Ss1.1-Liv1-LVRM1D010093.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAAGCTAGTGTACCTGGGCTGTTCGAGATGGCGGCGACTGTGCTCTGCGGTGTACTTC GTGCCTGGAGAACTGGCGTCCCGCTGGGCTGCGGGCTACGGCGGCTGAGCCAGACCCAGG GGACCCCTGAGTACCCCAGCTTCGTGGAGTCTGTGGATGAATACCATTTCGTGGAGCGCC TCTTACCCCCTGCCAGCATCCCAAAGCCCCCAAAGCACGAACATTATCCCACTCCTAGTG GCTGGCAGCCCCCCAGAGACCCTGCGCCCAGCCTGCCCTACTTCGTGCGGCGCTCGAGGA TGCACAACATCCCCGTCTACAGGGACATCACACACGGCAACCGTCAGATGACTGTGATCC GCAAGGTGGAGGGAGACATTTGGGCCCTGCAGAAGGATGTGGAAGATTTTCTGAGCCCGC TGCTGGGGAAGACACCTGTCACCCAGGTCAATGAGGTGACAGGTACCCTTCGGGTCAAGG GCTACTTTGACCAGCAGCTCAAAGCCTGGCTTCTGGAGAAGGGCTTCTGAAGCCCGGCTG AGCAGCGTGCATCACAGTGTCCCCCTCAGACTGGAGTCTTGGGGTCTCAGGAGGAGGGAG GTGACCATGGGAGCAACTGGGACAGCAGGTAGAGACCAGGGTGGAGGGCTTTCGAGTGGG ACTTGCTTGTATGAAGGAAGAAATGGGACCGTGTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAAGCTAGTGTACCTGGGCTGTTCGAGATGGCGGCGACTGTGCTCTGCGGTGTACTTC GTGCCTGGAGAACTGGCGTCCCGCTGGGCTGCGGGCTACGGCGGCTGAGCCAGACCCAGG GGACCCCTGAGTACCCCAGCTTCGTGGAGTCTGTGGATGAATACCATTTCGTGGAGCGCC TCTTACCCCCTGCCAGCATCCCAAAGCCCCCAAAGCACGAACATTATCCCACTCCTAGTG GCTGGCAGCCCCCCAGAGACCCTGCGCCCAGCCTGCCCTACTTCGTGCGGCGCTCGAGGA TGCACAACATCCCCGTCTACAGGGACATCACACACGGCAACCGTCAGATGACTGTGATCC GCAAGGTGGAGGGAGACATTTGGGCCCTGCAGAAGGATGTGGAAGATTTTCTGAGCCCGC TGCTGGGGAAGACACCTGTCACCCAGGTCAATGAGGTGACAGGTACCCTTCGGGTCAAGG GCTACTTTGACCAGCAGCTCAAAGCCTGGCTTCTGGAGAAGGGCTTCTGAAGCCCGGCTG AGCAGCGTGCATCACAGTGTCCCCCTCAGACTGGAGTCTTGGGGTCTCAGGAGGAGGGAG GTGACCATGGGAGCAACTGGGACAGCAGGTAGAGACCAGGGTGGAGGGCTTTCGAGTGGG ACTTGCTTGTATGAAGGAAGAAATGGGACCGTGTGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 383-541, + strand, RNAz p=0.997566 | |
| 383-541, - strand, RNAz p=0.997566 | |
| 383-528, + strand, RNAz p=0.958805 | |
| 383-528, - strand, RNAz p=0.958805 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 383-541, + strand, RNAz p=0.997566 | |
| 383-541, - strand, RNAz p=0.997566 | |
| 383-528, + strand, RNAz p=0.958805 | |
| 383-528, - strand, RNAz p=0.958805 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004927, + |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 107-258, gnl|bosTau2|chr29 (34247040-34247191) | |
| 107-258, gnl|canFam2|chr18 (55096285-55096134) | |
| 107-258, gnl|canFam2|chr18 (55096291-55096109) | |
| 107-258, gnl|canFam2|chr18 (55096285-55096163) | |
| 107-258, gnl|danRer3|chr10 (21876358-21876172) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4077-4222) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4071-4253) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4077-4199) | |
| 107-258, gnl|echTel1|scaffold_279974 (1234-1344) | |
| 107-258, gnl|echTel1|scaffold_279974 (1213-1343) | |
| 107-258, gnl|echTel1|scaffold_279974 (1234-1321) | |
| 107-258, gnl|hg17|chr11 (64648544-64648727) | |
| 107-258, gnl|Hg17|chr11 (64648549-64648700) | |
| 107-258, gnl|hg17|chr5 (64006516-64006636) | |
| 107-258, gnl|hg17|chr8 (16276576-16276727) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46592-46737) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46586-46768) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46592-46714) | |
| 107-258, gnl|mm7|chr19 (5951887-5951736) | |
| 107-258, gnl|mm7|chr19 (5951893-5951722) | |
| 107-258, gnl|mm7|chr19 (5951887-5951765) | |
| 107-258, gnl|Mm7|chr19 (5951886-5951735) | |
| 107-258, gnl|monDom2|scaffold_107 (3909501-3909346) | |
| 107-258, gnl|monDom2|scaffold_107 (3911171-3910997) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54658-54507) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54664-54508) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54658-54536) | |
| 107-258, gnl|panTro1|chr4 (51933604-51933484) | |
| 107-258, gnl|panTro1|chr7 (17040053-17040205) | |
| 107-258, gnl|panTro1|chr9 (65895682-65895865) | |
| 107-258, gnl|rheMac2|chr14 (9313322-9313139) | |
| 107-258, gnl|rheMac2|chr6 (62523634-62523754) | |
| 107-258, gnl|rheMac2|chr8 (16258368-16258518) | |
