Ss1.1-Liv1-LVRM1D010004.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCTGCCGCGGAGTGCGATGTGGTAATGGCGGCGACCGGGCCAGAGCTGCTCGACGAC GAGGAAGCGAAGAGGGAAGCAGAGTCTTTTAAGGAACAAGGAAATGCATACTATGCCAAG AAAGATTACAATGAAGCTTATAATTATTATACGAAAGCCATAGATATGTGTCCTAAAAAT GCTAGCTATTACGGGAATCGAGCAGCCACCTTGATGATGCTTGGAAGGTTCCGGGAAGCT CTTGGAGATGCACAGCAGTCAGTGAGATTGGATGACAGCTTCGTCCGGGGTCATCTACGA GAGGGCAAATGCCACCTGTCCCTAGGGAATGCCATGGCAGCATGTCGTAGTTTCCAGAGA GCCCTAGAGCTGGATCACAAAAATGCTCAGGCACAGCAGGAGTTCAAGAATGCTAATGCA GTCATAGAATATGAAAAAATAGCAGAAACGGATTTTGAGAAGCGGGATTTTCGGAAGGTT GTTTTTTTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGCTTCAAAATCCT TAAAGCAGAATGTTTAGCAATGCTAGGTCGTTATCCAGAAGCACAGTCTGTGGCCAGCGA CATTTTACGAATGGATTCCACCAACGCAGATGCTCTGTACGTCCGAGGTCTTTGCCTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCTGCCGCGGAGTGCGATGTGGTAATGGCGGCGACCGGGCCAGAGCTGCTCGACGAC GAGGAAGCGAAGAGGGAAGCAGAGTCTTTTAAGGAACAAGGAAATGCATACTATGCCAAG AAAGATTACAATGAAGCTTATAATTATTATACGAAAGCCATAGATATGTGTCCTAAAAAT GCTAGCTATTACGGGAATCGAGCAGCCACCTTGATGATGCTTGGAAGGTTCCGGGAAGCT CTTGGAGATGCACAGCAGTCAGTGAGATTGGATGACAGCTTCGTCCGGGGTCATCTACGA GAGGGCAAATGCCACCTGTCCCTAGGGAATGCCATGGCAGCATGTCGTAGTTTCCAGAGA GCCCTAGAGCTGGATCACAAAAATGCTCAGGCACAGCAGGAGTTCAAGAATGCTAATGCA GTCATAGAATATGAAAAAATAGCAGAAACGGATTTTGAGAAGCGGGATTTTCGGAAGGTT GTTTTTTTGCATGGACCGTGCCCTAGAATTTGCCCCTGCCTGCCATCGCTTCAAAATCCT TAAAGCAGAATGTTTAGCAATGCTAGGTCGTTATCCAGAAGCACAGTCTGTGGCCAGCGA CATTTTACGAATGGATTCCACCAACGCAGATGCTCTGTACGTCCGAGGTCTTTGCCTTTA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 476-597, - strand, RNAz p=0.991872 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 476-597, - strand, RNAz p=0.991872 |
| Aligned organism(s): 101 entry(ies) | More info |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
| 161-289, gnl|bosTau2|chr23 (3959-4087) | |
| 161-289, gnl|canFam2|chr11 (29767261-29767376) | |
| 161-289, gnl|canFam2|chr11 (29767382-29767270) | |
| 161-289, gnl|canFam2|chr9 (24188580-24188375) | |
| 161-289, gnl|danRer3|chr3 (5919482-5919364) | |
| 161-289, gnl|danRer3|chr3 (5919500-5919328) | |
| 161-289, gnl|danRer3|chr3 (5919358-5919474) | |
| 161-289, gnl|dasNov1|scaffold_72060 (4574-4455) | |
| 161-289, gnl|dasNov1|scaffold_72060 (4452-4565) | |
| 161-289, gnl|echTel1|scaffold_300147 (11578-11459) | |
| 161-289, gnl|echTel1|scaffold_300147 (11591-11431) | |
| 161-289, gnl|echTel1|scaffold_300147 (11453-11569) | |
| 161-289, gnl|fr1|chrUn (96686146-96686264) | |
| 161-289, gnl|fr1|chrUn (96686125-96686269) | |
| 161-289, gnl|fr1|chrUn (96686270-96686182) | |
| 161-289, gnl|galGal2|chr27_random (419425-419306) | |
| 161-289, gnl|galGal2|chr27_random (419433-419256) | |
| 161-289, gnl|galGal2|chr27_random (419300-419416) | |
| 161-289, gnl|hg17|chr1 (63538662-63538781) | |
| 161-289, gnl|hg17|chr17 (37402645-37402815) | |
| 161-289, gnl|Hg17|chr17 (37402786-37402654) | |
| 161-289, gnl|hg17|chr6 (139701098-139701211) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2759-2878) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2746-2912) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2884-2768) | |
| 161-289, gnl|mm7|chr11 (100708227-100708346) | |
| 161-289, gnl|mm7|chr11 (100708214-100708378) | |
