 (50387759-50387488)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               430-924, gnl|bosTau2|chr13 (50963066-50962572)
               

               
               430-924, gnl|Hg17|chr20 (38750431-38749937)
               

               
               430-924, gnl|Mm7|chr2 (160107093-160106599)
               


               
               570-842, gnl|bosTau2|chr10 (12417423-12417694)
               

               
               570-842, gnl|Hg17|chr14 (23620621-23620350)
               

               
               570-842, gnl|Mm7|chr14 (50387759-50387488)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	430-924, gnl\|bosTau2\|chr13 (50963066-50962572)
	430-924, gnl\|Hg17\|chr20 (38750431-38749937)
	430-924, gnl\|Mm7\|chr2 (160107093-160106599)

	570-842, gnl\|bosTau2\|chr10 (12417423-12417694)
	570-842, gnl\|Hg17\|chr14 (23620621-23620350)
	570-842, gnl\|Mm7\|chr14 (50387759-50387488)