| 107-258, gnl|rn3|chr1 (208847704-208847553) | |
| 107-258, gnl|rn3|chr1 (208847710-208847539) | |
| 107-258, gnl|rn3|chr1 (208847704-208847582) | |
| 107-258, gnl|xenTro1|scaffold_251 (1419835-1419974) | |
| 383-689, gnl|bosTau2|chr29 (34248194-34248503) | |
| 383-689, gnl|canFam2|chr18 (55094852-55094601) | |
| 383-689, gnl|dasNov1|scaffold_34329 (4835-5075) | |
| 383-689, gnl|echTel1|scaffold_279974 (1465-1711) | |
| 383-689, gnl|Hg17|chr11 (64649773-64650083) | |
| 383-689, gnl|hg17|chr8 (16276820-16277070) | |
| 383-689, gnl|loxAfr1|scaffold_6967 (47830-48075) | |
| 383-689, gnl|mm7|chr19 (5949790-5949557) | |
| 383-689, gnl|Mm7|chr19 (5949789-5949483) | |
| 383-689, gnl|monDom2|scaffold_107 (3909221-3908908) | |
| 383-689, gnl|oryCun1|scaffold_174129 (54382-54132) | |
| 383-689, gnl|panTro1|chr7 (17040298-17040548) | |
| 383-689, gnl|rheMac2|chr8 (16258611-16258871) | |
| 383-689, gnl|rn3|chr1 (208845690-208845455) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-258, gnl|bosTau2|chr29 (34247040-34247191) | |
| 107-258, gnl|canFam2|chr18 (55096285-55096134) | |
| 107-258, gnl|canFam2|chr18 (55096291-55096109) | |
| 107-258, gnl|canFam2|chr18 (55096285-55096163) | |
| 107-258, gnl|danRer3|chr10 (21876358-21876172) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4077-4222) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4071-4253) | |
| 107-258, gnl|dasNov1|scaffold_34329 (4077-4199) | |
| 107-258, gnl|echTel1|scaffold_279974 (1234-1344) | |
| 107-258, gnl|echTel1|scaffold_279974 (1213-1343) | |
| 107-258, gnl|echTel1|scaffold_279974 (1234-1321) | |
| 107-258, gnl|hg17|chr11 (64648544-64648727) | |
| 107-258, gnl|Hg17|chr11 (64648549-64648700) | |
| 107-258, gnl|hg17|chr5 (64006516-64006636) | |
| 107-258, gnl|hg17|chr8 (16276576-16276727) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46592-46737) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46586-46768) | |
| 107-258, gnl|loxAfr1|scaffold_6967 (46592-46714) | |
| 107-258, gnl|mm7|chr19 (5951887-5951736) | |
| 107-258, gnl|mm7|chr19 (5951893-5951722) | |
| 107-258, gnl|mm7|chr19 (5951887-5951765) | |
| 107-258, gnl|Mm7|chr19 (5951886-5951735) | |
| 107-258, gnl|monDom2|scaffold_107 (3909501-3909346) | |
| 107-258, gnl|monDom2|scaffold_107 (3911171-3910997) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54658-54507) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54664-54508) | |
| 107-258, gnl|oryCun1|scaffold_174129 (54658-54536) | |
| 107-258, gnl|panTro1|chr4 (51933604-51933484) | |
| 107-258, gnl|panTro1|chr7 (17040053-17040205) | |
| 107-258, gnl|panTro1|chr9 (65895682-65895865) | |
| 107-258, gnl|rheMac2|chr14 (9313322-9313139) | |
| 107-258, gnl|rheMac2|chr6 (62523634-62523754) | |
| 107-258, gnl|rheMac2|chr8 (16258368-16258518) | |
| 107-258, gnl|rn3|chr1 (208847704-208847553) | |
| 107-258, gnl|rn3|chr1 (208847710-208847539) | |
| 107-258, gnl|rn3|chr1 (208847704-208847582) | |
| 107-258, gnl|xenTro1|scaffold_251 (1419835-1419974) | |
| 383-689, gnl|bosTau2|chr29 (34248194-34248503) | |
| 383-689, gnl|canFam2|chr18 (55094852-55094601) | |
| 383-689, gnl|dasNov1|scaffold_34329 (4835-5075) | |
| 383-689, gnl|echTel1|scaffold_279974 (1465-1711) | |
| 383-689, gnl|Hg17|chr11 (64649773-64650083) | |
| 383-689, gnl|hg17|chr8 (16276820-16277070) | |
| 383-689, gnl|loxAfr1|scaffold_6967 (47830-48075) | |
| 383-689, gnl|mm7|chr19 (5949790-5949557) | |
| 383-689, gnl|Mm7|chr19 (5949789-5949483) | |
| 383-689, gnl|monDom2|scaffold_107 (3909221-3908908) | |
| 383-689, gnl|oryCun1|scaffold_174129 (54382-54132) | |
| 383-689, gnl|panTro1|chr7 (17040298-17040548) | |
| 383-689, gnl|rheMac2|chr8 (16258611-16258871) | |
| 383-689, gnl|rn3|chr1 (208845690-208845455) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| pla (0.267344) | |
| eep (0.245128) | |
| lun (0.150489) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| eep (0.245128) | |
| lun (0.150489) | |
| eje (0.0988338) |