| 161-289, gnl|mm7|chr11 (100708349-100708238) | |
| 161-289, gnl|Mm7|chr11 (100708351-100708223) | |
| 161-289, gnl|monDom2|scaffold_18 (52311351-52311514) | |
| 161-289, gnl|monDom2|scaffold_3 (49844403-49844284) | |
| 161-289, gnl|monDom2|scaffold_3 (49844278-49844394) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7701-7582) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7714-7548) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7579-7692) | |
| 161-289, gnl|panTro1|chr1 (61875171-61875290) | |
| 161-289, gnl|panTro1|chr19 (40603988-40604158) | |
| 161-289, gnl|panTro1|chr5 (142528766-142528879) | |
| 161-289, gnl|rheMac2|chr1 (66155166-66155285) | |
| 161-289, gnl|rheMac2|chr16 (52104080-52104251) | |
| 161-289, gnl|rheMac2|chr4 (124487341-124487224) | |
| 161-289, gnl|rn3|chr10 (89557370-89557489) | |
| 161-289, gnl|rn3|chr10 (89557357-89557520) | |
| 161-289, gnl|rn3|chr10 (89557492-89557381) | |
| 161-289, gnl|tetNig1|chr2_random (45067-45219) | |
| 161-289, gnl|tetNig1|chrUn_random (135907076-135906958) | |
| 161-289, gnl|tetNig1|chrUn_random (135906952-135907066) | |
| 161-289, gnl|xenTro1|scaffold_394 (893188-893298) | |
| 161-289, gnl|xenTro1|scaffold_394 (893179-893340) | |
| 161-289, gnl|xenTro1|scaffold_394 (892537-892431) | |
| 476-597, gnl|bosTau2|chr23 (9485-9605) | |
| 476-597, gnl|canFam2|chr11 (29766953-29767067) | |
| 476-597, gnl|canFam2|chr11 (29767071-29766953) | |
| 476-597, gnl|canFam2|chr9 (24194564-24194478) | |
| 476-597, gnl|danRer3|chr3 (5928662-5928547) | |
| 476-597, gnl|danRer3|chr3 (5928666-5928588) | |
| 476-597, gnl|danRer3|chr3 (5928543-5928661) | |
| 476-597, gnl|dasNov1|scaffold_6296 (89181-89265) | |
| 476-597, gnl|dasNov1|scaffold_98447 (2404-2288) | |
| 476-597, gnl|dasNov1|scaffold_98447 (2284-2404) | |
| 476-597, gnl|echTel1|scaffold_300147 (17476-17360) | |
| 476-597, gnl|echTel1|scaffold_300147 (17487-17401) | |
| 476-597, gnl|echTel1|scaffold_300147 (17356-17476) | |
| 476-597, gnl|fr1|chrUn (96685401-96685516) | |
| 476-597, gnl|fr1|chrUn (96685397-96685475) | |
| 476-597, gnl|fr1|chrUn (96685520-96685402) | |
| 476-597, gnl|galGal2|chr27_random (421497-421384) | |
| 476-597, gnl|galGal2|chr27_random (421507-421425) | |
| 476-597, gnl|galGal2|chr27_random (421380-421497) | |
| 476-597, gnl|hg17|chr1 (63538354-63538470) | |
| 476-597, gnl|hg17|chr17 (37395798-37395884) | |
| 476-597, gnl|Hg17|chr17 (37395928-37395808) | |
| 476-597, gnl|hg17|chr6 (139701410-139701531) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18823-18939) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18812-18898) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18943-18826) | |
| 476-597, gnl|mm7|chr11 (100701895-100702011) | |
| 476-597, gnl|mm7|chr11 (100701884-100701970) | |
| 476-597, gnl|mm7|chr11 (100702015-100701895) | |
| 476-597, gnl|Mm7|chr11 (100702014-100701894) | |
| 476-597, gnl|monDom2|scaffold_18 (52304762-52304848) | |
| 476-597, gnl|monDom2|scaffold_3 (49844713-49844597) | |
| 476-597, gnl|monDom2|scaffold_3 (49844593-49844713) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15093-15209) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15082-15168) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15213-15093) | |
