Non-Coding RNA Search

Ss1.1-Liv1-LVRM1D010199.5

Sequence:


               
               TAATTGTCTCTTTTTTGTGAATTTATTTGTACGCTCTTTTTTATAATGAACGTTTCAACG
TTGCTATGTATGAGGGTTCTCATAGAGCAACCGAGTAAAAATCTAAGCAAATATTTGAAC
ATTTTATCCGAACTGATTCACAATTTCACCCTGAAATAATGTGAGAACAATGGGAAACTG
TAGCTTGCTCCTTCCTACCCTCTTTGAGCATCTTTGGGATCTGGTTGCTCAAAACTCTTC
CGTGACTTCATCTTCCCCACCATTTGTGCCCATCTCAAGCCTCAGCAAGAGACCATTTGG
AACATGAAGCTTAATGACTTGACAGTGTTCTAGTGTTAAACTCTCATACCTCTGTTACAA
AATGAGAAACGCCACAGCCCGGACTGGCCTTTGCTTCCCCCTTCACCGCCCTCGCTCCTC
ACTGCCGGGAGCCCGGGGGGCAACTCCTGTGTATGTATTTCAGTGTATGACTTCAAATCA
TGCTCCAACTTGCCAGATGTAAGCTAATGTTGTTGGACACCTTAATAGAAGCAAATGTTG
TTCAATGCAGTCAATGTATATGGACTTCCATACTGGTTTTTCCAAAAACCAAAGGTAGCT
TTGAAAAACCACGTCTGGAAATGTTTGGAACGTTAAGCTGATTGACCTTTTGGGGGCTTT
GAGTAGTATATAATTGACTTCATAACTGCGTTCATTGTATCGTTAAAGTGTTTGGGAATT
TTTTGCGCTTGTTATGTGACAATAAAGTGTTTGATTTTAAAAAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTGTCTCTTTTTTGTGAATTTATTTGTACGCTCTTTTTTATAATGAACGTTTCAACG
TTGCTATGTATGAGGGTTCTCATAGAGCAACCGAGTAAAAATCTAAGCAAATATTTGAAC
ATTTTATCCGAACTGATTCACAATTTCACCCTGAAATAATGTGAGAACAATGGGAAACTG
TAGCTTGCTCCTTCCTACCCTCTTTGAGCATCTTTGGGATCTGGTTGCTCAAAACTCTTC
CGTGACTTCATCTTCCCCACCATTTGTGCCCATCTCAAGCCTCAGCAAGAGACCATTTGG
AACATGAAGCTTAATGACTTGACAGTGTTCTAGTGTTAAACTCTCATACCTCTGTTACAA
AATGAGAAACGCCACAGCCCGGACTGGCCTTTGCTTCCCCCTTCACCGCCCTCGCTCCTC
ACTGCCGGGAGCCCGGGGGGCAACTCCTGTGTATGTATTTCAGTGTATGACTTCAAATCA
TGCTCCAACTTGCCAGATGTAAGCTAATGTTGTTGGACACCTTAATAGAAGCAAATGTTG
TTCAATGCAGTCAATGTATATGGACTTCCATACTGGTTTTTCCAAAAACCAAAGGTAGCT
TTGAAAAACCACGTCTGGAAATGTTTGGAACGTTAAGCTGATTGACCTTTTGGGGGCTTT
GAGTAGTATATAATTGACTTCATAACTGCGTTCATTGTATCGTTAAAGTGTTTGGGAATT
TTTTGCGCTTGTTATGTGACAATAAAGTGTTTGATTTTAAAAAAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-661, - strand, RNAz p=0.983462

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-661, - strand, RNAz p=0.983462

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               544-702, - strand, RNAmicro p=0.993668

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               544-702, - strand, RNAmicro p=0.993668

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-763, gnl|bosTau2|chr25 (22586951-22586185)
               

               
               1-763, gnl|Hg17|chr16 (24744284-24745042)
               

               
               1-763, gnl|Mm7|chr7 (119297235-119297960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-763, gnl|bosTau2|chr25 (22586951-22586185)
               

               
               1-763, gnl|Hg17|chr16 (24744284-24745042)
               

               
               1-763, gnl|Mm7|chr7 (119297235-119297960)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cte (0.29274)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               aor (0.195274)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-763, gnl\|bosTau2\|chr25 (22586951-22586185)
	1-763, gnl\|Hg17\|chr16 (24744284-24745042)
	1-763, gnl\|Mm7\|chr7 (119297235-119297960)

	cte (0.29274)
	aor (0.195274)
	fhi (0.169578)
	mga (0.160205)
	csk (0.140746)
	cst (0.140036)
	nca (0.136874)
	lyg (0.133103)
	kid (0.129735)
	sug (0.127291)
	ecc (0.115035)