Ss1.1-Liv1-LVRM1C090100.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGACGGCCGGCGGCGGGCGGCGGCGGCGGGGAGAACTACGATGATCCACACAAAACCCC TGCCTCCCCAGTTGTCCACATCAGGGGCCTGATTGACGGCGTGGTGGAAGCTGACCTTGT GGAGGCCTTGCAGGAGTTTGGACCCATTAGCTATGTGGTGGTAATGCCTAAAAAGAGACA AGCGTTGGTGGAATTTGAAGATGTGTTGGGGGCTTGCAACGCCGTGAACTACGCAGCAGA CAACCAAATTTACATTGCGGGCCACCCAGCTTTTGTCAATTACTCTACCAGCCAGAAGAT CTCCCGCCCTGGGGACTCAGATGACTCTCGGAGCGTCAACAGTGTGCTTCTCTTTACCAT CTTGAACCCTATCTATTCTATTACCACGGATGTACTTTATACTATCTGTAACCCTTGTGG TCCTGTCCAGAGAATCGTCATTTTCCGGAAGAATGGAGTCCAGGCCATGGTGGAATTTGA CTCTGTGCAGAGTGCCCAGCGAGCCAAGGCCTCACTCAATGGGGCTGATATCTATTCAGG ATGTTGCACTCTGAAGATCGAATATGCGAAGCCTACACGCTTGAATGTGTTCAAGAATGA TCAGGATACTTGGGACTACACAAACCCAAATCTCAGTGGACAAGGTGACCCTGGCAGCAA CCCTAACAAACGCCAGAGGCAGCCCCCTCTCCTGGGAGATCACCCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGACGGCCGGCGGCGGGCGGCGGCGGCGGGGAGAACTACGATGATCCACACAAAACCCC TGCCTCCCCAGTTGTCCACATCAGGGGCCTGATTGACGGCGTGGTGGAAGCTGACCTTGT GGAGGCCTTGCAGGAGTTTGGACCCATTAGCTATGTGGTGGTAATGCCTAAAAAGAGACA AGCGTTGGTGGAATTTGAAGATGTGTTGGGGGCTTGCAACGCCGTGAACTACGCAGCAGA CAACCAAATTTACATTGCGGGCCACCCAGCTTTTGTCAATTACTCTACCAGCCAGAAGAT CTCCCGCCCTGGGGACTCAGATGACTCTCGGAGCGTCAACAGTGTGCTTCTCTTTACCAT CTTGAACCCTATCTATTCTATTACCACGGATGTACTTTATACTATCTGTAACCCTTGTGG TCCTGTCCAGAGAATCGTCATTTTCCGGAAGAATGGAGTCCAGGCCATGGTGGAATTTGA CTCTGTGCAGAGTGCCCAGCGAGCCAAGGCCTCACTCAATGGGGCTGATATCTATTCAGG ATGTTGCACTCTGAAGATCGAATATGCGAAGCCTACACGCTTGAATGTGTTCAAGAATGA TCAGGATACTTGGGACTACACAAACCCAAATCTCAGTGGACAAGGTGACCCTGGCAGCAA CCCTAACAAACGCCAGAGGCAGCCCCCTCTCCTGGGAGATCACCCCGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 149-389, gnl|bosTau2|chr18 (42174784-42175024) | |
| 149-389, gnl|canFam2|chr1 (117180737-117180501) | |
| 149-389, gnl|canFam2|chr1 (117180737-117180501) | |
| 149-389, gnl|danRer3|chr5 (40859756-40859517) | |
| 149-389, gnl|danRer3|chr5 (40859756-40859520) | |
| 149-389, gnl|echTel1|scaffold_224764 (12135-12371) | |
| 149-389, gnl|echTel1|scaffold_224764 (12135-12371) | |
| 149-389, gnl|fr1|chrUn (98427290-98427051) | |
| 149-389, gnl|fr1|chrUn (98427290-98427054) | |
| 149-389, gnl|hg17|chr15 (32569639-32569878) | |
| 149-389, gnl|Hg17|chr19 (44028572-44028332) | |
| 149-389, gnl|hg17|chr6 (7427474-7427715) | |
| 149-389, gnl|mm7|chr7 (25747982-25747743) | |
| 149-389, gnl|mm7|chr7 (25747982-25747743) | |
| 149-389, gnl|Mm7|chr7 (25747743-25747983) | |