| 476-597, gnl|panTro1|chr1 (61874861-61874978) | |
| 476-597, gnl|panTro1|chr19 (40597152-40597238) | |
| 476-597, gnl|panTro1|chr5 (142529078-142529199) | |
| 476-597, gnl|rheMac2|chr1 (66154857-66154972) | |
| 476-597, gnl|rheMac2|chr16 (52096930-52097016) | |
| 476-597, gnl|rheMac2|chr4 (124487025-124486904) | |
| 476-597, gnl|rn3|chr10 (89550206-89550322) | |
| 476-597, gnl|rn3|chr10 (89550195-89550281) | |
| 476-597, gnl|rn3|chr10 (89550326-89550209) | |
| 476-597, gnl|tetNig1|chr2_random (43887-43973) | |
| 476-597, gnl|tetNig1|chrUn_random (135907760-135907645) | |
| 476-597, gnl|tetNig1|chrUn_random (135907641-135907759) | |
| 476-597, gnl|xenTro1|scaffold_394 (889963-890079) | |
| 476-597, gnl|xenTro1|scaffold_394 (889953-890038) | |
| 476-597, gnl|xenTro1|scaffold_394 (890083-889966) |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-289, gnl|bosTau2|chr23 (3959-4087) | |
| 161-289, gnl|canFam2|chr11 (29767261-29767376) | |
| 161-289, gnl|canFam2|chr11 (29767382-29767270) | |
| 161-289, gnl|canFam2|chr9 (24188580-24188375) | |
| 161-289, gnl|danRer3|chr3 (5919482-5919364) | |
| 161-289, gnl|danRer3|chr3 (5919500-5919328) | |
| 161-289, gnl|danRer3|chr3 (5919358-5919474) | |
| 161-289, gnl|dasNov1|scaffold_72060 (4574-4455) | |
| 161-289, gnl|dasNov1|scaffold_72060 (4452-4565) | |
| 161-289, gnl|echTel1|scaffold_300147 (11578-11459) | |
| 161-289, gnl|echTel1|scaffold_300147 (11591-11431) | |
| 161-289, gnl|echTel1|scaffold_300147 (11453-11569) | |
| 161-289, gnl|fr1|chrUn (96686146-96686264) | |
| 161-289, gnl|fr1|chrUn (96686125-96686269) | |
| 161-289, gnl|fr1|chrUn (96686270-96686182) | |
| 161-289, gnl|galGal2|chr27_random (419425-419306) | |
| 161-289, gnl|galGal2|chr27_random (419433-419256) | |
| 161-289, gnl|galGal2|chr27_random (419300-419416) | |
| 161-289, gnl|hg17|chr1 (63538662-63538781) | |
| 161-289, gnl|hg17|chr17 (37402645-37402815) | |
| 161-289, gnl|Hg17|chr17 (37402786-37402654) | |
| 161-289, gnl|hg17|chr6 (139701098-139701211) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2759-2878) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2746-2912) | |
| 161-289, gnl|loxAfr1|scaffold_34254 (2884-2768) | |
| 161-289, gnl|mm7|chr11 (100708227-100708346) | |
| 161-289, gnl|mm7|chr11 (100708214-100708378) | |
| 161-289, gnl|mm7|chr11 (100708349-100708238) | |
| 161-289, gnl|Mm7|chr11 (100708351-100708223) | |
| 161-289, gnl|monDom2|scaffold_18 (52311351-52311514) | |
| 161-289, gnl|monDom2|scaffold_3 (49844403-49844284) | |
| 161-289, gnl|monDom2|scaffold_3 (49844278-49844394) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7701-7582) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7714-7548) | |
| 161-289, gnl|oryCun1|scaffold_197214 (7579-7692) | |
| 161-289, gnl|panTro1|chr1 (61875171-61875290) | |
| 161-289, gnl|panTro1|chr19 (40603988-40604158) | |
| 161-289, gnl|panTro1|chr5 (142528766-142528879) | |
| 161-289, gnl|rheMac2|chr1 (66155166-66155285) | |
| 161-289, gnl|rheMac2|chr16 (52104080-52104251) | |
| 161-289, gnl|rheMac2|chr4 (124487341-124487224) | |
| 161-289, gnl|rn3|chr10 (89557370-89557489) | |
| 161-289, gnl|rn3|chr10 (89557357-89557520) | |
| 161-289, gnl|rn3|chr10 (89557492-89557381) | |
| 161-289, gnl|tetNig1|chr2_random (45067-45219) | |
| 161-289, gnl|tetNig1|chrUn_random (135907076-135906958) | |
| 161-289, gnl|tetNig1|chrUn_random (135906952-135907066) | |
| 161-289, gnl|xenTro1|scaffold_394 (893188-893298) | |
| 161-289, gnl|xenTro1|scaffold_394 (893179-893340) | |
| 161-289, gnl|xenTro1|scaffold_394 (892537-892431) | |
| 476-597, gnl|bosTau2|chr23 (9485-9605) | |
| 476-597, gnl|canFam2|chr11 (29766953-29767067) | |
| 476-597, gnl|canFam2|chr11 (29767071-29766953) | |
| 476-597, gnl|canFam2|chr9 (24194564-24194478) | |
| 476-597, gnl|danRer3|chr3 (5928662-5928547) | |
| 476-597, gnl|danRer3|chr3 (5928666-5928588) | |
| 476-597, gnl|danRer3|chr3 (5928543-5928661) | |
| 476-597, gnl|dasNov1|scaffold_6296 (89181-89265) | |
| 476-597, gnl|dasNov1|scaffold_98447 (2404-2288) | |
| 476-597, gnl|dasNov1|scaffold_98447 (2284-2404) | |
| 476-597, gnl|echTel1|scaffold_300147 (17476-17360) | |
| 476-597, gnl|echTel1|scaffold_300147 (17487-17401) | |
| 476-597, gnl|echTel1|scaffold_300147 (17356-17476) | |
| 476-597, gnl|fr1|chrUn (96685401-96685516) | |
| 476-597, gnl|fr1|chrUn (96685397-96685475) | |
| 476-597, gnl|fr1|chrUn (96685520-96685402) | |
| 476-597, gnl|galGal2|chr27_random (421497-421384) | |
| 476-597, gnl|galGal2|chr27_random (421507-421425) | |
| 476-597, gnl|galGal2|chr27_random (421380-421497) | |
| 476-597, gnl|hg17|chr1 (63538354-63538470) | |
| 476-597, gnl|hg17|chr17 (37395798-37395884) | |
| 476-597, gnl|Hg17|chr17 (37395928-37395808) | |
| 476-597, gnl|hg17|chr6 (139701410-139701531) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18823-18939) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18812-18898) | |
| 476-597, gnl|loxAfr1|scaffold_18510 (18943-18826) | |
| 476-597, gnl|mm7|chr11 (100701895-100702011) | |
| 476-597, gnl|mm7|chr11 (100701884-100701970) | |
| 476-597, gnl|mm7|chr11 (100702015-100701895) | |
| 476-597, gnl|Mm7|chr11 (100702014-100701894) | |
| 476-597, gnl|monDom2|scaffold_18 (52304762-52304848) | |
| 476-597, gnl|monDom2|scaffold_3 (49844713-49844597) | |
| 476-597, gnl|monDom2|scaffold_3 (49844593-49844713) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15093-15209) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15082-15168) | |
| 476-597, gnl|oryCun1|scaffold_203567 (15213-15093) | |
| 476-597, gnl|panTro1|chr1 (61874861-61874978) | |
| 476-597, gnl|panTro1|chr19 (40597152-40597238) | |
| 476-597, gnl|panTro1|chr5 (142529078-142529199) | |
| 476-597, gnl|rheMac2|chr1 (66154857-66154972) | |
| 476-597, gnl|rheMac2|chr16 (52096930-52097016) | |
| 476-597, gnl|rheMac2|chr4 (124487025-124486904) | |
| 476-597, gnl|rn3|chr10 (89550206-89550322) | |
| 476-597, gnl|rn3|chr10 (89550195-89550281) | |
| 476-597, gnl|rn3|chr10 (89550326-89550209) | |
| 476-597, gnl|tetNig1|chr2_random (43887-43973) | |
| 476-597, gnl|tetNig1|chrUn_random (135907760-135907645) | |
| 476-597, gnl|tetNig1|chrUn_random (135907641-135907759) | |
| 476-597, gnl|xenTro1|scaffold_394 (889963-890079) | |
| 476-597, gnl|xenTro1|scaffold_394 (889953-890038) | |
| 476-597, gnl|xenTro1|scaffold_394 (890083-889966) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ssp (0.13552) | |
| eje (0.0988338) |