| 149-389, gnl|monDom2|scaffold_139 (817536-817775) | |
| 149-389, gnl|monDom2|scaffold_139 (817536-817772) | |
| 149-389, gnl|oryCun1|scaffold_173353 (41643-41407) | |
| 149-389, gnl|oryCun1|scaffold_173353 (41643-41402) | |
| 149-389, gnl|panTro1|chr16 (32336727-32336965) | |
| 149-389, gnl|panTro1|chr5 (7803569-7803810) | |
| 149-389, gnl|rheMac2|chr19 (45183784-45184020) | |
| 149-389, gnl|rheMac2|chr4 (7389128-7389368) | |
| 149-389, gnl|rn3|chr3 (1377969-1377730) | |
| 149-389, gnl|rn3|chr3 (1377969-1377726) | |
| 149-389, gnl|tetNig1|chr16 (6812259-6812020) | |
| 149-389, gnl|tetNig1|chr16 (6812259-6812023) | |
| 149-389, gnl|xenTro1|scaffold_1700 (39297-39539) | |
| 149-389, gnl|xenTro1|scaffold_1700 (39297-39543) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 149-389, gnl|bosTau2|chr18 (42174784-42175024) | |
| 149-389, gnl|canFam2|chr1 (117180737-117180501) | |
| 149-389, gnl|canFam2|chr1 (117180737-117180501) | |
| 149-389, gnl|danRer3|chr5 (40859756-40859517) | |
| 149-389, gnl|danRer3|chr5 (40859756-40859520) | |
| 149-389, gnl|echTel1|scaffold_224764 (12135-12371) | |
| 149-389, gnl|echTel1|scaffold_224764 (12135-12371) | |
| 149-389, gnl|fr1|chrUn (98427290-98427051) | |
| 149-389, gnl|fr1|chrUn (98427290-98427054) | |
| 149-389, gnl|hg17|chr15 (32569639-32569878) | |
| 149-389, gnl|Hg17|chr19 (44028572-44028332) | |
| 149-389, gnl|hg17|chr6 (7427474-7427715) | |
| 149-389, gnl|mm7|chr7 (25747982-25747743) | |
| 149-389, gnl|mm7|chr7 (25747982-25747743) | |
| 149-389, gnl|Mm7|chr7 (25747743-25747983) | |
| 149-389, gnl|monDom2|scaffold_139 (817536-817775) | |
| 149-389, gnl|monDom2|scaffold_139 (817536-817772) | |
| 149-389, gnl|oryCun1|scaffold_173353 (41643-41407) | |
| 149-389, gnl|oryCun1|scaffold_173353 (41643-41402) | |
| 149-389, gnl|panTro1|chr16 (32336727-32336965) | |
| 149-389, gnl|panTro1|chr5 (7803569-7803810) | |
| 149-389, gnl|rheMac2|chr19 (45183784-45184020) | |
| 149-389, gnl|rheMac2|chr4 (7389128-7389368) | |
| 149-389, gnl|rn3|chr3 (1377969-1377730) | |
| 149-389, gnl|rn3|chr3 (1377969-1377726) | |
| 149-389, gnl|tetNig1|chr16 (6812259-6812020) | |
| 149-389, gnl|tetNig1|chr16 (6812259-6812023) | |
| 149-389, gnl|xenTro1|scaffold_1700 (39297-39539) | |
| 149-389, gnl|xenTro1|scaffold_1700 (39297-39543) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cov (0.264306) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) |